This article made a system dynamics flow diagram (SD flow diagram) to describe the green railway engineering (GRE) system, which provides a theoretical basis for discussing the source and change process of the green degree of railway engineering(GDR) and also provides a practical basis for accurate policy implementation and evaluation promotion of GRE management. Based on the definition of GDR and using “input-output” relationship to analyze system structure of GRE, set two green goals of environmental and resource cost decreases as the clue, deconstructed practice process based on the principle of construction to form GRE system dynamic flow diagram, which aims to reveal the key influencing factors and promotion path of GDR. The results of the research show that (1) the green schemes set the foundation of GDR, including 3 schemes of green planning, green design, green construction, and determine the expected control values (VE) of 4 status, namely ecological damage degree, environmental pollution degree, land occupation degree, and resources consume degree. (2) The deviation of expected control values (VE) and actual control values (VA) from 4 status is the premise of whether the GDR needs to be optimized or improved, and 2 practice achievements of green knowledge innovation and green culture creation provided different promotion paths for GDR. (3) According to the SD flow diagram constructed by research, the 3 schemes are influenced by regional ecological carrying capacity, social material resource reserve, green knowledge reserve, green talent reserve , reasonable goals setting, strengthening preliminary research, making full use of resources, deepening the connection of procedures, and so on are conducive to build a foundation for GDR. (4) The 4 status are directly controlled by seven rate variables, which promote the dynamic optimization of GDR by technology, equipment, institution management, and behavior management. The SD flow diagram of GRE provides 2 contributions. The first provides an analytical basis for the study of the promotion strategy of GDR, and the second provides a model basis for further quantitative study of GDR.