Coral reefs are among the world’s most diversified marine ecosystems. While their rich biodiversity is essential to many social and economic activities, they face unprecedented cumulative impacts from climate change and anthropogenic development. Aligning governance structures with ecological processes has become key to sustaining ecosystem services. Nevertheless, a major obstacle to informing decision-making is the lack of empirical data on interacting ecological and social processes. Therefore, novel methods for facilitating the assessment of coral reef social-ecological systems are necessary.