Cyanovinyl Group Research Articles

Crystal structure of rilpivirine hydrochloride, N6H19C22Cl

A monoclinic C form of rilpivirine hydrochloride, (N6H19C22)Cl, has been obtained and characterized using solid-state 15N, 13C, and 35Cl NMR spectroscopy and multitemperature synchrotron X-ray powder diffraction. The title compound crystallizes in the monoclinic system (space group C2/c, #15) at both room (295.0(2) K) and low (100.0(2) K) temperatures. At room temperature, the following parameters are a = 19.43051(3), b = 13.09431(14), c = 17.10254(18) Å, β = 109.3937(7), V = 4104.48(9) Å3, and Z = 8. The folded molecular conformation of the cation is similar with that of free base rilpivirine with the exception of cyanovinyl group disposition. The anion links cations to infinite chains parallel to the crystallographic c axis using N–H⋯Cl bonds where both amino groups and the protonated pyrimidine ring take part in the H-bonding. The powder patterns have been submitted to the ICDD for inclusion in the Powder Diffraction File™ (PDF®).

Role of π-bridge and strong solid-state emission in triphenylamine-benzothiazole based nonlinear optical dyes

Triphenylamine and benzothiazole together form an effective electron donor and acceptor pair, producing a strong and versatile fluorophore. By adjusting the π-bridge between this D-A pair, the fluorescence quantum yield, two-photon absorption cross-section, and current density of electroluminescence devices can be fine-tuned. Three chromophores, namely APCN, ADPCN, and ATCN, featuring phenyl, diphenyl, and thiophene as π-bridges, exhibited fluorescence and solvatochromic properties in solution. When the solubility of solvent was reduced, the fluorescence became even more pronounced due to aggregation. The addition of the cyanovinyl group facilitated this aggregation-induced emission enhancement (AIEE)-like effect, leading to stronger emission rather than radiationless relaxation in the solid state. Moreover, the intramolecular charge transfer improved the nonlinear response, while the coexistence of AIE ensured two-photon excitation fluorescence in solid species. Among the chromophores, ADPCN with a biphenyl π-bridge showed relatively good performance. Additionally, preliminary tests of electroluminescent devices demonstrated their potential as efficient emitting materials. This systematic exploration revealed the impact of organic functional groups on photophysical properties and provided a platform for developing highly fluorescent materials.

The effect of different π-bridge configuration on bi-anchored triphenylamine and phenyl modified triphenylamine based dyes for dye sensitized solar cell (DSSC) application: A theoretical approach

Twenty eight bi-anchored triphenylamine (TH-1 to TH-14) and phenyl modified triphenylamine (PH-TH-1 to PH-TH-14) based metal free organic dyes are designed for DSSC application. The electronic effect of different π-bridge configurations in donor-π-bridge-acceptor (D-π-A)2 structure was theoretically simulated and verified using density functional theory (DFT) and time dependent density functional theory (TD-DFT). The triphenylamine and phenyl modified triphenylamine groups are used as donor and cyanoacrylic acid group is used as acceptor. Thiophene and cyanovinyl groups are used as π-bridge. The ground state molecular structure was optimized by density functional theory and the electronic absorption spectra were calculated by time dependent density functional theory. The light harvesting efficiency (LHE), dye regeneration energy (ΔGreg) and electron injection energy (ΔGinject) are determined by computational examination. It is observed that, when the number of π-bridge increases, the band gap of the dye decreases. Also the absorption maximum and molar extinction coefficient of the dyes are increased. Theoretical result shows that the thiophene-cyanovinyl and thiophene-thiophene-cyanovinyl–cyanovinyl configurations give broader and red shifted absorption spectrum compared to other configurations. Also the results of phenyl modified triphenylamine (PH-TH) dyes clearly show better absorption and dye regeneration energy compared to TH dyes.

Substituent and Charge Transfer Effects on Memory Behavior of the Ambipolar Poly(triphenylamine)s.

A series of poly(triphneylamine)s (CN-PTPA, 2CN-PTPA, 3CN-PTPA, and NO2-PTPA) with pendent acceptors (cyano, dicyanovinyl, tricyanovinyl, and nitro) have been readily synthesized by oxidative coupling polymerization using FeCl3 as oxidant. The tunable memory properties of the ITO/polymer/Al sandwiched memory devices including DRAM, SRAM, and WORM could be achieved by introducing substituent acceptors with different extent of electronic delocalization and electron-withdrawing intensity into the poly(triphenylamine)s. The highly fluorescent CN-PTPA exhibited volatile DRAM memory characteristic due to the large band gap and weak intramolecular charge transfer capability. 2CN-PTPA and 3CN-PTPA showed volatile SRAM memory property with retention time of 5 and 14 min, respectively, depending on electron-withdrawing capability of the acceptors. Furthermore, NO2-PTPA afforded nonvolatile WORM memory behavior attributed to the charge could be trapped into the nonconjugated nitro group even though the dipole moment and electron-withdrawing capability of nitro group were weaker than cyanovinyl groups. Moreover, except NO2-PTPA, all the devices derived from cyano-containing ambipolar polymers including CN-PTPA, 2CN-PTPA, and 3CN-PTPA could be switched to the ON state and exhibited WORM memory behavior in positive unipolar I-V switching. This phenomenon indicated that the Al atoms preferentially interact with poly(triphneylamine)s containing cyano than nitro substituents.

DNA photo-cross-linking using 3-cyanovinylcarbazole modified oligonucleotide with threoninol linker.

3-Cyanovinylcarbazole modified D-threoninol ((CNV)D) was incorporated in oligodeoxyribonucleotide and tested for a photo-cross-linking reaction with complementary oligodeoxyribonucleotide. The photoreactivity was 1.8- to 8-fold greater than that of 3-cyanovinylcarbazole modified deoxyribose ((CNV)K) previously reported. From the results of melting analysis and circular dichroism spectroscopy of the duplexes, the relatively flexible structure of (CNV)D compared with (CNV)K might be advantageous for [2 + 2] photocycloaddition between the cyanovinyl group on the (CNV)D and pyrimidine base in the complementary strand.

Comparative Interface Metrics for Metal-Free Monolayer-Based Dye-Sensitized Solar Cells

The first quantitative comparison between self-assembled monolayers of homologous carboxylate- and phosphonate-terminated organic dyes that are of use in dye-sensitized solar cells (DSSCs) is reported. (Cyanovinyl)phosphonate-terminated oligothiophenes and (cyanovinyl)carboxylate-terminated oligothiophenes were synthesized on TiO(2) thin film electrodes. Structurally analogous organics were compared for the effect of the anchoring groups on photochemical properties in solution as measured by UV/vis spectroscopy and for reactivity with the electrode surface. Monolayers were grown on the TiO(2) electrodes either by "tethering by aggregation and growth" (T-BAG) or by solution dipping. Surface roughness and homogeneity, elemental composition, and thickness of the monolayers were evaluated by atomic force microscopy (AFM), X-ray photoelectron spectroscopy (XPS), and ellipsometry. Molecular loadings for each monolayer on TiO(2) were quantified by quartz crystal microgravimetry (QCM), and the stability of bonding between each class of dyes and the TiO(2) was evaluated by measuring desorption, also by QCM; the carboxylates underwent significant dissociation in aqueous media but the phosphonates did not. DSSCs were prepared from each congener and from simple oligothiophene phosphonates to determine the effect of the cyanovinyl group on device behavior; all DSSCs were studied under irradiation from a AM 1.5G solar light source; the effect of cyanovinyl group termination was comparable to that of adding a thiophene moiety, and the DSSC using a self-assembled monolayer of (sexithiophene)phosphonate (6TP) had total power conversion efficiency (η) of ca. 5%.

Efficient discovery of potent anti-HIV agents targeting the Tyr181Cys variant of HIV reverse transcriptase.

Non-nucleoside reverse transcriptase inhibitors (NNRTIs) that interfere with the replication of human immunodeficiency virus (HIV) are being pursued with guidance from molecular modeling including free-energy perturbation (FEP) calculations for protein-inhibitor binding affinities. The previously reported pyrimidinylphenylamine 1 and its chloro analogue 2 are potent anti-HIV agents; they inhibit replication of wild-type HIV-1 in infected human T-cells with EC(50) values of 2 and 10 nM, respectively. However, they show no activity against viral strains containing the Tyr181Cys (Y181C) mutation in HIV-RT. Modeling indicates that the problem is likely associated with extensive interaction between the dimethylallyloxy substituent and Tyr181. As an alternative, a phenoxy group is computed to be oriented in a manner diminishing the contact with Tyr181. However, this replacement leads to a roughly 1000-fold loss of activity for 3 (2.5 μM). The present report details the efficient, computationally driven evolution of 3 to novel NNRTIs with sub-10 nM potency toward both wild-type HIV-1 and Y181C-containing variants. The critical contributors were FEP substituent scans for the phenoxy and pyrimidine rings and recognition of potential benefits of addition of a cyanovinyl group to the phenoxy ring.

Synthesis of polymers containing regularly distributed tetrathia‐[7]‐elicene units along the backbone

AbstractA tetrathia‐[7]‐helicene bearing in the 2 and 13 positions cyanovinyl groups was used as comonomer in the Michael‐type polyaddition reaction with N,N′‐bis(β‐mercaptoethyl)piperazine. This led to a new polymer bearing tetrathia‐[7]‐helicene units regularly distributed along the polymer backbone, which may be regarded as the first example of a new family of potentially useful nonlinear optical materials. All products were structurally characterized by 1H and 13C NMR spectroscopy. Differential scanning calorimetry characterizations revealed the presence, in both monomeric and polymeric helicenes, of glass‐transition like temperatures, associated to some conformational variation of the helicene units. The optical properties, the film formation and the morphology of the polymer‐containing tetratia‐[7]‐helicenes were also investigated. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010

Synthesis and electronic properties of terthienyls β-substituted by (thienyl)cyanovinylene groups

Terthienyls functionalized at their two outer β,β′-positions by 2- and 3-(thienyl)cyanovinyl groups have been synthesized by basic condensation. The analysis of their electronic properties by UV–vis spectroscopy and cyclic voltammetry shows that the mode of derivatization affects essentially the LUMO level of the conjugated system.

Organic Dyes Containing a Cyanovinyl Entity in the Spacer for Solar Cells Applications

Series of dyes containing a cyanovinyl entity in the spacer have been developed and characterized. Dye-sensitized solar cells (DSSCs) using the dyes as the sensitizers exhibited good efficiencies ranging from 3.48−4.92%, which reached 45−70% with respect to that of an N719-based device fabricated under similar conditions. In general, better DSSC performances are observed with molecules having a shorter distance between the internal cyanovinyl entity and the amine donor. Computational analysis indicated that the cyanovinyl entity may behave as a charge trap, especially in the long molecules studied, where the cyanovinyl group is away from the electron-donating amine by two or more aromatic groups. A positive correlation is observed between the theoretically calculated product of oscillator strengths and the charge shift at the cyanoacrylic acid group and the measured short-circuit current in DSSCs. Therefore, it is likely that the charge-trapping in the cyanovinyl entity reduces the electronic interaction between the dye and the attached TiO2 and, therefore, compromises the DSSC performance.

High-resolution structures of HIV-1 reverse transcriptase/TMC278 complexes: Strategic flexibility explains potency against resistance mutations

TMC278 is a diarylpyrimidine (DAPY) nonnucleoside reverse transcriptase inhibitor (NNRTI) that is highly effective in treating wild-type and drug-resistant HIV-1 infections in clinical trials at relatively low doses ( approximately 25-75 mg/day). We have determined the structure of wild-type HIV-1 RT complexed with TMC278 at 1.8 A resolution, using an RT crystal form engineered by systematic RT mutagenesis. This high-resolution structure reveals that the cyanovinyl group of TMC278 is positioned in a hydrophobic tunnel connecting the NNRTI-binding pocket to the nucleic acid-binding cleft. The crystal structures of TMC278 in complexes with the double mutant K103N/Y181C (2.1 A) and L100I/K103N HIV-1 RTs (2.9 A) demonstrated that TMC278 adapts to bind mutant RTs. In the K103N/Y181C RT/TMC278 structure, loss of the aromatic ring interaction caused by the Y181C mutation is counterbalanced by interactions between the cyanovinyl group of TMC278 and the aromatic side chain of Y183, which is facilitated by an approximately 1.5 A shift of the conserved Y(183)MDD motif. In the L100I/K103N RT/TMC278 structure, the binding mode of TMC278 is significantly altered so that the drug conforms to changes in the binding pocket primarily caused by the L100I mutation. The flexible binding pocket acts as a molecular "shrink wrap" that makes a shape complementary to the optimized TMC278 in wild-type and drug-resistant forms of HIV-1 RT. The crystal structures provide a better understanding of how the flexibility of an inhibitor can compensate for drug-resistance mutations.

Preparation, Characterization, Molecular and Electronic Structures, TDDFT, and TDDFT/PCM Study of the Solvatochromism in Cyanovinylferrocenes

Cis and trans isomers of ferrocene-based donor-acceptor assemblies, Fc-C(I)=CH(I), Fc-C(I)=CH(CN), and Fc-C(CN)=CH(CN) (Fc is ferrocene), along with the Fc-C(CN)=C(CN)2 complex have been prepared and characterized by 1H, 13C, gHMQC, and gHMBC NMR spectra, IR, UV-vis, and MCD spectroscopy methods, as well as elemental analyses. The oxidation potentials, investigated by cyclic voltammetry, of all donor-acceptor assemblies are in agreement with the electron-acceptor strength of the substituents attached to the ferrocene core. X-ray crystallography studies of cis and trans isomers of Fc-C(I)=CH(CN) and Fc-C(CN)=CH(CN) reveal a significant rotational flexibility of the cyanovinyl group, which was explained on the basis of semiempirical PM3 calculations. Electronic structures and solvatochromic properties of all complexes were investigated by UV-vis spectroscopy, density functional theory (DFT), time-dependent DFT (TDDFT), and polarized continuum model (PCM) TDDFT approaches. The calculated vertical excitation energies and magnitudes of solvatochromic effect are consistent with the experimental data and clearly suggest the dominance of metal-to-ligand charge-transfer bands in the visible region of the UV-vis spectra for all complexes.

ChemInform Abstract: Synthesis and anti‐HIV Activity of Thymidine Analogues Bearing a 4′‐Cyanovinyl Group and Some Derivatives Thereof.

AbstractChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.

The di-π-methane rearrangement of systems with simple vinyl moieties : Mechanistic and exploratory organic photochemistry

3,3-Dimethyl-1,1-diphenyl-1,4-pentadiene and two 5-substituted derivatives were synthesized and studied. The regioselectivity, stereochemistry, quantum efficiency, multiplicity, and excited state reaction rates were studied in each case. The parent hydrocarbon, 5-MeO-derivative, and 5-cyano-diene—all rearranged on direct irradiation to give vinylcyclopropanes. The first compound led to 3,3-dimethyl-2,2-diphenyl-1-vinylcyclopropane. The second afforded 3,3-dimethyl-2,2-diphenyl-1-(2'-methoxyvinyl)cyclopropane. The last gave 1-cyano-3,3-dimethyl-2-(2',2'-diphenylvinyl)cyclopropane. Thus, the vinyl and methoxyvinyl groups survive in the products intact, while the cyanovinyl group is incorporated in the three-ring. In the two substituted dienes, cis-reactant gave cis-product and trans-reactant gave trans-product, both where the substituent was on the vinyl group of the product and where it became a ring substituent. The substituted di-π-methane systems underwent only cis-trans isomerization on sensitization, while the parent, unsubstituted diene led to di-π-methane product on sensitized as well as direct photolysis. While the quantum yields for the hydrocarbon diene were the same at room temperature for the direct and sensitized runs, only the sensitized runs showed a temperature dependence of efficiency with a dramatic, 5-fold increase on a 46° temperature increase. Thus, evidence was obtained for a singlet rearrangement in all cases and a triplet process only in the case of the unsubstituted diene. A sizable activation energy was seen for the triplet but not for the singlet. The room temperature quantum yields in the direct irradiations were: φ(parent diene)=0.011, φ( trans-methoxydiene)=0.051, φ( cis-methoxy-diene)= 0.050, φ( trans-cyanodiene)=0.36, and φ( cis-cyano-diene) = 0.20. A competing side reaction was cis-trans isomerization but these quantum yields were lower. Single photon counting was employed to obtain excited singlet reaction and decay rates at low temperature (i.e. 77°K) and the method of magic multipliers was used to obtain room temperature rates. These were: k r(parent diene) = 4.7 × 10 8 sec −1, k r( trans-cyano-diene)= 1.5 ×10 10 sec −1, k r( cis-cyano-diene)= 8.0 × 10 9sec −1, and k r( trans-methoxy-diene) = 1.9 × 10 9 sec −1. The results are discussed in terms of excited state molecular structure. An SCF-CI molecular orbital treatment of the reaction was developed. This used a cyclopropyldicarbinyl diradical species, with Walsh cyclopropane basis orbitals, as representing the half-reacted species. The energy of formation of this species from vertical excited state reactant was calculated for all three dienes and an excellent correlation with observed excited singlet rates was obtained. Similarly, dissection of the excited diradical energy into bond components led to a correlation between regioselectivity and weakness of the three-ring bond broken in the regioselectivity-determining step. Evidence was adduced for localization of the excitation energy in S 1 of reactant in the diphenylvinyl chromophore with migration of electronic excitation into the cyclopropyldicarbinyl diradical moiety during the vinyl-vinyl bridging process. A general method for quantitatively partitioning excitation energy was developed and applied to the case in hand. Finally, there was predicted a greater probability of di-π-methane three-ring fission in the excited state compared to the diradical ground state where Grob fragmentation proved energetically more favorable.