The approach to isospectral Hamiltonian flow introduced in part I is further developed to include integration of flows with singular spectral curves. The flow on finite dimensional Ad*-invariant Poisson submanifolds of the dual\((\widetilde{gl}(r)^ + )*\) of the positive part of the loop algebra\(\widetilde{gl}(r)\) is obtained through a generalization of the standard method of linearization on the Jacobi variety of the invariant spectral curveS. These curves are embedded in the total space of a line bundleT→P1(C), allowing an explicit analysis of singularities arising from the structure of the image of a moment map\(\tilde J_r :M_{N,r} \times M_{N,r} \to (\widetilde{gl}(r)^ + )*\) from the space of rank-r deformations of a fixedN×N matrixA. It is shown how the linear flow of line bundles\(E_t \to \tilde S\) over a suitably desingularized curve\(\tilde S\) may be used to determine both the flow of matricial polynomialsL(λ) and the Hamiltonian flow in the spaceMN,r×MN,r in terms of θ-functions. The resulting flows are proved to be completely integrable. The reductions to subalgebras developed in part I are shown to correspond to invariance of the spectral curves and line bundles\(E_t \to \tilde S\) under certain linear or anti-linear involutions. The integration of two examples from part I is given to illustrate the method: the Rosochatius system, and the CNLS (coupled non-linear Schrodinger) equation.
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