Facilitated electrochemical properties of plasma are crucial for improving functional nanomaterials synthesis and design for novel sensor development. Controlled customization and functionality tailoring at multiscale is the targeted challenge for better detection devices performance. In the modern era of optoelectronics, among various probing approaches, plasmonic sensing accompanied by Raman, FTIR or Fluorescent spectroscopy is considered a tool for the efficient investigation of molecular properties. In particular, Raman scattering is often called SERS (surface-enhanced Raman scattering) due to plasmonic enhancers, which are used to improve the probing of analytes at a reduced scale. This feature is extremely useful for biologically relevant analytical tasks when samples alike DNA and similar need to be investigated fast and accurately. DNA/RNA-related investigations are highly important in modern nanomedicine due to the solid progress of bionanotechnology, DNA vaccines, and functional gene engineering. DNA is the most valued substance for microbiologists because it contains information about bio-species' nature.[1] Currently, the number of molecular-sensitive methods for DNA-level study is quite limited, among which PCR (polymer chain reaction) related methods dominate the field. However, it is challenging to investigate it with optical techniques like SERS. Despite being promising, SERS is still under technological and analytical improvement. Better performance comes with sophisticated plasmonic nanomaterials, which provide considerably improved photon scattering due to the strongly localized field confinement effect.[2] In the current report, a well-performing nanoplasmonic sensor was designed using a plasma-driven electrochemical reduction mechanism. Exploiting atmospheric pressure He-plasma jet setup operating kHz frequency, the reactive oxidative species donated electrons via liquid-gas electrochemistry towards the Ar-delivered Au(3+)-containing microdroplets. Through this method, microscaled aggregates composed of AuNPs were obtained from the nebulized ionic gold liquid precursor. Due to the strong coupling between nanoparticles, a high analytical enhancement factor of about 107 was achieved and the substrate allowed to obtain Raman fingerprints of bacterial DNA fragments (M. luteus and S. aureus, E. coli, J. lividum) at nanovolume sample quantities. In addition, main DNA molecular vibrational signatures associated with nucleobase motions were extracted from spectra collected and used to classify the bacterial strains reliably by employing statistical principal component analysis.