ABSTRACT Stilbenes are phytoalexins expressed by plants to avoid/resist certain biotic and abiotic stresses. This study was envisioned to determine the interrelationship between stilbenes producing ability of peanut genotypes and Aspergillus colonization level. Stilbenes were induced in peanut cotyledon in vitro by soaking in water, cutting them into thin slices, and subsequently challenging them with Aspergillus flavus. Fungal colonization was then measured in the cotyledon slices. The results showed major differences in fungal colonization levels between the control (seed without stilbene induction) and stilbenes-induced seeds. This finding was further validated using twenty peanut genotypes to ensure the relationship between stilbenes producing ability of the seed and fungal colonization level. The result showed that of the 20 genotypes tested, seeds of genotypes K1504, K1620 and K1632 showed minimal fungal colonization compared to control seed (without stilbenes induction), while genotypes DRT40, Kadiri-7, Narayani, DRT43 and Tirupati-3 showed no fungal colonization. The differences in stilbenes content and composition of cotyledon slices was determined by HPLC to assess genetic differences in their stilbenes producing ability. Comparative evaluation of these data showed that the genotypes that showed no fungal colonization expressed significantly higher amounts of stilbenes compared to genotypes which expressed relatively lower amounts of stilbenes. Overall, these data suggest that the genotypes expressing high amounts of stilbenes were able to mitigate fungal colonization while the genotypes expressing relatively lower amounts of stilbenes sustained fungal colonization, which indicates that this technique may be useful for screening breeding population to identify genotypes capable of avoiding Aspergillus colonization and aflatoxin contamination.