Cosmopolitan Species Research Articles

An INDEL genomic approach to explore population diversity of phytoplankton.

Although metabarcoding and metagenomic approaches have generated large datasets on worldwide phytoplankton species diversity, the intraspecific genetic diversity underlying the genetic adaptation of marine phytoplankton to specific environmental niches remains largely unexplored. This is mainly due to the lack of biological resources and tools for monitoring the dynamics of this diversity in space and time. To gain insight into population diversity, a novel method based on INDEL markers was developed on Bathycoccus prasinos (Mamiellophyceae), an abundant and cosmopolitan species with strong seasonal patterns. Long read sequencing was first used to characterize structural variants among the genomes of six B. prasinos strains sampled from geographically distinct regions in the world ocean. Markers derived from identified insertions/deletions were validated by PCR then used to genotype 55 B. prasinos strains isolated during the winter bloom 2018-2019 in the bay of Banyuls-sur-Mer (Mediterranean Sea, France). This led to their classification into eight multi-loci genotypes and the sequencing of strains representative of local diversity, further improving the available genetic diversity of B. prasinos. Finally, selected markers were directly tracked on environmental DNA sampled during 3 successive blooms from 2018 to 2021, showcasing a fast and cost-effective approach to follow local population dynamics. This method, which involves (i) pre-identifying the genetic diversity of B. prasinos in environmental samples by PCR, (ii) isolating cells from selected environmental samples and (iii) identifying genotypes representative of B. prasinos diversity for sequencing, can be used to comprehensively describe the diversity and population dynamics not only in B. prasinos but also potentially in other generalist phytoplankton species.

Accumulation of Spherical Microplastics in Earthworms Tissues-Mapping Using Raman Microscopy

The presence of microplastics in the environment is now becoming a challenge for many scientific disciplines. Molecular diversity and spatial migration make it difficult to find plastic-free areas. Their negative, often toxic, effects affect plants and animals to varying degrees, causing many biochemical disorders, species degradation, and population changes. This study aimed to determine the possibility of accumulation of spherical low-density polyethylene particles of 38–63 µm (38–45 µm 1.00 g/cm3, and 53–63 µm 1.00 g/cm3) with fluorescent properties in muscle tissues of the cosmopolitan earthworm species Lumbricus terrestris, exposed to plastic contained in the soil at a concentration of 0.1% dry weight for 3 months. Analysis of the tissues by Raman microscopy included the estimation of mapping area size, sampling density, accumulation time, spectra, laser line, and laser power to detect plastic in the samples effectively. Our results demonstrate the ability of low-density polyethylene microparticles to accumulate in earthworm tissues and are presented graphically for the mapping area and images with plastic detection sites marked. In addition, this article highlights the potential of using Raman microscopy for research in the field of tissue analysis.

The effect of environmental and anthropogenic factors on the microbiome of the sponge, Halichondria panicea, at three coastal sites with different bathing water quality in North east England

The breadcrumb sponge, Halichondria panicea, is a cosmopolitan marine species. Life functions, such as feeding, metabolism and defence, are maintained through microbial symbiosis. As such, perturbations to the symbiotic balance can be expected to affect the health and survival of the sponge. Although generally tolerant of environmental variables, such as temperature, pH and salinity, responses to anthropogenic factors are poorly understood. In this study, the microbial community of the H. panicea was examined over the course of 1 year. Sponge and seawater samples were collected in January, April, July and October 2022, from three locations with different levels of bathing water quality, according to the UK’s Environment Agency. Samples were sequenced using the 16S ribosomal RNA (rRNA) gene, and amplicon sequence variants (ASVs) were inferred from the generated data. Differences in bacterial diversity and abundance among sponge samples from the three locations were examined. A correlation test was used to study the effect of physical and chemical environmental factors along with faecal indicator bacteria on the abundance of the top ten most abundant bacterial phyla. Environmental factors (determined from seawater physicochemical properties) and pollution (determined from trace metals, nutrients and faecal bacteria levels) were found to play an important role in shaping the microbial community of this sponge. The sponge microbiome showed a noticeable seasonal shift, with some species flourishing in January and others emerging in April, notably the faecal and coliform bacteria. Sponge microbiomes from sites with poor-quality bathing water were generally less diverse and had lower microbial abundance, resulting in a greater range of intra-species dispersion than those of sponges living in excellent–good quality waters.

MaxEnt modeling of Klebsiella pneumoniae: predicting future distribution and evaluating the risk for public health

Klebsiella pneumoniae is a Gram-negative bacterium known for causing infections such as pneumonia, urinary tract infections, and bloodstream infections in humans. Its increasing drug resistance poses a significant threat. Understanding the effects of climate change on this bacterium is crucial to managing its impacts effectively. In this study, we employed MaxEnt modeling to explore the current and future distribution of K. pneumoniae under different climate change scenarios for 2050 and 2070. Our models utilized 280 valid occurrence points and 19 bioclimatic variables, with Mean Annual Temperature and Mean Annual Precipitation being the most influential variables. The models demonstrated high accuracy, with an AUC of 0.889. Our findings revealed that K. pneumoniae has a cosmopolitan distribution, with the highest suitability observed in Southeastern Asia, Central Africa, and Southern Europe. Future predictions indicated an apparent expansion of its range across almost all continents, particularly in the RCP 8.5 2070 scenario. Results have crucial implications for epidemiology, as they enable the identification of current and potential future disease hotspots and geographical patterns. This knowledge can inform the development of effective infection control strategies. Furthermore, it provides valuable insights for decision-makers and policymakers in allocating resources efficiently for medical control and prevention strategies.

Chromosome-level genome assembly of the cosmopolitan diatom Skeletonema costatum provides insights into ecological adaptation

The cosmopolitan diatom species Skeletonema costatum is an ecologically important dominant phytoplankton frequently found in the coastal estuarine and marine waters, and often causes harmful algae blooms. Despite of its critical ecological importance, chromosome-level genome assemble is still unavailable, hindering in-depth understanding of their evolution and environmental adaption. Here, we report a chromosome-level genome assembly for the marine diatom species S. costatum. The assembled genome size was 136.49 Mb, with a contig N50 of 302 Kb and 95.30 % of the reads anchored into 23 pseudo-chromosomes with a scaffold N50 of 6.19 Mb. A total of 28,321 protein-coding genes were predicted, with 86.03 % being functional annotated. The BUSCO assessment of genome assembly and genome annotation were both above 90 %. Phylogenetic analysis showed the expected topology, with S. costatum and its closely related species S. marinoi diverged from their common ancestor around 22.6 million years ago. The genome size of S. costatum is comparatively larger than those of its closely related diatoms, due mostly to its higher transposable element contents and larger number of proteincoding genes. Collinearity analysis revealed strong collinearity between S. costatum and other Skeletonema with most chromosomes showing clear one-to-one correspondences. A larger family of nine copies of the cryptochrome genes that function as blue light photoreceptors were identified in S. costatum, which could contribute its ecological success. The availability of the high-quality chromosome-level genome assembly for S. costatum represents a valuable resource that may facilitate comparative genomics for revealing important ecological clues and gene families, and future genetics and environmental studies among Skeletonema species.

Comparing traditional and automated conservation assessments for Himalayan species of Buddleja

Abstract To compare the benefits and drawbacks of traditional and automated conservation assessments, we used a field-based study and automated conservation assessments using GeoCAT, red and ConR to assess four species of Buddleja (Scrophulariaceae), a cosmopolitan genus of flowering plants. Buddleja colvilei, Buddleja sessilifolia, Buddleja delavayi and Buddleja yunnanensis are endemic to the Himalayan region. They have not yet been assessed for the IUCN Red List of Threatened Species but are facing elevated risks of extinction because of various anthropogenic and environmental pressures. Buddleja sessilifolia and B. delavayi are listed as Plant Species with Extremely Small Populations in Yunnan, China, where they are known to be threatened. Although automated assessments evaluated B. delavayi and B. yunnanensis as Endangered and B. sessilifolia and B. colvilei as Vulnerable, our field studies indicated a different categorization for three of the species: B. delavayi and B. yunnanensis as Critically Endangered and B. sessilifolia as Endangered. Our findings indicate that the accuracy and reliability of assessment methods can differ and that field surveys remain important for conservation assessments. We recommend an integrated approach addressing these limitations, to safeguard the future of other species endemic to the Himalayan region.

Additions to Lentitheciaceae (Pleosporales, Dothideomycetes): Pseudosetoseptoria jiangxiensis sp. nov. from decaying culms of bamboo in China

In terms of morphology, ecology, and phylogeny, Lentitheciaceae species exhibit an enormous diversity. They have a cosmopolitan distribution worldwide, and lead diverse lifestyles. A novel species in Lentitheciaceae, Pseudosetoseptoria jiangxiensis occurring on decaying culms of bamboo in Jiangxi province, China is described and illustrated. Morphologically, Pseudosetoseptoria jiangxiensis has dark brown to black, semi-immersed, carbonaceous, pycnidial conidiomata and hyaline, obovoid, elliptic, or nearly spherical, aseptate conidia with minute guttules. Maximum likelihood and Bayesian inference analyses of combined ITS, LSU, SSU and tef1-α sequence data were used to clarify the phylogenetic affinities of the species.

Integrative taxonomy of Tethya: description of four new species based on morphology, phylogeny and microbiome diversity

The genus Tethya, one of the most iconic groups in the phylum Porifera. includes nearly 100 valid species. Tethya shows a nearly cosmopolitan distribution, and thus this clade could help elucidate global mechanisms of speciation in sponges. Contrasting with many other marine organisms, Tethya peaks in diversity in the temperate region, with only ∼30% of diversity occurring in the tropics. This pattern may however be related to a lack of studies in the tropics, masked by dubious taxonomic identifications. To address this question, we studied new collections from the Western Atlantic (Caribbean and Brazil) and the Northeastern Atlantic, as well as museum material from the Indian Ocean. Combining morphological investigation with molecular phylogenetics and the study of the sponge’s microbial communities, we conclude that four constitute new species that we describe here: Tethya martini Riesgo, Giribet, & Santodomingo, sp. nov.; Tethya simoni Santodomingo, Zea, & Riesgo, sp. nov.; Tethya erici Díez-Vives, Santodomingo, Moles, & Riesgo, sp. nov.; Tethya orioni Kenny, Santodomingo & Riesgo, sp. nov. Some species thought to be widespread (e.g., T. aurantium and T. seychellensis), each represent multiple species with unique geographic distributions. A phylogenetic analysis of Tethya (based on COI and 28S rRNA sequence data) recovered five main clades, which were also characterized by distinct prokaryotic communities. This suggests that microbiomes could be used as a guide for taxonomic identification in Tethya. We finally explored the existence of a phylosymbiotic pattern in sponges at different levels of prokaryotic taxonomic resolution (i.e., at phylum, class, and genus-level analysis of prokaryotes). Remarkably, our analysis revealed high levels of coevolution of Tethya and their associated microbial communities, even when microbiomes were analysed at the genus level. Our findings support the use of an integrative approach to better understand the evolutionary history of sponges. http://zoobank.org/urn:lsid:zoobank.org:pub:54F80E5E-99A4-43CE-BA3A-BCD01E715595

Two new species of Anax Leach, 1815 from the Solomon Islands and Tonga (Odonata: Aeshnidae)

Species of the cosmopolitan genus Anax Leach, 1815 are among the largest dragonflies and the most powerful flyers. Within the genus the proportion between body length and wing and the body shape of both sexes are of great taxonomic importance. Here we describe two new Anax species: Anax insulanus sp. nov., from the Solomon Islands and A. tonga sp. nov., from Tonga. To distinguish both species from a very similar sympatric congener we compare the S3 Index which is defined as the relative length and width at its narrowest point of abdominal segment 3. Anax fumosus celebense Lieftinck, 1942 is raised to species level. Diagnostic characters of male and female (if available) are illustrated. A key is presented for the identification of the males of the 14 species of Anax known to occur in the Australian, the Oceanian and the south of the Indomalayan Biogeographical Realms.

Landscape Heterogeneity Drives Genetic Diversity in the Highly Dispersive Moss Funaria hygrometrica Hedw.

Funaria hygrometrica, a cosmopolitan moss species known for its remarkable dispersal capacity, was selected as the focal organism to investigate the relationship between landscape features and genetic diversity. Our study encompassed samples collected from two distinct regions: the Spanish Sierra Nevada Mountains (SN), characterized by a diverse landscape with an altitudinal difference of nearly 3500 m within a short distance, and the Murcia Region (MU) in Southeast Spain, characterized by a uniform landscape akin to the lowlands of Sierra Nevada. Genotyping analysis targeted three genetic regions: the nuclear ribosomal internal transcribed spacer (nrITS), the chloroplast rps3-rpl16 region, and the mitochondrial rpl5-rpl16 spacer. Through this analysis, we aimed to assess genetic variability and population structure across these environmentally contrasting regions. The Sierra Nevada populations exhibited significantly higher haplotype diversity (Hd = 0.78 in the highlands and 0.67 overall) and nucleotide diversity (π% = 0.51 for ITS1) compared to the Murcia populations (Hd = 0.35, π% = 0.14). Further investigation unveiled that samples from the lowlands of Sierra Nevada showed a closer genetic affinity to Murcia than to the highlands of Sierra Nevada. Furthermore, the genetic differentiation between highland and lowland populations was significant (ΦST = 0.55), with partial Mantel tests and ResistanceGA analysis revealing a strong correlation between ITS1-based genetic diversity and landscape features, including altitude and bioclimatic variables. Our study elucidated potential explanations for the observed genetic structuring within F. hygrometrica samples' populations. These included factors such as a high selfing rate within restricted habitats, a limited average dispersal distance of spores, hybrid depression affecting partially incompatible genetic lineages, and recent migration facilitated via human activities into formerly unoccupied areas of the dry zones of Southeast Spain.

Testate amoebae from the wetlands of the Phobjikha Valley of Bhutan, the Eastern Himalaya

The Kingdom of Bhutan in the Eastern Himalayas harbors a rich biodiversity. However, its detailed documentation still needs to be created, including not only macroorganisms but also protists. In the present study, as many as 105 taxa of testate amoebae were identified and directly counted in soil suspensions, samples from the wetlands of the Gangtey-Phobji Valley (generally Phobjikha), Wangdphodrang district. The most dominant were cosmopolitan species, e.g., Euglypha rotunda, Trinema lineare, T. complanatum, T. enchelys, Phryganella acropodia, and Plagiopyxis declivis. However, some taxa such as Centropyxis deflandriana, C. stenodeflandriana, Hoogenraadia cf. humicola, Pareuglypha reticulata, and Sphenoderia chardezi have a geographically restricted distribution and/or are considered rare. Some specimens could not be assigned to already described species (Centropyxis dentata sp. nov. and Difflugia fusiforma sp. nov.) or were highly similar to known species but differed in size or other taxonomically important characteristics (e.g., Hoogenraadia cf. humicola and Planhoogenraadia sp.). To our knowledge, this study is the first to present a comprehensive list of testate amoebae from Bhutan, including some new and rare species. The discovery of a remarkable diversity of testate amoebae taxa from only a few soil samples suggests that this remote and largely unexplored region likely harbors many more intriguing species.

Review of Asaphes Walker, 1834 (Hymenoptera, Chalcidoidea, Asaphesinae) from Xinjiang, China.

Four species of the cosmopolitan genus Asaphes Walker, 1834 (Hymenoptera: Chalcidoidea: Asaphesinae, family incerta sedis) are recorded from Xinjiang Uyghur Autonomous Region, China, bringing the number of known species in China to eight. In addition to Asaphessuspensus (Nees ab Esenbeck), 1834 and A.vulgaris Walker, 1834, A.fuyunis Li & Zhang, sp. nov. is newly described based on females and A.californicus Girault, 1917, previously known only from North and South America, is newly recorded from China. These four species are differentiated using an integrative taxonomic approach that includes COI barcode data and morphometrics, and are illustrated using macrophotography. Additionally, the 13 described world species of Asaphes are tabulated and females of the eight recognized Chinese species are keyed.

Morphological and molecular characterization of two potentially toxigenic species of the genus Pseudo-nitzschia (Bacillariophyceae) in Luzon Island, Philippines

Harmful algal blooms are a major concern for the environment and industries like fisheries, healthcare, and tourism in coastal countries such as the Philippines. Blooms of diatoms (Bacillariophyceae) seldom cause harm, but half of the species in the cosmopolitan genus Pseudo-nitzschia produce the neurotoxin domoic acid. Only two published Pseudo-nitzschia surveys in the Philippines carried out morphology-based species identification. Molecular taxonomy has revealed a high level of cryptic diversity corresponding to minute morphological differences. This study sought to explore the diversity of and characterize the genus Pseudo-nitzschia in mariculture zones around Luzon Island using morphological and molecular information. Ten culture strains of Pseudo-nitzschia isolated from shellfish farms were used for morphological and molecular species identification. The secondary structure of the internal transcribed spacer 2 region revealed five strains from Pagbilao Bay to be most similar to P. brasiliana, the first record of this species in Luzon. Meanwhile, four Bacoor isolates and one from Pagbilao clustered within a monophyletic clade representing P. pungens, previously found in Manila Bay. Three single nucleotide polymorphisms and one hemi-compensatory base change were found among the P. pungens strains. Morphological characters, specifically cell shape, apex shape, and poroid density confirmed both species identities. Based on band striae, all P. pungens strains were of the nominal variety, P. pungens var. pungens. This study is among the first culture-based taxonomic studies of diatoms in the Philippines, in this case confirming the presence of harmful microalgae in the coastal ecosystems of the country.

Late Jurassic (Kimmeridgian) bivalves from northwestern Algeria (Daïa and Nador mountains): Systematics and palaeobiogeography

The bivalve fauna of the Upper Jurassic (Kimmeridgian) successions belonging to the Daïa and Nador mountains (NW Algeria) is taxonomically described and figured. For the first time, sixteen bivalve taxa were identified, partly in open nomenclature because of their poor state of preservation. Most taxa are represented by internal casts. The fauna was collected from two different formations of the same age: the Dolomies de Tlemcen Formation in the Daïa Mountains and the Faïdja Formation in the Nador Mountains. The lithologic characteristics of these formations, together with their fossil content and taphonomic features, confirm that these localities are characterized by marine conditions. The north-western Algerian bivalve assemblage holds the largest portion of cosmopolitan species.

Endemic, cosmopolitan, and generalist taxa and their habitat affinities within a coastal marine microbiome

The relative prevalence of endemic and cosmopolitan biogeographic ranges in marine microbes, and the factors that shape these patterns, are not well known. Using prokaryotic and eukaryotic amplicon sequence data spanning 445 near-surface samples in the Southern California Current region from 2014 to 2020, we quantified the proportion of taxa exhibiting endemic, cosmopolitan, and generalist distributions in this region. Using in-situ data on temperature, salinity, and nitrogen, we categorized oceanic habitats that were internally consistent but whose location varied over time. In this context, we defined cosmopolitan taxa as those that appeared in all regional habitats and endemics as taxa that only appeared in one habitat. Generalists were defined as taxa occupying more than one but not all habitats. We also quantified each taxon’s habitat affinity, defined as habitats where taxa were significantly more abundant than expected. Approximately 20% of taxa exhibited endemic ranges, while around 30% exhibited cosmopolitan ranges. Most microbial taxa (50.3%) were generalists. Many of these taxa had no habitat affinity (> 70%) and were relatively rare. Our results for this region show that, like terrestrial systems and for metazoans, cosmopolitan and endemic biogeographies are common, but with the addition of a large number of taxa that are rare and randomly distributed.

“Picking up signals” in male genital morphospace and integrating phylogenomics to delimit Neotropical Nylanderia Emery species (Hymenoptera: Formicidae)

Abstract Genital morphology, a cornerstone in taxonomy that predates Linnaeus’s Systema Naturae, is vital for species delimitation. However, the widely accepted paradigm that genitalia are taxonomically informative lacks robust testing between closely related species, and supporting evidence is often limited to taxonomic literature in which genitalia are assumed a priori to be species-specific. The cosmopolitan ant genus Nylanderia Emery includes 123 described species, with most in the Neotropics still undescribed. Workers are often morphologically cryptic, and males are rare in collections but required for morphological delimitation. Using Ultraconserved Elements (UCEs) from 236 samples, including 53 Neotropical Nylanderia species, we reconstructed a phylogenetic framework to compare the genitalia (gonopods) of males collected alongside workers. We used geometric morphometrics on images of slide-mounted genitalia from 16 species and nano-CT scans of Nylanderia fulva (Mayr) and Nylanderia pubens (Forel) genital capsules and interpreted results considering phylogeny under maximum likelihood and the multispecies coalescent. We found strong morphological and molecular support for 2 distantly related American clades, identifiable by gonopod shape, with significant differences observed among most species. Three previously reported COI clades of N. fulva were not supported as monophyletic, nor were their gonopods significantly different. However, N. pubens was supported as distinct by all phylogenetic and 3DGM results. Our findings emphasize the importance of male genitalia for delimiting species boundaries and revising Neotropical Nylanderia. Given their importance, particularly in morphologically cryptic taxa, we recommend a greater focus on linking male and worker phenotypes, which can be facilitated through comprehensive nest series collection.

Comparative Plastomics of Plantains (Plantago, Plantaginaceae) as a Tool for the Development of Species-Specific DNA Barcodes.

Plantago (plantains, Plantaginaceae) is a cosmopolitan genus including over 250 species used as functional foods, forage, and traditional medicine. Among them, Plantago lanceolata is commonly used as an ingredient of herbal products, but the close similarity to other Plantago species can cause misidentifications with potentially serious consequences for product safety/quality. To test the possibility of developing species-specific barcoding markers, we de novo assembled plastome sequences of individuals of Plantago argentea, Plantago atrata, P. lanceolata, and Plantago maritima. These genomes were characterized in comparison with both previously sequenced conspecific accessions and other publicly available plastomes, thus providing an assessment of both intraspecific and interspecific genetic variation in Plantago plastomes. Additionally, molecular evolutionary analyses indicated that eleven protein-coding genes involved in different plastid functions in Plantago plastomes underwent positive selection, suggesting they might have contributed to enhancing species' adaptation during the evolutionary history of Plantago. While the most variable mutational hotspots in Plantago plastomes were not suitable for the development of species-specific molecular markers, species-specific polymorphisms could discriminate P. lanceolata from its closest relatives. Taken together, these results highlight the potential of plastome sequencing for the development of molecular markers to improve the identification of species with relevance in herbal products.

Molecular diversity and seasonal dynamics of Ostreococcus (Mamiellophyceae, Chlorophyta) in typical mariculture bays based on metabarcoding analysis

Ostreococcus (Mamiellophyceae, Chlorophyta) is a cosmopolitan genus of marine pico-phytoplankton and the smallest free-living photosynthetic eukaryotes with cell size of 1–2 μm. To understand the diversity and spatio-temporal distribution of Ostreococcus in the Rongcheng coastal regions in northern China, metabarcoding analysis based on the 18S rDNA V4 molecular marker was applied to study the molecular diversity and seasonal dynamics of Ostreococcus in three typical mariculture bays (Rongcheng Bay, Lidao Bay and Sanggou Bay). A total of 103 amplicon sequence variants (ASVs) annotated as Ostreococcus were detected in these three typical mariculture bays throughout the year. The top five ASVs in terms of abundance were ASV4, ASV9, ASV14, ASV28 and ASV109, totally occupying 99.1% of Ostreococcus reads. Phylogenetic analysis showed that these five dominant ASVs represented two Ostreococcus ecotypes (OI and OII) and were grouped into four Ostreococcus clades including Ostreococcus lucimarinus (ASV9) and Ostreococcus tauri (ASV28 and ASV109) in OI, and Ostreococcus sp. RC1 (ASV4) and Ostreococcus sp. RC2 (ASV14) in OII, which provided direct evidence to support the co-existence of two ecotypes in the Rongcheng coastal regions. Five dominant ASVs in OI and OII exhibited two distinct seasonal distribution patterns. Three dominant ASVs (ASV9, ASV28 and ASV109) in OI could be detected in all four seasons of the year, exhibiting native distribution properties, while two ASVs (ASV4 and ASV14) in OII decreased sharply in winter and could not be detected in spring, exhibiting characteristics of alien inputs. The composition, succession and association of Ostreococcus community were mainly driven by water temperature in these mariculture bays. This study helps us systematically understand the molecular diversity and distribution patterns of Ostreococcus in typical mariculture bays in northern China, laying the foundation for understanding and revealing the ecological functions of pico-phytoplankton.

Carboniferous conulariids (Cnidaria: Scyphozoa) from Ukraine

An assemblage of Carboniferous conulariids (Cnidaria) from Ukraine, consisting of Paraconularia inaequicostata (de Koninck, 1883) s.l., P. irregularis (de Koninck, 1843), P. kohli Brew & Beus, 1976, P. quadrisulcata (Sowerby, 1821), P. lata n. sp., P. cf. crustula (White, 1880), ?P. cf. subulata (Hall, 1858), ?Holoconularia rossica Van Iten et al., 2023, and ?H. poletaevi n. sp., is described. Conulariids have been collected from 15 localities, the detailed palaeontological and stratigraphic characteristics of which are summarized here. Nearly all the conulariids were found in the Donets Basin in the Serpukhovian–early Bashkirian and middle–late Moscovian intervals, which are separated from each other by an interval apparently lacking conulariids. Two new species, Paraconularia lata n. sp. and ?Holoconularia poletaevi n. sp., occur in Moscovian strata. The results of the present study confirm the ability of certain conulariids to withstand major environmental perturbations, as there are no significant changes in species composition across the mid-Carboniferous (Mississippian/Pennsylvanian) boundary. Three species, very similar to species in North America, commonly occur in Carboniferous deposits of Ukraine, namely ?Paraconularia subulata (middle Visean), P. kohli, and P. cf. crustula (Moscovian). The discovery of these three species in the Donets Basin of Ukraine underscores the cosmopolitan distribution of at least some conulariids during Carboniferous times.

Physiological and transcriptomic analyses to determine the responses of the harmful algae Akashiwo sanguinea to phosphorus utilization

Phosphorus (P) is an essential nutrient driving algal growth in aquatic ecosystems. Dissolved inorganic and organic P (DIP and DOP) are the main components in the marine P pools and are closely related to harmful algal blooms. The dinoflagellate Akashiwo sanguinea is a cosmopolitan species which frequently causes dense blooms in estuaries and coasts worldwide, while the availability of P to A. sanguinea still remain unclear. Herein, the physiological and transcriptomic responses of A. sanguinea grown under P-deficient, DIP-replete and DOP-replete conditions were compared. P-deficient adversely suppressed the growth and photosynthesis of A. sanguinea, while genes associated with P transport, DOP utilization, sulfolipid synthesis, and energy production, were markedly elevated. Three forms of DOP, namely, glucose-6-phosphate (G-6-P), adenosine 5-triphosphate (ATP), and β-Glycerol phosphate (SG-P), supported A. sanguinea growth as efficiently as DIP (NaH2PO4), and no significant difference was observed in biochemical compositions and photosynthesis of A. sanguinea between the DIP and DOP treatments. While the genes related to P transporter were markedly suppressed in DOP groups compared with the DIP group. Our results indicated that A. sanguinea is a good growth strategist under P-deficient/replete conditions, and this species had evolved a comprehensive strategy to cope with P deficiency, which might be a crucial factor driving bloom formation in a low inorganic P environment.