To determine whether decision trees are useful for predicting organisms that cause community-acquired pneumonia (CAP). We developed a decision tree for predicting the organisms that cause CAP based on previously reported characteristic computed tomography findings. Sixteen readers (two student doctors, six residents, and eight radiologists) separately diagnosed 68 randomly selected cases of CAP using chest computed tomography. The first, second, and third most likely causative organisms were estimated for each case, and the percentages of correct answers were evaluated for consistency with the isolated organisms. The same 68 cases were then read again using the decision tree, with the first three most likely organisms again being estimated, and the percentage of agreement was evaluated as the percentage of correct responses after using the decision tree. For student doctors, residents, and radiologists, the percentage of correct responses increased significantly (p < 0.0001) when the decision tree was used to predict the first, second, and third most probable causative organism. The radiologists all obtained an accuracy rate of 80% or higher when estimating up to three candidate organisms using the decision tree. The organism for which the decision tree was most useful was Mycoplasma pneumoniae, followed by Haemophilus influenzae and Chlamydophila pneumoniae (p < 0.001). Use of the decision tree made it possible to estimate the organisms responsible for CAP with a high correct response rate.