Objective To explore the biomechanical properties of posterior occipital condyle screws compared with common occipitocervical fusion internal fixation and it's impacts upon stress of hypoglossal canals. Methods Finite element models based on the occipitocervical CT data of one 28-year-old male healthy volunteer were built, including normal model, instability model, internal fixation model by occipital condyle screws, internal fixation model by occipital plate screws, and internal fixation model by transarticular screws. Fifty N gravity and 1.5 N·m torque were exerted upon the surface of occipital bone so that the models could perform lateral bending, flexion, extension, and rotational motions. The motion range and stress distribution of internal fixation were compared under varying conditions among different occipitocervical fusion models. In addition, the impact of occipital condyle screw upon hypoglossal canals was examined. Results Compared with instability model, the motion range in the internal fixation model by occipital condyle screws declined by 96.8%, 95.6%, 95.0% and 98.5% respectively in lateral bending, flexion, extension and rotation. In the internal fixation by occipital plate screws, the motion range decreased by 96.3%, 95.7%, 98.4% and 99.6% respectively. In the internal fixation by transarticular screws, the motion range exhibited a decline of 95.7%, 94.0%, 94.3% and 98.9%, respectively. The stress peaks in the occipital condyle screw were 192.4 MPa, 201.6 MPa and 187.6 MPa under lateral bending, flexion, and rotation conditions, respectively. The stress peaks in the occipital plate screw were 279.6 MPa, 213.7 MPa, and 154.1 MPa, respectively. The stress peaks in the transarticular screw were 232.4 MPa, 220.9 MPa, and 224.5 MPa, respectively. The stress impact peak of occipital condyle screw on the hypoglossal canals wall was 12.96 MPa, and the content deformation under the hypoglossal canal was 0.64%. Conclusions The occipital condyle screw internal fixation has similar stability with common occipitocervical fusion fixations. The occipital condyle screw has more uniform stress distribution and less effect on the hypoglossal canals, and hence is safe and reliable as anchor point on the cranial side in occipitocervical fusion. Key words: Cervical vertebrae; Internal fixators; Finite element analysis; Spinal fusion