The distribution of total dry weight of zooplankton, copepod numbers and ichthyoplankton across the outer continental shelf in the central Great Barrier Reef was examined at bi-weekly intervals for three months over summer of 1983. Copepods were sampled (236 μm net) within 10 m of the surface and within 10 m of the bottom. Mean densities in surface waters decreased markedly from the mid-shelf to outer shelf and the Coral Sea, but no cross-shelf gradient occurred in the bottom-water. Densities of copepods on the mid-shelf (surface and bottom waters) and in bottom-waters of the outer shelf were typically ca. 400 m−3. Significantly lower densities (ca. 100 m−3) occurred in surface waters of the outer shelf, except during outbursts of Acartia australis, when densities in these waters differed little from those elsewhere on the shelf. In oceanic waters, 10 km from the outer shelf station, copepod densities in surface waters were ca. 40 m−3. Four of the five most abundant copepod taxa in surface waters, Paracalanus spp., Eucalanus crassus, Acrocalanus gracilis and Canthocalanus pauper, tended to be most abundant at the mid-shelf end of the transect. Acartia australis was sporadically very abundant in surface waters of the outer shelf, as was Paracalanus spp. in bottom-water of the outer shelf. An assemblage of Coral Sea species of copepod occurred in bottom-water of the outer shelf during two major intrusions, but not at other times. Densities of all common species varied considerably between cruises. Maximum densities of all common species except A. australis tended to be associated with diatom blooms linked to intrusions but a bloom did not necessarily mean all common species were abundant. Fish larvae included both reef and non-reef taxa, with reef taxa predominating on the outer shelf (approx 2:1 in density of individuals) and non-reef taxa dominating in nearshore samples (approx 2:1). Nine of the ten most abundant taxa analysed showed highly significant variation in numbers among stations and all but one of these also exhibited significant station x cruise interactions. Interactions generally reflected changes in the rank importance of adjacent stations from one cruise to the next or lack of any significant cross-shelf variation on some cruises where overall abundance of the taxa was low.