This study aimed to investigate factors affecting the discarded semen of boars. A total of 176,368 ejaculates of boars from nine AI centers were collected from January 2013 to May 2016 in Southern China. The criteria for determining whether their semen was abnormal included cytoplasmic droplets, coiling tail, sperm agglutination, impurity, poor motility, oligozoospermia, necrozoospermia, azoospermia, and hemospermia. The cause of discarded semen was evaluated with a Chi-square test, and the effects of housing type, breed, age at collection, season identified in the northern hemisphere, and age at herd entry of the discarded semen of boars were analyzed with a logistic regression model. Results indicated the proportion of the discarded semen (PDS) in the nine AI centers was 13.09%. Chi-square test showed the greatest PDS among all causes was found in semen discarded due to cytoplasmic droplets (31.60%), followed by impurity (25.96%), sperm agglutination (20.31%), coiling tail (17.72%), oligozoospermia (10.86%), and others (6.78%; P < 0.0001). Logistic regression analysis revealed the PDS was affected by all these five factors (P < 0.0001). The PDS of boars raised individually in stalls was greater than that of boars raised individually in pens (OR: 1.657; 95% CI: 1.607 to 1.709). The PDSs of Duroc boars (OR: 1.130; 95% CI: 1.093 to 1.167) and Yorkshire boars (OR: 1.432; 95% CI: 1.380 to 1.486) were greater than that of Landrace boars. The PDSs of adult boars (aged from 13 to 24 mo, from 25 to 36 mo, and more than 37 mo with OR: 0.800, 0.941, and 0.838, respectively; 95% CI: 0.771 to 0.831, 0.902 to 0.983, and 0.790 to 0.889, respectively) were lower than those of young boars (aged less than 12 mo). The PDSs of semen collected in summer (OR: 1.367; 95% CI: 1.314 to 1.422), autumn (OR: 1.185; 95% CI: 1.138 to 1.234), and winter (OR: 1.159; 95% CI: 1.115 to 1.206) were greater than those of semen obtained in spring. The PDSs of boars introduced at ages of 5–7 mo (OR: 1.432; 95% CI: 1.380 to 1.486) and 10–12 mo (OR: 1.432; 95% CI: 1.380 to 1.486) were greater than those of boars introduced at an age of 8 and 9 mo. In conclusion, logistic regression analysis reveals discarded semen is affected by housing type, breed, age at collection, season, and age at herd entry. More importantly, cytoplasmic droplets is the primary reason for discarding boar semen, and 8 months at herd entry is the most suitable age for boar introduction.