Deep-sea Sediments Research Articles

Parasedimentitalea psychrophila sp. nov., a psychrophilic bacterium isolated from deep-sea sediment.

A novel bacterium, strain QS115T, was isolated from deep-sea sediment collected from the South China Sea at a depth of 1151 m. Phylogenetic analyses based on 16S rRNA gene sequences indicated that QS115T was most closely related to Parasedimentitalea marina W43T, with similarity of 98.21 %. Strain QS115T shared 82.39 % average nucleotide identity, 26.3 % digital DNA-DNA hybridization and 85.32 % average amino acid identity with P. marina W43T. Cells of strain QS115T were Gram-stain-negative, rod-shaped and grew optimally at 10 °C, pH 7.5 and 2 % (w/v) NaCl. The principal fatty acids were summed feature 8 (C18 : 1 ω7c/ω6c), the major respiratory quinone was ubiquinone-10 and predominant polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, glycophospholipid, phosphatidylglycerol and phosphatidylcholine. Polyphasic analyses of physiological and phenotypic characteristics and genomic studies suggested that strain QS115T represents a novel species of the genus Parasedimentitalea, for which the name Parasedimentitalea psychrophila sp. nov. is proposed (type strain QS115T=MCCC 1K04395T=JCM 34219T).

A robust array geometry inversion method for a deep-towed multichannel seismic system with a complex seafloor

Deep-towed multichannel seismic exploration technology has better applicability and more development potential when utilized to invert the geoacoustic properties of deep-sea sediment. The accurate geometric inversion results of the receiving array are crucial for fine submarine sediment imaging and physical property parameter inversion based on deep-towed multichannel seismic data. Thus, this study presents an array geometry inversion method suitable for complex seafloors to address the challenge of precise source-receiver positioning. The objective function of the deep-towed seismic array geometry inversion is built using the shortest path algorithm according to the traveltimes of direct waves and seafloor reflections, and the particle swarm optimization algorithm is used to achieve high-precision inversion of the source-receiver position. The results showed that the proposed method is shown to have incomparable applicability and effectiveness in obtaining exact source-receiver positions for deep-towed multichannel seismic systems. Regardless of the complexity of the seabed morphology, seismic image processing techniques using the source-receiver position data obtained by the suggested method produce fine seismic imaging profiles that clearly and accurately reflect the structural characteristics of sediments. These findings provide insights for the accuracy and reliability of the proposed geometric shape inversion method for deep-towed seismic arrays in practical applications to meet the requirements of near-bottom acoustic detection for fine imaging of deep-sea seabed strata and precise inversion of geoacoustic parameters.

Peptides from Marine-Derived Fungi: Chemistry and Biological Activities.

Marine natural products are well-recognized as potential resources to fill the pipeline of drug leads to enter the pharmaceutical industry. In this circumstance, marine-derived fungi are one of the unique sources of bioactive secondary metabolites due to their capacity to produce diverse polyketides and peptides with unique structures and diverse biological activities. The present review covers the peptides from marine-derived fungi reported from the literature published from January 1991 to June 2023, and various scientific databases, including Elsevier, ACS publications, Taylor and Francis, Wiley Online Library, MDPI, Springer, Thieme, Bentham, ProQuest, and the Marine Pharmacology website, are used for a literature search. This review focuses on chemical characteristics, sources, and biological and pharmacological activities of 366 marine fungal peptides belonging to various classes, such as linear, cyclic, and depsipeptides. Among 30 marine-derived fungal genera, isolated from marine macro-organisms such as marine algae, sponges, coral, and mangrove plants, as well as deep sea sediments, species of Aspergillus were found to produce the highest number of peptides (174 peptides), followed by Penicillium (23 peptides), Acremonium (22 peptides), Eurotium (18 peptides), Trichoderma (18 peptides), Simplicillium (17 peptides), and Beauveria (12 peptides). The cytotoxic activity against a broad spectrum of human cancer cell lines was the predominant biological activity of the reported marine peptides (32%), whereas antibacterial, antifungal, antiviral, anti-inflammatory, and various enzyme inhibition activities ranged from 7% to 20%. In the first part of this review, the chemistry of marine peptides is discussed and followed by their biological activity.

Microplastic pollution and regulating factors in the surface sediment of the Xuande Atolls in the South China Sea

Microplastics are widely present in the marine environment, but their pollution and potential risk assessment in the seabed sediments have not been well addressed in remote sea areas. In this study, microplastics in 50 surface sediment samples from the Xuande Atolls at the Xisha of the South China Sea were studied. There were 20 samples with detectable microplastics of 5–20 items kg−1. They were all fibers in shapes and blue/transparent in colors with the dominant chemical component of polyester and the typical size of 0.02-3 mm. We found a large spatial variability of microplastic abundance in the surface sediment with generally low or undetectable levels in the lagoon deposits and the offshore deep-sea sediments but elevated abundances in the slope sediments of the Xuande Atolls. Correlation analyses suggested that microplastic variability in the Xisha sediment was less affected by local environmental parameters such as water depth, sediment particle size, organic carbon content, and sediment types. We also found that elevated microplastics in the seabed sediments on various sides of the Xuande Atolls could be related to the seasonal change in monsoon-driven currents. Finally, a low risk of microplastic pollution in the surface sediment of the Xisha is concluded based on the assessments of the polymer hazard index and the pollution load index. These findings provide not only a baseline understanding of microplastics but also their dynamics in the surface sediment of the remote Xisha area of the South China Sea.

Evaluating the contribution of hydrothermal fluids and clay minerals to the enrichment of rare earth elements and yttrium (REY) in deep-sea sediments

Deep-sea REY-rich sediments have attracted considerable attention in recent studies because of their extremely high REY resource potential. Previous studies highlighted that hydrothermal precipitates (e.g., Fe-Mn (oxyhydr)oxides) have played an important role in REY enrichment in deep-sea sediments by scavenging REY from seawater. However, the exact extent of the contribution of hydrothermal scavenging to the REY accumulation has not yet been evaluated. In addition, REY enrichment generally occurred in the pelagic clays, and whether the clays have played a role in the REY accumulation is poorly constrained. We studied bulk-sediment geochemistry and mineral fractions of sediments from two sites in the Eastern South Pacific Ocean. The results show that both cores contain REY-rich sediments layers possessing average ΣREY contents of 989 ppm and 1563 ppm, respectively. The calculated REY resource amounts in the 1 km × 1 km × optimal recovery depth (m) of the two sites are summed to 4690 t-REO. Carbonate compensation depth is one of the factors controlling the REY contents in the sediments in our study area. The shale-normalized REY patterns and calculated simulation results suggest that direct input of REY from the hydrothermal sources to the sediments was not significant. The evaluation of the contributions of REY scavenged by hydrothermal Fe-Mn (oxyhydr)oxides suggests that for the metalliferous sediments in which Fe-Mn (oxyhydr)oxides are hydrothermal-dominated, the Fe2O3 and ΣREY contents show a pronounced positive correlation for all cores, implying hydrothermal scavenging of REY significantly contributed to the accumulation of REY. However, with the continuous addition of hydrothermal Fe-Mn (oxyhydr)oxides in the pelagic clay sediments, the ΣREY contents in the REY-rich sediments firstly exhibited an increase, and then when the total Fe2O3 components achieved a certain value (∼25 wt% in this study) they started to decline. This finding suggests the appropriate input of hydrothermal Fe-Mn (oxyhydr)oxides into the sediments certainly increases the ΣREY contents through a scavenging mechanism, but that excessive addition of them would, in turn, decrease the ΣREY contents of the sediments. Additionally, the amount of clay minerals exhibited a significant positive correlation with ΣREY contents, therefore, we inferred that clay minerals probably played an important role in REY accumulation in the sediments.

Black Carbon in Deep-Sea Seamount Sediment Cores: Vertical Variation and Non-negligible Char Black Carbon.

Deep-sea sediments (>1000 m) are often considered to be the ultimate sink for black carbon (BC), and the long-term buried BC in these sediments is believed to potentially provide a negative feedback effect on climate warming. The burial flux of BC in marine sediments is predominantly estimated based on soot BC (SBC) in most studies, frequently ignoring the contribution of char BC (CBC). While this methodology may result in an underestimation of the BC burial flux, the precise extent of this underestimation is yet to be determined. This study used the benzene poly(carboxylic acid) (BPCA) method and chemothermal oxidation (CTO) method to analyze CBC and SBC in four deep-sea sediment cores from the Zhongnan seamount in the South China Sea, respectively. The CBC content increased from 0.026 ± 0.010% at the seamount upper part (1432 m) to 0.039 ± 0.012% at the seamount foot (4278 m), constituting approximately 25 to 42% of the SBC content. The content disparity between CBC and SBC diminishes as depth increases. In deep-sea sediments, biogeochemical factors influence the variation of CBC molecules with depth. In the seamount middle-upper part (1432 and 2465 m), highly condensed CBC gradually accumulated along the core downward profile. In the sediment core profile of the seamount middle-lower part (3497 m), benzenetricarboxylic acid and benzenetetracarboxylic acid content decreased while the BC condensation degree rose, i.e., less condensed CBC was preferentially consumed. Afterward, CBC molecules reached a relatively stable state at the seamount foot. This study reveals that CBC possesses the capacity for long-term carbon sequestration in deep-sea sediments, and its content is not negligible.

Characterization and Comparative Genomic Analysis of a Deep-Sea Bacillus Phage Reveal a Novel Genus.

As the most abundant biological entities, viruses are the major players in marine ecosystems. However, our knowledge on virus diversity and virus-host interactions in the deep sea remains very limited. In this study, vB_BteM-A9Y, a novel bacteriophage infecting Bacillus tequilensis, was isolated from deep-sea sediments in the South China Sea. vB_BteM-A9Y has a hexametric head and a long, complex contractile tail, which are typical features of myophages. vB_BteM-A9Y initiated host lysis at 60 min post infection with a burst size of 75 PFU/cell. The phage genome comprises 38,634 base pairs and encodes 54 predicted open reading frames (ORFs), of which 27 ORFs can be functionally annotated by homology analysis. Interestingly, abundant ORFs involved in DNA damage repair were identified in the phage genome, suggesting that vB_BteM-A9Y encodes multiple pathways for DNA damage repair, which may help to maintain the stability of the host/phage genome. A BLASTn search of the whole genome sequence of vB_BteM-A9Y against the GenBank revealed no existing homolog. Consistently, a phylogenomic tree and proteome-based phylogenetic tree analysis showed that vB_BteM-A9Y formed a unique branch. Further comparative analysis of genomic nucleotide similarity and ORF homology of vB_BteM-A9Y with its mostly related phages showed that the intergenomic similarity between vB_BteM-A9Y and these phages was 0-33.2%. Collectively, based on the comprehensive morphological, phylogenetic, and comparative genomic analysis, we propose that vB_BteM-A9Y belongs to a novel genus under Caudoviricetes. Therefore, our study will increase our knowledge on deep-sea virus diversity and virus-host interactions, as well as expanding our knowledge on phage taxonomy.

Rattail lebensspuren: Feeding impressions from deep-sea grenadiers

Lebensspuren (‘life traces’) are biologically formed physical imprints or structures left behind in sediments, the origins of which are often unknown or speculative. During a biodiversity survey on Chatham Rise (a deepsea submarine ridge off SE Aotearoa New Zealand) in winter 2013, distinctive ‘iron-shaped’ lebensspuren, often with a central ‘bitemark’ where a plug of sediment had apparently been removed, were observed during towed camera transects at depths of 450–562 m. We link these impressions in soft deep-sea sediments to the head shape of grenadiers, and infer they resulted from grenadiers foraging on benthic prey. The imprints varied in shape, depth, and clarity. Two very clearly defined impressions were matched to Coelorinchus aspercephalus and C. biclinozonalis using ventral head profiles, and the size of the fish estimated. Grenadier foraging marks were frequently seen but their occurrence and densities have not yet been mapped.

The transformation and accumulation mechanism of rare earth elements in deep-sea sediments from the Wharton Basin, Indian Ocean

Recently, rare-earth elements and yttrium (REYs, including La-Lu and Y) have been found to be remarkably enriched in Pacific and Indian Ocean deep-sea sediments, as the extreme enrichment of critical metals have received unprecedented attention. However, the origins, transformation and accumulation mechanism of REYs in deep-sea sediments remain controversial. In this study, the mineralogical and geochemical characteristics of REY-rich sediments from the Wharton Basin, Indian Ocean (core GC34) were systematically analyzed. Our results indicate that bioapatites are the most significant host phase of REYs, ambient solutions (seawater and pore water) are the main sources of REYs in deep sea sediments. Besides being the other important host phase of REYs, Fe-Mn micronodules also act as the links between sources and sinks of REYs in deep-sea sediments. Based on the variations in the characteristic profiles of ΣREY, δCe, and MREE/MREE* with depth, combined with the fractionation characteristics of LREE, MREE and HREY in bulk sediments, bioapatites, and Fe-Mn micronodules, we present a model of REYs transformation and accumulation processes in the deep-sea sediments, which mainly occurs in two intervals. The first and dominant accumulation process is in the sediment–water interface (SWI) and shallow sediments, where Fe-Mn micronodules and bioapatites adsorb and/or substitute REYs directly from ambient solutions, resulting in the initial accumulation of REYs in bioapatites and micronodules. The secondary accumulation process in the deep subsurface sediments, due to desorption and resorption processes in bioapatites and release processes in micronodules. The significant connection between P/Th and ΣREY suggests that the physical enrichment of REY-rich materials (bioapatites and micronodules) contributed to the REYs enrichment in deep-sea sediments.

Investigation on galvanic corrosion behavior of Q235 in deep-sea water/sediments of the South China Sea via manned deep diving

To investigate the corrosion behaviors of metals in deep-sea water and sediments, in 2021, we conducted a systematic set of deep-sea water and sediment corrosion tests for the first time in the South China Sea at a depth of 3404.0 m via a Chinese-manned submersible Shen Hai Yong Shi. In this study, as one of the commonest failure causes, the galvanic corrosion of Q235 mild steel in deep-sea water and sediments were comprehensively analyzed. Various techniques were employed to characterize micro-/macro-morphologies, elemental composition, crystal structure and chemical state of each specimen and its corresponding corrosion products to elaborate the corrosion reaction and mechanism. The results reveal that the galvanic corrosion rate of Q235 increases when being placed in the deep sea, when compared with that in the shallow sea. In the deep-sea water, rather than being slowed down by the low temperature and dissolved oxygen level, the galvanic corrosion reaction of Q235 is accelerated by the high hydrostatic pressure, which can change the passivation film and electrical double-layer to shift the electrode potentials and increase the potential difference of the galvanic couple. Furthermore, in deep-sea sediments, although the mass transfer is slowed down to accumulate more corrosion products, its galvanic corrosion rate is still higher than that in shallow sea. This study provides important and insights into the galvanic corrosion behaviors of Q235 in deep-sea water/sediments provide valuable guidance for material design and selection ensuring safety during service life.

Impacts of nepheloid layers and mineralogical compositions of oceanic margin sediments on REE concentrations and Nd isotopic compositions of seawater

Nepheloid layers and turbidity currents transport large quantities of detrital sediments to deep-sea basins. Locally they may control seawater – detrital particle interactions and modify dissolved REE concentrations and εNd distributions of the oceanic margin. However, to date, such processes have been poorly documented, especially in oceanic margins characterized by contrasted mineralogical compositions. Dissolved REEs and εNd from three water stations collected in the northern South China Sea (SCS) close to the Taiwanese deep-sea canyons have been analyzed, with the aim of determining the influence of nepheloid layers and mineralogical composition of lithogenic inputs on dissolved REE and εNd distributions in the ocean. Results indicate that the most radiogenic εNd value (−2.5 ± 0.2), observed at about 400 m, corresponds to the inflow of North Pacific Intermediate Water (NPIW) into the SCS. When compared with previously published Nd isotope, our current study suggests that the εNd value of NPIW which enters the SCS (from 300 to 800 m water depth) is not modified by unradiogenic sediments off the southern margin of Taiwan Island, whereas they become less radiogenic along the margin of eastern China due to Nd exchange with unradiogenic sediments (between −10.2 and −12.6) from the tropical soils of Chinese rivers basins. We have proposed that pedogenetic minerals from Chinese tropical soils modify the Nd isotopic compositions of seawater more efficiently than fresh detrital minerals resulting from very high rates of physical erosion on Taiwan Island. The MREE/MREE*, La/Sm and La/Yb ratios in nepheloid layers indicate that lateral transportation of lithogenic material within the water column can preferentially adsorb LREE compared to MREE and HREE through the scavenging process. However, this process has a negligible impact on seawater εNd of the northern SCS. At the bottom of several water stations, a negative excursion of εNd values, associated with an increase in MREE/MREE* ratios and a decrease in La/Sm ratios, suggests a remineralization flux resulting from the dissolution of Mn oxides during early diagenesis of deep-sea sediments.

Geochemical Characteristics of the Volcanic Rocks Associated with Boron-Rich Deposits from the Xiongba Basin, Qinghai–Tibet Plateau

The Qinghai–Tibet Plateau (QTP) hosts significant lacustrine sedimentary boron-rich deposits, with the Xiongba Basin being a prominent region housing two large sedimentary boron-rich deposits. These deposits are closely associated with extensive Neogene volcanic rocks. This study investigates the origin and boron sources of Miocene volcanic rocks in the Xiangqu River area, located within the Xiongba Basin. The volcanic rocks in the basin comprise ultrapotassic andesites, ultrapotassic trachyte, potassic trachyte, and potassic trachyandeiste. The trace element content and the active/inert elements ratios of the studied volcanic rocks have indicated that they were generated in a subduction environment and were influenced by enrichment fluids derived from deep-sea sediments or altered oceanic crust during their formation. Accordingly, the studied volcanic rocks exhibit significant boron enrichment. The eruption of magma and subsequent hydrothermal activity released boron, which became the primary source for the lacustrine sedimentary boron-rich deposits within the basin. The arc-like trace element features (e.g., Nb-Ta depletion relative to La and K) and high B concentrations in these rocks were inherited from the mantle source, which had been enriched by melt/fluid of the subducted sediments. A two-stage evolutionary model is proposed to explain the enrichment of B in subduction environments, as well as the subsequent melting of the B-enriched source during a post-collisional setting. These findings highlight the potential for boron and lithium mineralization in similar volcanic rock-bearing regions across the QTP. Future exploration efforts in such areas could provide valuable insights into the formation processes of lacustrine sedimentary boron-rich deposits and contribute to the understanding of boron and lithium resource potential.

Sediment accumulation rates and carbonate fluxes of deep-sea sediments in the southern Gulf of Mexico

Here we present the mass and carbonate annual fluxes, collected by two sediment traps at 1000 m depth, located on the western and southern deep-water region of the Gulf of Mexico (GM), and compare them with the total mass and carbonate accumulation rates (CAR) from 46 sediment cores retrieved from continental slopes and the abyssal plain of the southern Gulf of Mexico (sGM). CaCO3 fluxes in the sediment traps located close to 1000 m water depth, range between 15.1 and 22.4 g m−2 yr−1, these values fall on the high-end range of the mean fluxes reported for the global ocean (9–22 g m−2 yr−1). The carbonate fluxes from the water column are remarkably close to the CAR in the lower slope and abyssal sediments of the southern GM, implying that dissolution processes of biogenic carbonate in the sediments below 1000 m are negligible in the sGM. The spatial patterns of CARs in the sediments are mainly linked with surface productivity of calcareous organisms and export to depth over the continental slope and abyssal plain regions, with mean values of 15.7 ± 5.7 g m−2 yr−1 (0.15 ± 0.06 mol m−2 yr−1). However, there are some large areas over the abyssal plain to the north of the Campeche escarpment showing enhanced CAR values most likely as a result from two processes, lateral input from the Yucatan carbonate shelf region and massive collapse events originating at the Campeche escarpment and deposited to the north of the Yucatan Platform. These processes can account for an additional increase in carbonate mass accumulation by approximately 8 g m−2 yr−1 in this area, showing a decreasing gradient towards the N of the escarpment. Lateral transport by turbidity currents of carbonate platform sediments along submarine canyons and probably episodic gravity flows further aid to explain the localized higher carbonate mass accumulation (> 20 g m−2 yr−1) observed at the foot of the continental slopes to the west and south of the southern GM. We estimate total carbonate accumulation estimates for the entire Gulf of Mexico, from the upper slope to the abyssal plain (1000–3750 m), considering the northern deep-water region reported by Giering et al., 2018, of 0.09 to 0.12 Tmol/yr accounts for 0.8 to 1.8% of all carbonate sedimentation in the ocean below 1000 m. Taking into considerations its small areal extent of <0.3% of the global ocean the GM carbonate accumulation accounts for a factor of 3 to 6 its areal importance, implying that changes in the production and export of carbonate in the GM due to surface ocean warming and acidification processes in this inland sea will have a sensible effect in the global carbon cycle.

Induction and Characterisation of Lignocellulolytic Activities from Novel Deep-Sea Fungal Secretomes

Fungi are increasingly recognised as being able to inhabit extreme environments. The deep sea is considered an extreme environment because of its low temperatures, high hydrostatic and lithostatic pressures, 3.5% salinity, and low oxygen, nutrient and light availability. Fungi inhabiting the deep sea may have evolved to produce proteins that allow them to survive these conditions. Investigation and characterisation of fungal lignocellulolytic enzymes from extreme environments like the deep sea is needed, as they may have unusual adaptations that would be useful in industry. This work, therefore, aimed to profile in detail the lignocellulolytic capabilities of fungi isolated from deep-sea sediments in the Atlantic Ocean, and a comparative lignocellulolytic terrestrial isolate. The isolates were strains of Emericellopsis maritima, Penicillium chrysogenum, P. antarcticum and Talaromyces stollii. Lignocellulolytic enzyme induction was achieved using liquid-state fermentation (LSF) with wheat bran as the main carbon source, while enzyme characteristics were evaluated using biochemical assays and gel-based proteomics. This study revealed that the isolates were halotolerant, produced xylanase over wide pH and temperature ranges, and produced a variety of glycoside hydrolase and feruloyl esterase activities. The T. stollii secretome demonstrated remarkable levels of exo-glycoside hydrolase activity, with xylanase activity optimum between pH 1.5–6.0 and temperatures between 1–60 °C, making this isolate an ideal candidate for biotechnological applications. This study is the first to quantitatively characterise xylanase activities and exo-glycoside hydrolase activities secreted by E. maritima, P. antarcticum and a marine T. stollii strain. This study is also the first to quantitatively characterise xylanase activities by a marine strain of P. chrysogenum during LSF.

Phillipsite in pelagic REY-rich sediments and ferromanganese nodules from the Western Pacific: Geochemical characteristics and implications for REY enrichments

Recent studies have shown that the rare earth elements and yttrium (REY)-rich deep-sea sediments often contain abundant phillipsite, which is considered as an indicator mineral for REY-rich sediments. However, the phillipsite contains very low REY content, and the coexistence of abundant phillipsite and REY enrichment is generally explained by the low sedimentation rate in deep sea environment. Whether the phillipsite has the capacity to enrich REY and why it is REY-poor is still unclear. Phillipsite is also present in ferromanganese nodules in the surface of the deep-sea sediments, yet whether there is any compositional/genetic difference between the sediment-hosted and nodule-hosted phillipsite is unclear. Here, we study the phillipsite in pelagic REY-rich sediments and ferromanganese nodules from the Western Pacific Marcus‐Wake seamount chain. Mineralogical, morphologic, and geochemical analyses of the sediment-/nodule-hosted phillipsite were carried out. Our results show that the XRD patterns and Si/Al ratios of the sediment-/nodule-hosted phillipsite are the same, and they are both K-phillipsite. However, the consistent Fe/Ti, Zr/Hf and Nb/Ta ratios as well as similar Zr/Nb and Zr/Ta ratios of sediment-hosted phillipsite indicate that the sediment-hosted phillipsite has a homogeneous parent rock and has undergone the same degree of low-temperature alteration. In contrast, the nodule-hosted phillipsite may have inhomogeneous parent rock and have undergone different degree alteration because of the varying Fe/Ti, Zr/Hf and Nb/Ta ratios, as well as the wide range of Zr/Nb and Zr/Ta ratios in the nodule-hosted phillipsite. Both sediment-/nodule-hosted phillipsite have similar REY patterns to those of the pore water and have low total REY contents, indicating that they do obtain REYs from the pore water. In deep-sea REY-rich sediments, the phillipsite does not enrich REY, although the REY can enter the phillipsite lattice. This may be caused by the low cation exchange selectivity for REYs in phillipsite, which can be attributed to high hydration energy. Our study indicates that phillipsite does not participate in REY-enrichment. The implication of phillipsite for REY enrichment may be attributed to the consistency of the environmental conditions between the phillipsite formation and REY enrichment.

Use of rapid solidification in processing of aluminum alloys with reduced deep-sea nodules

Ferromanganese nodules represent an industrially untapped source of valuable metals (Mn, Cu, Ni, Ti, Co) but are still just the object of scientific research. In comparison with already utilized rocks, deep-sea deposits are too hard to reach for their full-scale mining to be profitable. Despite of this, current marine engineering allows us to conduct complete exploration and obtain mineral samples. We can already now develop low-cost methods for subsequent processing in anticipation of improved and safer future mining technology. But in what form would be the final product the most applicable? In our study, we reduced the pyro metallurgical pretreatment of raw nodules to two simple steps: roasting and aluminothermic reduction. Then we added a product, manganese-based alloy, to pure aluminum as a new alloying additive. As a reference for experimental alloys, commercial cast AlMn10 master alloy was chosen. The tested samples were prepared using two advanced operations of powder metallurgy: melt-spinning and spark plasma sintering (SPS). Microstructure was described in detail, tribological and selected mechanical properties were measured, and a comparative analysis was conducted. New additive gradually improved properties of alloys to a level close to 3xxx industrial alloys with its increasing percentage in pure aluminum. Measured values did not surpass the referent AlMn10, but there was not recorded any adverse impact associated with the origin of alloying mixture.

Characterization of a novel monooxygenase originating from a deep-sea sediment metagenomic library.

Oxygenases are important biocatalysts to produce many industrially important biomolecules. Here, a novel oxygenase, named MoxA, was identified through screening of a deep-sea sediment metagenomic library. Sequence analysis showed MoxA contains 424 amino acid residues with a predicated molecular mass of 46.9kDa. Multiple sequence alignment and phylogenetic analysis indicated the sequence might be a new member of monooxygenase subfamily. A recombinant MoxA was obtained through the functional expression of moxA gene in Escherichia coli. Characterization of the purified MoxA indicated that it is an alkaline oxygenase showing maximal activity at pH 8.0. The optimal temperature of MoxA was 37 ℃, and it retained more than 70% of its initial activity after 1h at 20-50 ℃ exhibiting good thermostability. Furthermore, effect of metal ions and organic solvents on enzymatic activity was investigated, and the results showed that the activity of MoxA was enhanced by Cu2+, Zn2+, Co2+ and Mg2+ at 1mM, and by Co2+, Ca2+ and Mg2+ at 5mM. Moreover, the recombinant strain harboring MoxA was used as a whole-cell biocatalyst for the efficient biosynthesis of indigo showing promising conversion efficiency. The biochemical properties of MoxA indicated that it would provide great contribution for the indigo bioproduction. KEY POINTS: • A novel monooxygenase from a metagenomic library was characterized. • The activity of MoxA was enhanced by metal ions at 1mM and 5mM. • MoxA has an optimal temperature of 37 ℃ and exhibited high conversion capacity.

Degradation mechanism of saliferous compounding heavy metals-organic wastewater by manganese and iron cycling in the microbial fuel cell

With the rapid development of industry and agriculture, the heavy metal ions and organic matter pollution coexistence systems become increasingly common, aggravating environmental damage and endangering water safety. Therefore, an urgent need to find a general method to achieve the typical removal of two pollutants or promote the removal of one to improve another degradation, solving the related pollution problems. Meanwhile, the related research microorganism’s salt and heavy metal tolerance is lower, limiting the related research. Therefore, the study makes the deep-sea sediment as the strain source, obtaining the low-valence manganese-oxidizing functional bacteria (OMF) with salt-tolerant and heavy metal-tolerant characteristics, constructing the closed-circuit microbial fuel cell (MFC), carried out the degradation mechanism of saliferous compounding heavy metals-organic wastewater by manganese and iron cycling processes. The results showed that under the salt content conditions of 3%, pH = 6, external resistance of 510 Ω, Mn2+ concentration of 11 g/L, Mn2+:Fe2+ = 1:0.3 and OMF (Rhodococcus erythropolis: Microbacterium kitamiense: Dietzia = 1:2:1) inoculation amount of 20%. The maximum removal rates of organic pollutants (400 mg/L), Cu2+ (250 mg/L), Co2+ (150 mg/L) and Ni2+ (200 mg/L) were 94.72%, 91.23%, 99.89% and 99.97%, respectively. Realizing the heavy metal ions and organic matter pollution coexisting systems purification. The manganese-iron cycle mediated by oxidized low-valent manganese functional bacteria has a dual effect on the pollutant’s degradation process through MFC. Firstly, the synergistic redox cycle transformation of iron and manganese promoted the production of OH and accelerated the degradation of organic matter. Secondly, the ferromanganese oxidation products and bio-nanowires enhance material oxidation and electron transfer, improving the organic pollution oxidation and heavy metal ions fixation efficiency. This study provides a new idea for the heavy metal ions and organic matter pollution coexisting systems remediation and MFC degradation efficiency optimization.

Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species

Deep sea cold seep sediments have been discovered to harbor novel, abundant, and diverse bacterial and archaeal viruses. However, little is known about viral genetic features and evolutionary patterns in these environments. Here, we examined the evolutionary ecology of viruses across active and extinct seep stages in the area of Haima cold seeps in the South China Sea. A total of 338 viral operational taxonomic units are identified and linked to 36 bacterial and archaeal phyla. The dynamics of host-virus interactions are informed by diverse antiviral defense systems across 43 families found in 487 microbial genomes. Cold seep viruses are predicted to harbor diverse adaptive strategies to persist in this environment, including counter-defense systems, auxiliary metabolic genes, reverse transcriptases, and alternative genetic code assignments. Extremely low nucleotide diversity is observed in cold seep viral populations, being influenced by factors including microbial host, sediment depth, and cold seep stage. Most cold seep viral genes are under strong purifying selection with trajectories that differ depending on whether cold seeps are active or extinct. This work sheds light on the understanding of environmental adaptation mechanisms and evolutionary patterns of viruses in the sub-seafloor biosphere.

The Subsea Micro-Drilling Vehicle’s Dynamic Analysis during Landing

Whether the subsea micro-drilling vehicle (SMDV) can perform its subsequent operations safely depends on the quality of the landing procedure. RecurDyn creates the SMDV dynamic model for this study. A model of the interaction between the SMDV and deep-sea sediment is built, and a simulation of the SMDV falling on the sea’s sediment substrate is developed. The water resistance is applied to the model by equivalent height replacement, and the in-situ soil data is measured with a triaxial undrained unconsolidated (UU) compression test and a load-sinkage experiment. When the landing surface is a flat sediment substrate, the release height is 5 m, the sinkage amount is 347 mm, and the center of mass’s impact acceleration is less than seven gravitational accelerations. Three states can occur when the vehicle lands on a sloped surface: stability, slip, and overturning. The risk of slipping and overturning is the least when the vehicle is landing on the ground in the forward direction, and the risk is equal when it lands on the ground in the backward and sideways directions. The ultimate overturning angle drops, and the final slip angle remains relatively constant as the vehicle’s release height increases. Our findings offer a theoretical foundation for the SMDV’s safe landing and the scientific formulation of rational release intervals.