The study aims to treat high strength domestic wastewater (HSDW) and cultivate microbial granular sludge in a sequencing batch reactor (SBR). A bench-scale bioreactor was used for startup. Response surface methodology (RSM) was used to determine the ideal parameters for removing organic materials from HSDW. Organic loading rate (OLR) and cycle time were the independent variables taken into consideration, while the response variable was COD removal. Results from RSM revealed that the optimal conditions for achieving > 98 % COD and TP (>80) removal were a cycle length of 6 h and an OLR of 1.5 kgCOD/m3d. The Modified-Kincannon and the Grau second-order kinetic models were compared to the COD removal rate for the SBR system. The saturation rate constant (Ni) and maximal substrate removal rate (Vc) were proposed to be 6.8 g L−1 d−1 and 0.83 g L−1 d−1, respectively, based on the modified Stover-Kincannon model. The modified Stover-Kincannon (R2 = 0.93673) and Grau second order (R2 = 0.99219) models high correlation coefficient values show that the experimental results and the prediction for the microbial aerobic granular based SBR system accord well. It was discovered that the modified Stover-Kincannon model was less suitable than the Grau second order model. The system microbial community changed because of the granulation process, as the reactor design operation had a big impact on the community structure. Decreased filamentous bacteria favoured several taxa that have been found to exist in granular biomass that is appropriate for treating wastewater. This study sheds important light on the complex interactions that occur between microbial populations and operational variables all through the granulation process in SBR.