Deep-sea Hydrothermal Vent Fields Research Articles

Putative novel hydrogen- and iron-oxidizing sheath-producing Zetaproteobacteria thrive at the Fåvne deep-sea hydrothermal vent field.

Knowledge on microbial iron oxidation is important for understanding the cycling of iron, carbon, nitrogen, nutrients, and metals. The current study yields important insights into the niche sharing, diversification, and Fe(III) oxyhydroxide morphology of Ghiorsea, an iron- and hydrogen-oxidizing Zetaproteobacteria representative belonging to Zetaproteobacteria operational taxonomic unit 9. The study proposes that Ghiorsea exhibits a more extensive morphology of Fe(III) oxyhydroxide than previously observed. Overall, the results increase our knowledge on potential drivers of Zetaproteobacteria diversity in iron microbial mats and can eventually be used to develop strategies for the cultivation of sheath-forming Zetaproteobacteria.

Tepidibacter hydrothermalis sp. nov., a novel anaerobic bacterium isolated from a deep-sea hydrothermal vent.

A novel anaerobic heterotrophic bacterium, designated strain SWIR-1T, was isolated from a deep-sea hydrothermal vent field sample collected from the Southwest Indian Ridge at a depth of 2700 m. Phylogenetic analysis indicated that strain SWIR-1T belongs to the genus Tepidibacter, and the most closely related species are Tepidibacter mesophilus B1T (99.1 % 16S rRNA gene sequence similarity), Tepidibacter formicigenes DV1184T (94.6 %) and Tepidibacter thalassicus SC562T (93.9 %). Strain SWIR-1T shares 77.3-87.2 % average nucleotide identity and 21.5-35.7 % digital DNA-DNA hybridization values with the three type strains of Tepidibacter species. Cells of strain SWIR-1T were Gram-stain-positive, motile, short straight rods. Endospores were observed in stationary-phase cells when grown on Thermococcales rich medium. Strain SWIR-1T grew at 15-45 °C (optimum, 30°C), at pH 5.5-8.0 (optimum, pH 7.0) and with 1.0-6.0 % (w/v) NaCl (optimum, 2.0 %). Substrates utilized by strain SWIR-1T included complex proteinaceous, chitin, starch, lactose, maltose, fructose, galactose, glucose, rhamnose, arabinose, ribose, alanine, glycine and glycerol. The major fermentation products from glucose were acetate, lactate, H2 and CO2. Elemental sulphur, sulphate, thiosulphate, sulphite, fumarate, nitrate, nitrite and FeCl3 are not used as terminal electron acceptors. The main cellular fatty acids consisted of iso-C15 : 0 (28.4 %), C15 : 1 iso F (15.4 %) and C16 : 0 (9.8 %). The major polar lipids were phospholipids and glycolipids. No respiratory quinones were detected. Genomic comparison revealed a distinctive blended gene cluster comprising hyb-tat-hyp genes, which play a crucial role in the synthesis, maturation, activation and export of NiFe-hydrogenase. Based on the phylogenetic analysis, genomic, physiologic and chemotaxonomic characteristics, strain SWIR-1T is considered to represent a novel species within the genus Tepidibacter, for which the name Tepidibacter hydrothermalis sp. nov. is proposed. The type strain is strain SWIR-1T (=DSM 113848T=MCCC 1K07078T).

Genome analysis of Tepidibacter sp. SWIR-1, an anaerobic endospore-forming bacterium isolated from a deep-sea hydrothermal vent.

Tepidibacter sp. SWIR-1, a putative new species isolated from deep-sea hydrothermal vent field on the Southwest Indian Ridge (SWIR), is an anaerobic, mesophilic and endospore-forming bacterium belonging to the family Peptostreptococcaceae. In this study, we present the complete genome sequence of strain SWIR-1, consists of a single circular chromosome comprising 4,122,966 nucleotides with 29.25% G+C content and a circular plasmid comprising 38,843 nucleotides with 29.46% G+C content. In total, 3861 protein coding genes, 104 tRNA genes and 46 rRNA genes were obtained. SWIR-1 genome contains numerous genes related to sporulation and germination. Compared with the other three Tepidibacter species, SWIR-1 contained more spore germination receptor proteins. In addition, SWIR-1 contained more genes involved in chemotaxis and two-component systems than other Tepidibacter species. These results indicated that SWIR-1 has developed versatile adaptability to the Southwest Indian Ridge hydrothermal vent environment. The genome of strain SWIR-1 will be helpful for further understanding adaptive strategies used by bacteria dwelling in the deep-sea hydrothermal vent environments of different oceans.

Active hydrothermal vent ecosystems in the Indian Ocean are in need of protection

Deep-sea hydrothermal vent fields are among the most pristine and remarkable ecosystems on Earth. They are fueled by microbial chemosynthesis, harbor unique life and can be sources of precipitated mineral deposits. As the global demand for mineral resources rises, vent fields have been investigated for polymetallic sulfides (PMS) and biological resources. The International Seabed Authority (ISA) has issued 7 contracts for PMS exploration, including 4 licenses for vent fields in the Indian Ocean. Here, we provide a summary of the available ecological knowledge of Indian vent communities and we assess their vulnerability, sensitivity, ecological and biological significance. We combine and apply scientific criteria for Vulnerable Marine Ecosystems (VMEs) by FAO, Particular Sensitive Sea Areas (PSSAs) by IMO, and Ecologically or Biologically Significant Areas (EBSAs) by CBD. Our scientific assessment shows that all active vent fields in the Indian Ocean appear to meet all scientific criteria for protection, and both the high degree of uniqueness and fragility of these ecosystems stand out.

Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits

BackgroundWhen deep-sea hydrothermal fluids mix with cold oxygenated fluids, minerals precipitate out of solution and form hydrothermal deposits. These actively venting deep-sea hydrothermal deposits support a rich diversity of thermophilic microorganisms which are involved in a range of carbon, sulfur, nitrogen, and hydrogen metabolisms. Global patterns of thermophilic microbial diversity in deep-sea hydrothermal ecosystems have illustrated the strong connectivity between geological processes and microbial colonization, but little is known about the genomic diversity and physiological potential of these novel taxa. Here we explore this genomic diversity in 42 metagenomes from four deep-sea hydrothermal vent fields and a deep-sea volcano collected from 2004 to 2018 and document their potential implications in biogeochemical cycles.ResultsOur dataset represents 3635 metagenome-assembled genomes encompassing 511 novel and recently identified genera from deep-sea hydrothermal settings. Some of the novel bacterial (107) and archaeal genera (30) that were recently reported from the deep-sea Brothers volcano were also detected at the deep-sea hydrothermal vent fields, while 99 bacterial and 54 archaeal genera were endemic to the deep-sea Brothers volcano deposits. We report some of the first examples of medium- (≥ 50% complete, ≤ 10% contaminated) to high-quality (> 90% complete, < 5% contaminated) MAGs from phyla and families never previously identified, or poorly sampled, from deep-sea hydrothermal environments. We greatly expand the novel diversity of Thermoproteia, Patescibacteria (Candidate Phyla Radiation, CPR), and Chloroflexota found at deep-sea hydrothermal vents and identify a small sampling of two potentially novel phyla, designated JALSQH01 and JALWCF01. Metabolic pathway analysis of metagenomes provides insights into the prevalent carbon, nitrogen, sulfur, and hydrogen metabolic processes across all sites and illustrates sulfur and nitrogen metabolic “handoffs” in community interactions. We confirm that Campylobacteria and Gammaproteobacteria occupy similar ecological guilds but their prevalence in a particular site is driven by shifts in the geochemical environment.ConclusionOur study of globally distributed hydrothermal vent deposits provides a significant expansion of microbial genomic diversity associated with hydrothermal vent deposits and highlights the metabolic adaptation of taxonomic guilds. Collectively, our results illustrate the importance of comparative biodiversity studies in establishing patterns of shared phylogenetic diversity and physiological ecology, while providing many targets for enrichment and cultivation of novel and endemic taxa.6aUVBDbDZ6m8Eohc79dCDgVideo

Application of scientific criteria for identifying hydrothermal ecosystems in need of protection

Deep-sea hydrothermal vent fields are globally rare (abundant in numbers, but extremely small in area) and are rich in extraordinary life based on chemosynthesis rather than photosynthesis. Vent fields are also sources of polymetallic sulfides rich in copper and other metals. Mineral resources of the international seabed beyond national jurisdictions (referred to as the “Area”) are administered by the International Seabed Authority (ISA), which has the mandate to organize and control mineral resource-related activities and to ensure effective protection of the marine environment from harmful effects which may arise from such activities. To date, the ISA has approved 3 contracts for mineral exploration on the northern Mid-Atlantic Ridge (nMAR) and is developing a Regional Environmental Management Plan (REMPs) for polymetallic sulfide resources in the Area of northern MAR, including the application of area-based management tools to address the potential impacts of mining activities. Several intergovernmental organizations have developed suites of criteria to identify vulnerable, sensitive, and ecologically or biologically significant ecosystems in need of protection. In this case study, we combine criteria developed by FAO for VMEs (Vulnerable Marine Ecosystems), by CBD for EBSAs (Ecologically or Biologically Significant Areas), and by IMO for PSSAs (Particularly Sensitive Sea Areas) to assess whether the 11 confirmed vent fields on the nMAR may meet these criteria. Our assessment indicates that all vent fields meet multiple criteria for vulnerability, sensitivity, and ecological or biological significance, and 10 of 11 vent fields meet all criteria for ecosystems in need of protection.

Distribution and Genetic Divergence of Deep-Sea Hydrothermal Vent Copepods (Dirivultidae: Siphonostomatoida: Copepoda) in the Northwestern Pacific.

Copepods in the family Dirivultidae are one of the most successful meiofauna in deep-sea hydrothermal vent fields and are abundant near venting fluid. Although vents are spatially limited ocean habitats, they are distributed widely in the Atlantic, Pacific, and Indian Oceans. However, knowledge of dirivultid biogeography and phylogeography remains limited, especially in the northwestern Pacific. Here, we obtained partial mitochondrial COI gene sequences of three dirivultids from the northwestern Pacific-Stygiopontius senokuchiae and an unidentified Chasmatopontius species from vent fields in the Izu-Bonin Arc and Stygiopontius senckenbergi associated with the squat lobster Shinkaia crosnieri in the Okinawa Trough-and analyzed them in comparison with existing data. The among-species sequence diversity exceeded 80 out of 560 bp (14% or 0.166 in Kimura 2-parameter distance), whereas the within-species diversity was less than 10 bp (2% or 0.018 in Kimura 2-parameter distance), with no genetic saturation. Each species formed a monophyletic clade and the genetic region targeted is deemed reliable for identifying species and populations for these copepods. Among the three genera targeted, only Chasmatopontius formed a monophyletic cluster, while Aphotopontius and Stygiopontius did not. Species delimitation analyses suggested the existence of cryptic species in Chasmatopontius. Subdivision among local populations was observed in Aphotopontius, but not in Stygiopontius in the same distribution, implying potential differences in dispersal ability among different genera of dirivultids. Further sampling is required, to fill the spatial gaps to elucidate the biogeography and evolution of dirivultids in the global deep ocean.

On the systematics and ecology of two new species ofProvanna(Gastropoda: Provannidae) from deep-sea hydrothermal vents in the Caribbean Sea and Southern Ocean

ABSTRACTThe recent discovery and exploration of deep-sea hydrothermal vent fields in the Mid-Cayman Spreading Centre, Caribbean Sea (Beebe Vent Field, 4956–4972 m depth) and the East Scotia Ridge, Southern Ocean (E2 and E9 vent fields, 2394–2641 m depth) have yielded extensive collections of two new provannid species, Provanna beebei n. sp. and P. cooki n. sp. Morphological and molecular taxonomy (530 bp of the mitochondrial cytochrome c oxidase subunit I gene) confirm P. beebei n. sp. and P. cooki n. sp. as distinct species; these species are formally described, and details are provided of their distribution, habitat and species associations. Bayesian and maximum likelihood analyses support the placement of P. beebei n. sp. and P. cooki n. sp within the genus Provanna and show that these two new deep-sea species form a well-supported clade with the abyssal West Pacific P. cingulata. Provanna beebei n. sp. and P. cooki n. sp. represent the first records of Provanna from hydrothermal vents in the Caribbean Sea and Southern Ocean, respectively, and extend the known geographic range of the genus. For the first time, intraspecific phenotypic variation in size and sculpture has been reported for Provanna. At the East Scotia Ridge, shell-size frequency distributions and median shell size of P. cooki n. sp. varied significantly between the E2 and E9 vent fields, as well as between diffuse flow and high-temperature venting habitats within each field. The variation in shell sculpture in relation to habitat was also observed in P. cooki n. sp.

Description of Barathricolathermophilus, a new species from a deep-sea hydrothermal vent field in the Indian Ocean with redescription of the Barathricola type species (Crustacea, Copepoda, Cyclopoida).

Re-study of the type species of the genus Barathricola Humes, 1999 (Copepoda, Cyclopoida, Schminkepinellidae) described from the Pacific Ocean (Juan de Fuca Ridge), and study of the species Barathricolathermophilussp. nov. from a deep-sea hydrothermal vent field on the Central Ridge in the Indian Ocean revealed a derived feature and widespread geographic distribution of this deep-sea genus of cyclopoids. The derived feature of Barathricola is the sexually dimorphic third endopodal segment of leg 3 possessing a small outer terminal spine together with spine-like outgrowths on this segment. The new species differs from Barathricolarimensis Humes, 1999 in not expressing sexual dimorphism in leg 5, having three spines and one seta on its exopod in both sexes (B.rimensis has three spines and one seta on the female exopod but three spines and two setae on the male exopod) and in having broader caudal rami which are 8.9 times longer than wide in the female (this ratio for B.rimensis is 11). An amended diagnosis of the genus Barathricola, a key and a table of morphological differences for all species of Schminkepinellidae are given.

Faunal composition of deep-sea hydrothermal vent fields on the Izu–Bonin–Mariana Arc, northwestern Pacific

Hydrothermal vent fields in the deep-sea are highly productive and host highly specific animals adapted to chemosynthesis-based ecosystems. Knowledge on the distribution range of dominant fauna in these ecosystems help elucidate their biogeography, as well as contribute key baseline data for managing conservation strategies. Here, we report faunal compositions for two hydrothermal vent fields, Myojin-sho Caldera and the Bayonnaise Knoll, on the Izu–Bonin–Mariana (IBM) Arc, a submarine volcanic arc system in the western Pacific, and examined biogeographical subdivisions within. Similarity indices and subsequent analyses based on species presence/absence data revealed three groups, namely those in the Izu area, shallower vents in the Bonin–Mariana area, and deeper vents in the Bonin–Mariana area. This pattern of subdivision indicates that water depth and tectonic discontinuity, in this case the Sofugan Tectonic Line, contribute to the distribution ranges of vent specific animals on the IBM Arc, but the conjunction of Mariana and West Mariana ridges have little contribution. This is the first data for faunal subdivision of vents on the 9000 km-long submarine volcanic chain of the western Pacific extending further south of the IBM Arc, and further analyses on faunal distribution of other vents in this area and larval ecology of vent animals are required to understand subdivisions across the entire chain.

Marinitoga lauensis sp. nov., a novel deep-sea hydrothermal vent thermophilic anaerobic heterotroph with a prophage

A novel moderately thermophilic, heterotrophic anaerobe, designated strain LG1T, was isolated from the Mariner deep-sea hydrothermal vent field along the Eastern Lau Spreading Center and Valu Fa Ridge. Cells of strain LG1T were motile rods, occurring singly or in pairs, 0.6μm in width and 1.2μm in length. The strain LG1T grew between 40 and 70°C (optimum 50–55°C), at a pH between 5 and 8 (optimum pH 6.5) and with 7.5–50gL−1 NaCl (optimum 30gL−1). Sulfur, cystine and thiosulfate were reduced to sulfide, and cell yield was improved in the presence of cystine. Strain LG1T was an organotroph able to use a variety of organic compounds. Phylogenetic analysis based on 16S rRNA gene sequence comparisons indicated that strain LG1T was affiliated to the genus Marinitoga within the order Petrotogales. It shared 95.34–96.31% 16S rRNA gene sequence similarity with strains of other Marinitoga species, and is most closely related to Marinitoga okinawensis. Genome analysis revealed the presence of a prophage sharing high sequence homology with the viruses MPV1, MCV1 and MCV2 hosted by Marinitoga strains. Based on the data from the phylogenetic analyses and the physiological properties of the novel isolate, we propose that strain LG1T is a representative of a novel species, for which the name Marinitoga lauensis sp. nov. is proposed; the type strain is LG1T (=DSM 106824=JCM 32613).

Colonization of synthetic sponges at the deep-sea Lucky Strike hydrothermal vent field (Mid-Atlantic Ridge): a first insight

The main objective of the present study was to investigate invertebrate colonization processes at deep-sea hydrothermal vents in response to environmental factors and to the presence of complex artificial substrata (i.e., synthetic sponges). We set out a pilot experiment at 1700 m depth on the Lucky Strike vent field (Eiffel Tower, Mid-Atlantic Ridge). Synthetic sponges were deployed in 2011 at five sites along a gradient of hydrothermal activity and were recovered in 2013, and the composition of macro- and meiofauna was assessed on four of them. The influence of temperature and fluid inputs on colonizer faunal abundance and diversity was analyzed. Faunal abundance and diversity decreased with increasing distance from vent emission. The colonizers were represented by a subset of species characterizing the natural populations at the Eiffel Tower edifice. Some taxa (e.g., pycnogonids, ophiuroids, cnidarians, foraminiferans) represented new records not yet found on deployed substrata on the Eiffel Tower. Synthetic sponges harbored a high percentage (from 17.5% to 55%) of juveniles and larval stages of polychaetes, molluscs, and copepods. A mature nematode community (mainly Cephalochaetosoma and Halomonhystera) in a reproductive stage was found. Variability in faunal composition was significantly correlated with distance from fluid emission. We hypothesize that the complex structure of inorganic sponge substrata may have favored settlement of juveniles and larvae. Sponge substrata may, therefore, help sample a wider range of organisms than other substrata, and, thereby, provide a more complete picture of vent biodiversity. The results provided in this study might improve our understanding of mechanisms that govern faunal colonization processes at vents.

Unraveling RubisCO Form I and Form II Regulation in an Uncultured Organism from a Deep-Sea Hydrothermal Vent via Metagenomic and Mutagenesis Studies.

Ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) catalyzes the first major step of carbon fixation in the Calvin-Benson-Bassham (CBB) cycle. This autotrophic CO2 fixation cycle accounts for almost all the assimilated carbon on Earth. Due to the primary role that RubisCO plays in autotrophic carbon fixation, it is important to understand how its gene expression is regulated and the enzyme is activated. Since the majority of all microorganisms are currently not culturable, we used a metagenomic approach to identify genes and enzymes associated with RubisCO expression. The investigated metagenomic DNA fragment originates from the deep-sea hydrothermal vent field Nibelungen at 8°18′ S along the Mid-Atlantic Ridge. It is 13,046 bp and resembles genes from Thiomicrospira crunogena. The fragment encodes nine open reading frames (ORFs) which include two types of RubisCO, form I (CbbL/S) and form II (CbbM), two LysR transcriptional regulators (LysR1 and LysR2), two von Willebrand factor type A (CbbO-m and CbbO-1), and two AAA+ ATPases (CbbQ-m and CbbQ-1), expected to function as RubisCO activating enzymes. In silico analyses uncovered several putative LysR binding sites and promoter structures. Functions of some of these DNA motifs were experimentally confirmed. For example, according to mobility shift assays LysR1’s binding ability to the intergenic region of lysR1 and cbbL appears to be intensified when CbbL or LysR2 are present. Binding of LysR2 upstream of cbbM appears to be intensified if CbbM is present. Our study suggests that CbbQ-m and CbbO-m activate CbbL and that LysR1 and LysR2 proteins promote CbbQ-m/CbbO-m expression. CbbO-1 seems to activate CbbM and CbbM itself appears to contribute to intensifying LysR’s binding ability and thus its own transcriptional regulation. CbbM furthermore appears to impair cbbL expression. A model summarizes the findings and predicts putative interactions of the different proteins influencing RubisCO gene regulation and expression.

Sediment Microbial Diversity of Three Deep-Sea Hydrothermal Vents Southwest of the Azores.

Menez Gwen, Lucky Strike and Rainbow are the three most visited and well-known deep-sea hydrothermal vent fields in the Azores region, located in the Mid-Atlantic Ridge. Their distinct geological and ecological features allow them to support a diversity of vent communities, which are largely dependent on Bacteria and Archaea capable of anaerobic or microaerophilic metabolism. These communities play important ecological roles through chemoautotrophy, feeding and in establishing symbiotic associations. However, the occurrence and distribution of these microbes remain poorly understood, especially in deep-sea sediments. In this study, we provide for the first time a comparative survey of the sediment-associated microbial communities from these three neighbouring vent fields. Sediment samples collected in the Menez Gwen, Lucky Strike and Rainbow vent fields showed significant differences in trace-metal concentrations and associated microbiomes. The taxonomic profiles of bacterial, archaeal and eukaryotic representatives were assessed by rRNA gene-tag pyrosequencing, identified anaerobic methanogens and microaerobic Epsilonproteobacteria, particularly at the Menez Gwen site, suggesting sediment communities potentially enriched in sub-seafloor microbes rather than from pelagic microbial taxa. Cosmopolitan OTUs were also detected mostly at Lucky Strike and Rainbow sites and affiliated with the bacterial clades JTB255, Sh765B-TzT-29, Rhodospirillaceae and OCS155 marine group and with the archaeal Marine Group I. Some variations in the community composition along the sediment depth were revealed. Elemental contents and hydrothermal influence are suggested as being reflected in the composition of the microbial assemblages in the sediments of the three vent fields. Altogether, these findings represent valuable information for the understanding of the microbial distribution and potential ecological roles in deep-sea hydrothermal fields.

Draft Genome Sequence for the Type Strain Vulcanibacillus modesticaldus BR, a Strictly Anaerobic, Moderately Thermophilic, and Nitrate-Reducing Bacterium Isolated from Deep-Sea Hydrothermal Vents of the Mid-Atlantic Ridge.

Vulcanibacillus modesticaldus BRT was isolated from calcite-rich, metalliferous core samples collected at the Rainbow deep-sea hydrothermal vent field on the Mid-Atlantic Ridge. Here, we report the 2.2-Mb draft genome sequence for this strain, consisting of 100 contigs with a G+C content of 33.6% and 2,227 protein-coding sequences.

A New Deep-Sea Hydrothermal Vent Species of Ostracoda (Crustacea) from the Western Pacific: Implications for Adaptation, Endemism, and Dispersal of Ostracodes in Chemosynthetic Systems.

Deep-sea hydrothermal vent fields are among the most extreme habitats on Earth. Major research interests in these ecosystems have focused on the anomalous macrofauna, which are nourished by chemoautotrophic bacterial endosymbionts. In contrast, the meiofauna is largely overlooked in this chemosynthetic environment. The present study describes a new species, Thomontocypris shimanagai sp. nov. (Crustacea: Ostracoda), which was collected from the surface of colonies of neoverrucid barnacles and paralvinellid worms on the chimneys at the Myojin-sho submarine caldera. This is the first discovery of an ostracode from deep-sea hydrothermal vent environments in the western Pacific region. In addition to the species description, we discuss three aspects: 1) adaptation, 2) endemism, and 3) dispersal strategy of the hydrothermal vent ostracodes. Regarding these aspects, we conclude the following: 1) the new species may feed on sloughed-off tissues, mucus secretions, or fecal pellets of sessile organisms, rather than depend on chemoautotrophic bacteria as symbionts for energy; 2) as has been pointed out by other studies, Thomontocypris does not likely represent a vent-specific genus; however, this new species is considered to be endemic at the species level, as it has not been found outside of the type locality; and 3) this new species may have migrated from adjacent deep-sea chemosynthesis-based habitats, such as hydrothermal vents, with wood falls potentially having acted as stepping stones.

Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field.

A Gram-stain-negative, short rod-shaped bacterium, designated 9-2T, was isolated from a sediment sample collected from a hydrothermal vent field on the south-west Indian Ridge. It formed red colonies, produced carotenoid-like pigments and did not produce bacteriochlorophyll a. Strain 9-2T was positive for hydrolysis of DNA, gelatin and starch, but negative for hydrolysis of aesculin and Tween 60. The sole respiratory quinone was menaquinone-7 (MK-7). The main polar lipids consisted of phosphatidylethanolamine, one unidentified phospholipid and two unidentified polar lipids. The principal fatty acids (>5%) were summed feature 4 (iso-C17:1 I and/or anteiso-C17:1 B), iso-C15:0 and iso-C17:0 3-OH. The genomic DNA G+C content was 49.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain 9-2T should be assigned to the genus Pontibacter. Levels of 16S rRNA gene sequence similarity between the new isolate and the type strains of Pontibacter species with validly published names were in the range 94.0-96.5%. On the basis of phenotypic and genotypic data, strain 9-2T represents a novel species of the genus Pontibacter, for which the name Pontibacter amylolyticus sp. nov. is proposed. The type strain is 9-2T (=CGMCC 1.12749T=JCM 19653T=MCCC 1K00278T).

Effect of depth and vent fluid composition on the carbon sources at two neighboring deep-sea hydrothermal vent fields (Mid-Cayman Rise)

In this study, we have used stable isotopes of megafauna, microbial mats and particulate organic matter to examine the effect of depth and vent fluid composition on the carbon sources at two proximal, chemically distinct hydrothermal vent fields along the Mid-Cayman Rise. The basalt hosted Piccard vent field (4980m) is twice as deep as the ultramafic hosted Von Damm vent field (2300m) and has very different faunal assemblages. Of particular note is the presence of seep-associated fauna, Escarpia and Lamellibrachia tubeworms, at the Von Damm vent field.We identify a greater range of carbon sources and a suggestion of increased photosynthetic inputs to the Von Damm vent field compared to Piccard vent field. Rimicaris hybisae shrimp are the only abundant species shared between the two vent fields with δ13C values ranging between −22.7 and −10.1‰. Higher concentrations of hydrogen sulfide in the vent fluids at Piccard is proposed to be responsible for varying the relative contributions of the carbon fixation cycles used by their epibionts. Seep-associated fauna at Von Damm rely on elevated, thermogenic hydrocarbon content of the vent fluids for their carbon source (δ13C values ranging from −21.3 to 11.6‰). They also derive energy from hydrogen sulfide formed by the microbial reduction of sulfide (δ34S values ranging from −10.2 to −6.9‰). The tubeworms have very short roots (buried at most a centimeter into rubble), suggesting that microbial sulfate reduction must be occurring either in the shallow subsurface and/or in the anterior part of the tube. Overall, megafauna at Von Damm vent field appear to have a smaller food chain length (smaller δ15N range) but a greater breadth of trophic resources compared to the megafauna at the Piccard vent field.

Rapid colonisation by nematodes on organic and inorganic substrata deployed at the deep-sea Lucky Strike hydrothermal vent field (Mid-Atlantic Ridge)

Despite the fragmented nature of hydrothermal vent (HV) fields, nascent vent sites are rapidly colonized by a pool of regional species. While succession of large animals at vents is relatively well established, we lack information on the associated meiofauna, in particular, on nematodes. The aim of the present study is to investigate the process of colonisation after 9 months of organic (wood and bone) and inorganic (slate) substrata by nematode assemblages deployed at the Eiffel Tower hydrothermal edifice on the Lucky Strike vent field on the Mid-Atlantic Ridge (MAR), at varying distances from visible hydrothermal activity. Abundance, biomass and diversity of colonising nematodes were compared with the results from an earlier similar two-year experiment. Near the vents, nematodes preferred inorganic substrata while in areas not influenced by vent activity, organic substrata were preferred. Nematode females dominated at almost all sites while numerous females at the ovigerous stage and juveniles were reported near the vent emissions, suggesting that nematode populations reproduce well after just 9 months. Our nine-month experiment on the MAR showed that the type of substratum influenced significantly the composition of colonising nematodes, while after two years, the community structure was instead influenced by hydrothermal activity.

Thermophilic hydrogen-producing bacteria inhabiting deep-sea hydrothermal environments represented by Caloranaerobacter

Hydrogen is an important energy source for deep-sea hydrothermal vent ecosystems. However, little is known about microbes and their role in hydrogen turnover in the environment. In this study, the diversity and physiological characteristics of fermentative hydrogen-producing microbes from deep-sea hydrothermal vent fields were described for the first time. Seven enrichments were obtained from hydrothermal vent sulfides collected from the Southwest Indian Ocean, East Pacific and South Atlantic. 16S rRNA gene analysis revealed that members of the Caloranaerobacter genus were the dominant component in these enrichments. Subsequently, three thermophilic hydrogen producers, strains H363, H53214 and DY22619, were isolated. They were phylogenetically related to species of the genus Caloranaerobacter. The H2 yields of strains H363, H53214, DY22619 and MV107, which was the type species of genus Caloranaerobacter, were 0.11, 1.21, 3.13 and 2.85 mol H2/mol glucose, respectively. Determination of the main soluble metabolites revealed that strains H363, H53214 and MV107 performed heterolactic fermentations, while strain DY22619 performed butyric acid fermentation, indicating distinct fermentation patterns among members of the genus. Finally, a diversity of forms of [FeFe]-hydrogenase with different modular structures was revealed based on draft genomic data of Caloranaerobacter strains. This highlights the complexity of hydrogen metabolism in Caloranaerobacter, reflecting adaptations to environmental conditions in hydrothermal vent systems. Collectively, results suggested that Caloranaerobacter species might be ubiquitous and play a role in biological hydrogen generation in deep-sea hydrothermal vent fields.