Covalent Cages Research Articles

Porous covalent cages for visualizing the adsorbed iodine and stabilizing ylide intermediates

Porous covalent cages for visualizing the adsorbed iodine and stabilizing ylide intermediates

Role of Covalent Cages and Rattler Atoms in Lowering the Thermal Conductivity in Zintl Metal Chalcogenides.

Zintl phases represent a class of compounds, mainly intermetallics, which are characterized by ionic and covalent bonds in the same crystal. Since its discovery in the late 1800s, Zintl phases have found their importance as an academic interest due to their fascinating structure as well as in industry due to their vast applicability. In recent years, the Zintl phase of metal chalcogenides has further demonstrated its ability as a promising thermoelectric material, primarily due to its intrinsically ultralow lattice thermal conductivity (κlat). In this viewpoint, we discuss the origin of ultralow κlat in Zintl metal chalcogenides. Our viewpoint illustrates how the characteristic structural features and chemical bonding hierarchy in Zintl phases play a pivotal role in suppressing heat transport and why Zintl metal chalcogenides are one of the promising candidates for future high-performance thermoelectrics.

A Homochiral Porous Organic Cage-Polymer Membrane for Enantioselective Resolution.

Membrane-based enantioselective separation is a promising method for chiral resolution due to its low cost and high efficiency. However, scalable fabrication of chiral separation membranes displaying both high enantioselectivity and high flux of enantiomers is still a challenge. Here, the authors report the preparation of homochiral porous organic cage (Covalent cage 3 (CC3)-R)-based enantioselective thin-film-composite membranes using polyamide (PA) as the matrix, where fully organic and solvent-processable cage crystals have good compatibility with the polymer scaffold. The hierarchical CC3-R channels consist of chiral selective windows and inner cavities, leading to favorable chiral resolution and permeation of enantiomers; the CC3-R/PA composite membranes display an enantiomeric excess of 95.2% for R-(+)-limonene over S-(-)-limonene and a high flux of 99.9mg h-1 m-2. This work sheds light on the use of homochiral porous organic cages for preparing enantioselective membranes and demonstrates a new route for the development of next-generation chiral separation membranes.

Tailored Water-Soluble Covalent Organic Cages for Encapsulation of Pyrene and Information Encryption.

Forming pyridine salts to construct covalent organic cages is an effective strategy for constructing covalent cage compounds. Covalent organic cages based on pyridine salt structures are prone to form water-soluble supramolecular compounds. Herein, we designed and synthesized a triangular prism-shaped hexagonal cage with a larger cavity and relatively flexible conformation. The supramolecular cage structure was also applied to the encapsulation of pyrene and information encryption.

Ditopic Covalent Cage for Ion-Pair Binding: Influence of Anion Complexation on the Cation Exchange Rate.

A new hemicryptophane host with a ditopic molecular cavity combining a cyclotriveratrylene (CTV) unit with a tris-urea moiety was synthesized. The complexation of halides, tetramethylammonium (TMA+) cation, and ion pairs was investigated. A positive cooperativity was observed, since halides display a higher binding constant when a TMA+ cation is already present inside the cage. When TMA+ was complexed alone, a decrease of temperature from 298 K to 230 K was required to switch from a fast to a slow exchange regime on the NMR time scale. Nevertheless, the prior complexation of a halide guest in the lower part of the host resulted in significant decrease of the exchange rate of the subsequent complexation of the TMA+ cation. Under these conditions, the 1H NMR signals characteristic of a slow exchange regime were observed at 298 K. Addition of an excess of salts, increases the ionic strength of the solution, restoring the fast exchange dynamics. This result provides insight on how the exchange rate of a cation guest can be modulated by the complexation of a co-guest anion.

The sharp structural switch of covalent cages mediated by subtle variation of directing groups

It is considered a more formidable task to precisely control the self-assembled products containing purely covalent components, due to a lack of intrinsic templates such as transition metals to suppress entropy loss during self-assembly. Here, we attempt to tackle this challenge by using directing groups. That is, the self-assembly products of condensing a 1:2 mixture of a tetraformyl and a biamine can be precisely controlled by slightly changing the substituent groups in the aldehyde precursor. This is because different directing groups provide hydrogen bonds with different modes to the adjacent imine units, so that the building blocks are endowed with totally different conformations. Each conformation favors the formation of a specific product that is thus produced selectively, including chiral and achiral cages. These results of using a specific directing group to favor a target product pave the way for accomplishing atom economy in synthesizing purely covalent molecules without relying on toxic transition metal templates.

Construction of Covalent Organic Cages with Aggregation‐Induced Emission Characteristics from Metallacages for Mimicking Light‐Harvesting Antenna

AbstractA series of covalent organic cages built from fluorophores capable of aggregation‐induced emission (AIE) were elegantly prepared through the reduction of preorganized M2(LA)3(LB)2‐type metallacages, simultaneously taking advantage of the synthetic accessibility and well‐defined shapes and sizes of metallacages, the good chemical stability of the covalent cages as well as the bright emission of AIE fluorophores. Moreover, the covalent cages could be further post‐synthetically modified into an amide‐functionalized cage with a higher quantum yield. Furthermore, these presented covalent cages proved to be good energy donors and were used to construct light‐harvesting systems employing Nile Red as an energy acceptor. These light‐harvesting systems displayed efficient energy transfer and relatively high antenna effect, which enabled their use as efficient photocatalysts for a dehalogenation reaction. This research provides a new avenue for the development of luminescent covalent cages for light‐harvesting and photocatalysis.

Metallacages and Covalent Cages for Biological Imaging and Therapeutics

Metallacages and Covalent Cages for Biological Imaging and Therapeutics

Self-assembly of a quadrangular prismatic covalent cage templated by zinc ions: A selective fluorescent sensor for palladium ions

Herein we report a covalent cage TPE-Zn4 based on a tetraphenylethylene molecule via subcomponent self-assembly, which is templated by zinc ions. TPE-Zn4 features a quadrangular prismatic cage structure, which is characterized by NMR, mass spectrum, and single-crystal X-ray diffractions. TPE-Zn4 emitted orange fluorescence (λem = 620 nm) in DMSO solution under the irradiation of UV light (λex = 395 nm) and can be applied as a fluorescence sensor for selectively detecting Pd2+. The fluorescence of TPE-Zn4 was quenched by Pd2+ in DMSO solution, and a very low detection limit of 62.3 nM was achieved. Mechanism studies reveal that the Pd2+ can replace the Zn2+, and the heavy atom effect and chelation-enhanced quenching effect between the Pd2+ and the cage probably cause the fluorescence quenching.

A Fluorescent Cage for Supramolecular Sensing of 3‐Nitrotyrosine in Human Blood Serum

Abstract3‐Nitrotyrosine (NT) is generated by the action of peroxynitrite and other reactive nitrogen species (RNS), and as a consequence it is accumulated in inflammation‐associated conditions. This is particularly relevant in kidney disease, where NT concentration in blood is considerably high. Therefore, NT is a crucial biomarker of renal damage, although it has been underestimated in clinical diagnosis due to the lack of an appropriate sensing method. Herein we report the first fluorescent supramolecular sensor for such a relevant compound: Fluorescence by rotational restriction of tetraphenylethenes (TPE) in a covalent cage is selectively quenched in human blood serum by 3‐nitrotyrosine (NT) that binds to the cage with high affinity, allowing a limit of detection within the reported physiological concentrations of NT in chronic kidney disease.

A Fluorescent Cage for Supramolecular Sensing of 3-Nitrotyrosine in Human Blood Serum.

3‐Nitrotyrosine (NT) is generated by the action of peroxynitrite and other reactive nitrogen species (RNS), and as a consequence it is accumulated in inflammation‐associated conditions. This is particularly relevant in kidney disease, where NT concentration in blood is considerably high. Therefore, NT is a crucial biomarker of renal damage, although it has been underestimated in clinical diagnosis due to the lack of an appropriate sensing method. Herein we report the first fluorescent supramolecular sensor for such a relevant compound: Fluorescence by rotational restriction of tetraphenylethenes (TPE) in a covalent cage is selectively quenched in human blood serum by 3‐nitrotyrosine (NT) that binds to the cage with high affinity, allowing a limit of detection within the reported physiological concentrations of NT in chronic kidney disease.

Photophysical and Computational Insights into Ag(I) Complexation of Porphyrinic Covalent Cages Equipped with Triazoles-Incorporating Linkers.

The photophysical characterization of four supramolecular complexes based on covalent cages 2H-S-2H, 2H-L-2H, Zn-S-2H, and Zn-L-2H, consisting in either two free-base porphyrins or one Zn(II) porphyrin and one free-base porphyrin connected by four flexible linkers of different lengths incorporating triazole binding sites, and their Ag(I) complexation are reported. The complexation processes have been followed by means of absorption and emission spectroscopies, and a comprehensive computational study explains the behavior of the free-base porphyrin-containing cages. Absorption and emission features have been interpreted on the bases of conformational changes, metalation processes, and modification of energy transfer efficiencies occurring in the different cases. In all cages, except 2H-L-2H, the coordination of four Ag(I) ions to the lateral triazole groups of the linkers leads to the enlargement of their cavity. Only for 2H-L-2H is a different behavior observed, where the process of silver metalation of the porphyrins’ core prevails.

Self‐Assembly of a Purely Covalent Cage with Homochirality by Imine Formation in Water

AbstractSelf‐assembly of host molecules in aqueous media via metal–ligand coordination is well developed. However, the preparation of purely covalent counterparts in water has remained a formidable task. An anionic tetrahedron cage was successfully self‐assembled in a [4+4] manner by condensing a trisamine and a trisformyl in water. Even although each individual imine bond is rather labile and apt to hydrolyze in water, the tetrahedron is remarkably stable or inert due to multivalence. The tetrahedral cages, as well as its neutral counterparts dissolved in organic solvent, have homochirality, namely that their four propeller‐shaped trisformyl residues adopt the same rotational conformation. The cage is able to take advantage of hydrophobic effect to accommodate a variety of guest molecules in water. When a chiral guest was recognized, the formation of one enantiomer of the cage became more favored relative to the other. As a consequence, the cage could be produced in an enantioselective manner. The tetrahedron is able to maintain its chirality after removal of the chiral guest—probably on account of the cooperative occurrence of intramolecular forces that restrict the intramolecular flipping of phenyl units in the cage framework.

Self-Assembly of a Purely Covalent Cage with Homochirality by Imine Formation in Water.

Self-assembly of host molecules in aqueous media via metal-ligand coordination is well developed. However, the preparation of purely covalent counterparts in water has remained a formidable task. An anionic tetrahedron cage was successfully self-assembled in a [4+4] manner by condensing a trisamine and a trisformyl in water. Even although each individual imine bond is rather labile and apt to hydrolyze in water, the tetrahedron is remarkably stable or inert due to multivalence. The tetrahedral cages, as well as its neutral counterparts dissolved in organic solvent, have homochirality, namely that their four propeller-shaped trisformyl residues adopt the same rotational conformation. The cage is able to take advantage of hydrophobic effect to accommodate a variety of guest molecules in water. When a chiral guest was recognized, the formation of one enantiomer of the cage became more favored relative to the other. As a consequence, the cage could be produced in an enantioselective manner. The tetrahedron is able to maintain its chirality after removal of the chiral guest-probably on account of the cooperative occurrence of intramolecular forces that restrict the intramolecular flipping of phenyl units in the cage framework.

Rationalization of chirality transfer and fast conformational changes in a tris(2-pyridylmethyl)amine-based cage.

The key features that govern the chirality transfer in a structurally contracted covalent cage, consisting of a northern chiral cyclotriveratrylene (CTV) connected to a southern tris(2-pyridyl-methyl)amine (TPA) unit by three methyl bridges, are described. The preferential orientation of the propeller arrangement of TPA is dictated by its compact structure, with an arm of the TPA unit pointing inside the cage, together with the relative positioning of the three pyridines regarding the chiral CTV cap. The diastereomers with P/P (or M/M) configurations for the CTV and TPA units adopt eclipsed structures and were found to be more stable by 40 kJ mol−1 than the P/M (or M/P) diastereomer which displays a staggered arrangement. The existence of isomerization pathways between isomers of the cage with low energy barriers (38 kJ mol−1) accounts for the 1H-NMR signal, which is consistent with an averaged C3 structure.

Cage structure helps to improve the photoisomerization efficiency of azobenzene

Azobenzene (Azo) usually cannot achieve relatively high photoisomerization efficiency because of the overlap of the n-π* absorption bands between their isomers. In this work, three Azo units were integrated into a cage (AC) and adopt a nonplanar configuration. The distortion of the Azo units in AC results in the reduction of the n-π* band overlap, and consequently increases the full E → Z and Z → E photo-conversions to 87% and 85%, respectively, which are even higher than those of the planar parent azobenzene ADA (85% of E → Z and 76% of Z → E). Further theoretical calculations demonstrate that the n-π* excitation energy gap between the two AC isomers is larger than that of ADA, which further supports the reduction of the n-π* overlap. This AC shows the highest E ↔ Z photoisomerization efficiency among the symmetrical organic covalent cages yet reported.

Catenated Cages Mediated by Enthalpic Reaction Intermediates

Catenated cages are generally considered thermodynamically more stable than their constituent monomeric cages. However, the catenation mechanism is yet to be elucidated; it would require systematic...

Anisotropic low-energy vibrational modes as an effect of cage geometry in the binary barium silicon clathrate Ba24Si100

The low lattice thermal conductivity in inorganic clathrates has been shown recently to be related to the low-energy range of optical phonons dominated by motions of guest atoms trapped in a network of host covalent cages. A promising route to further reduce the heat conduction, and increase the material efficiency for thermoelectric heat waste conversion, is then to lower the energy of these guest-weighted optical phonons. In the present work, the effect of the host cage geometry is explored. The lattice dynamics of the binary type-IX clathrate, Ba24Si100, has been investigated experimentally by means of inelastic neutron scattering as a function of temperature between 5 K and 280 K, and computed by ab-initio density functional techniques. It is compared with the lattice dynamics of Ba8Si46, the simplest representative of the well-known type-I clathrate structure. The binary Ba8Si46 and Ba24Si100 materials have both a cubic unit cell made of different Si cages. The energies, the degree of anharmonicity as well as the anisotropy of the optical phonon modes weighted by Ba motions are found to depend strongly on 2 the size and shape of the cages. The lowest optical phonon energies in Ba24Si100 are found around 2.5-4 meV, while those in Ba8Si46 have higher energies around 7-9 meV. The low-lying optical phonons in Ba24Si100 are mainly weighted by the motion of Ba in the opened Si20 cage, which doesn't exist in Ba8Si46. Moreover, the Ba vibrations within the opened Si20 cages are found intrinsically anisotropic, strongly dispersionless in some directions and exhibit a significant anharmonicity, which is not observed for any optical phonon modes in Ba8Si46.

Expanded Carbaporphyrinoids.

This Review outlines the progress in the field of synthetic expanded carbaporphyrinoids. The evolution of this topic is demonstrated with expanded porphyrin-inspired systems with a variety of incorporated entities that introduce one or more carbon atoms into the cavity. The discussion starts with platyrins-the macrocycles that were identified as parent molecules of not only the expanded carbaporphyrinoids, but the carbaporphyrinoid class in general. After historic considerations, the plethora of expanded porphyrin-like macrocycles containing N-confused or neo-confused pyrrole motifs and different carbocyclic subunits are presented. Special emphasis is given to applications of expanded carbaporphyrinoids in different areas, including organometallic chemistry, switching systems, or aromaticity, concluding with the demonstration of a covalent cage based on an expanded carbaporphyrinoid.

Highly Selective Fluoride Recognition by a Small Tris-Urea Covalent Cage.

A highly selective recognition of fluoride was achieved through the design of a small hemicryptophane cage (3) presenting a southern tris-urea hosting moiety. The resulting host-guest complex has been characterized by electrospray ionization-high-resolution mass spectrometry, 1H and 19F NMR, and X-ray diffraction techniques. In particular, X-ray diffraction analysis of [3·F-] reveals that the encapsulation of one fluoride, within 3, occurs through NH···F- H-bonding with the six NH residues of the tris-urea ligand. An association constant of 1200 M-1 was extracted from 1H NMR titration experiments, indicating that efficient fluoride binding also occurs in solution. Finally, in sharp contrast with previously reported urea-based hemicryptophane hosts, the small preorganized cavity found in 3 allows for an exclusive selectivity for fluoride over other competing halides.