Apple (Malus domestica) is a highly valuable fruit that is produced in significant amounts by ten countries and is exported worldwide. Phytosanitary treatment of apples is necessary to limit the spread of destructive pests. Ionizing irradiation is a highly effective non-thermal phytosanitary treatment that is gaining popularity worldwide, as it is an environmentally friendly and chemical-free technique of pest and pathogen control. Irradiation does, however, impact the physiology of the fruit and elicit radiation-induced oxidative stress. This work investigated the transcriptome responses of ‘Granny Smith’ apples subjected to 310 Gy x-ray irradiation after seven days at room temperature (RT) and after 90 days of cold storage, followed by seven days at RT. Extensive transcriptome changes were observed in response to treatment and storage. Early fruit responses included upregulation of pathways involved in cell and DNA repair mechanisms. Drastic shifts in hormone signaling pathways were also observed, as evidenced by the downregulation of auxin and ethylene pathways and the upregulation of salicylic acid and abscisic acid pathways in response to x-ray treatment. Genes encoding various reactive oxygen species scavenging and detoxifying enzymes were upregulated in response to the radiation-induced oxidative stress. The differentially expressed genes identified in this work represent the first comprehensive analysis of apple fruit responses to the commercially used dose of x-ray irradiation. These results will be useful in optimizing future irradiation treatments to minimize post-harvest physiological disorders in apples and preserve quality.
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