Context or problemThe extensive use of chemical fertilizers and pesticides in modern agriculture, particularly since the green revolution, has led to profound consequences for agricultural ecosystems. This approach, while initially boosting yields, has disrupted soil health, biodiversity, and environmental balance. Moreover, it contributes silently to global climate change by releasing greenhouse gases. These challenges underscore the urgent need for a shift towards sustainable agricultural practices to safeguard soil health, biodiversity, and human nutrition while mitigating the impacts of climate change. Objective or research questionThe primary objective of this study is to assess the impact of the long-term (seventeen years) application of organic nutrient management on the physicochemical properties of basmati rice soil and its nutritional quality. The study aims to understand the effectiveness of different organic nutrient management practices in mitigating the negative consequences associated with conventional agricultural practices. MethodsThe experiment used a strip-plot design with three replications, assigning two cropping systems (basmati rice-wheat-green gram and basmati rice-wheat-sesbania) to vertical strips. Seven nutrient management practices, including control, farmyard manure (FYM), vermicompost, farmyard manure + crop residues, vermicompost + crop residues, farmyard manure + crop residues + biofertilizers, and vermicompost + crop residues + biofertilizers [nitrogen-fixing Azospirillum, phosphorus-solubilizing bacteria (PSB), potassium-solubilizing bacteria (KSB), and a cellulolytic culture (Aspergillus awamori, Trichoderma viride, Phanerochaete chrysosporium, and Aspergillus wululens)] were applied to the horizontal strips. ResultsThe findings show that the cropping system with sesbania green manure significantly improved soil physicochemical attributes, nutritional content, and basmati rice yield compared to the green gram-based system. Continued application of organic manures, crop residues, and biofertilizers notably enhanced soil fertility, grain quality, and basmati rice productivity. The combined use of vermicompost, wheat residue, biofertilizers, and sesbania green manure treatment increased organic carbon content by 78.7% over the control, and soil available nitrogen, phosphorus, and potassium by 38.3–54.9%, 57.6–143.8%, and 27.9–64.1%, respectively. Additionally, it augmented diethylenetriamine pentaacetic acid extractable iron, zinc, manganese, and copper content by up to 44.2%, 28.5%, 57.9%, and 71.0%, respectively. Co-application of the above organic sources also significantly enhanced grain and straw yields by 74.5–80.1% and 46.1–50.0%, respectively, compared to the control. ConclusionsEnhancing Basmati rice yield and quality in the Indo-Gangetic Plains can be sustainably achieved through sesbania green manuring and organic practices. Positive correlations with key soil parameters emphasize the significance of organic farming for long-term sustainability. Implications and significanceThe study suggests that adopting organic practices, including sesbania green manuring and combining organic inputs, can alleviate the adverse effects of conventional farming on soil health, biodiversity, and climate change. This aligns with the broader goal of establishing sustainable production and consumption in basmati rice-based cropping systems.