Coral Acropora Research Articles

Dangerous demographics in post-bleach corals reveal boom-bust versus protracted declines

Thermal-stress events have changed the structure, biodiversity, and functioning of coral reefs. But how these disturbances affect the dynamics of individual coral colonies remains unclear. By tracking the fate of 1069 individual Acropora and massive Porites coral colonies for up to 5 years, spanning three bleaching events, we reveal striking genus-level differences in their demographic response to bleaching (mortality, growth, and recruitment). Although Acropora colonies were locally extirpated, substantial local recruitment and fast growth revealed a marked capacity for apparent recovery. By contrast, almost all massive Porites colonies survived and the majority grew in area; yet no new colonies were detected over the 5 years. Our results highlight contrasting dynamics of boom-and-bust vs. protracted declines in two major coral groups. These dangerous demographics emphasise the need for caution when documenting the susceptibility and perceived resistance or recovery of corals to disturbances.

Solving the Coral Species Delimitation Conundrum.

Distinguishing coral species is not only crucial for physiological, ecological, and evolutionary studies but also to enable effective management of threatened reef ecosystems. However, traditional hypotheses that delineate coral species based on morphological traits from the coral skeleton are frequently at odds with tree-based molecular approaches. Additionally, a dearth of species-level molecular markers has made species delimitation particularly challenging in species-rich coral genera, leading to the widespread assumption that interspecific hybridization might be responsible for this apparent conundrum. Here, we used three lines of evidence-morphology, breeding trials, and molecular approaches-to identify species boundaries in a group of ecologically important tabular Acropora corals. In contrast to previous studies, our morphological analysis yielded groups that were congruent with experimental crosses as well as with coalescent-based and allele sharing-based multilocus approaches to species delimitation. Our results suggest that species of the genus Acropora are reproductively isolated and independently evolving units that can be distinguished morphologically. These findings not only pave the way for a taxonomic revision of coral species but also outline an approach that can provide a solid basis to address species delimitation and provide conservation support to a wide variety of keystone organisms. [Acropora; coral reefs; hybridization; reproductive isolation; taxonomy.].

Physiological Response of Shallow-Water Hard Coral Acropora digitifera to Heat Stress via Fatty Acid Composition

Heat stress disturbs the mutualistic relationship between the hard corals and the symbiotic algae, which cause coral bleaching. A wide array of biochemical parameters is used to demonstrate the phenomenon. This study exposed a shallow-water hard coral, Acropora digitifera, to a series of elevated temperatures over time while the interaction between Symbiodiniaceae (SD) density, antioxidants activities, fatty acid (FA) composition, and putative FA health indicators was evaluated. Heat stress caused a substantial loss in SD densities, consequently regulated the antioxidant activities and caused significant changes in FA composition. There was a lack of evidence showing A. digitifera experienced oxidative stress; nonetheless, a significant decrease of monounsaturated fatty acid as (MUFA) and polyunsaturated fatty acid (PUFA) during the thermally induced experiment demonstrated that corals utilize their unsaturated FA as a final barrier or as a repair system against oxidative damage once the antioxidant enzyme cannot cope with stress condition. The lower ratio of putative FA health indicators [i.e., n-3 LC:n-6 LC, eicosapentaenoic acid (EPA):arachidonic acid (ARA), and docosahexaenoic acid (DHA):ARA] characterized an unhealthy coral. The loss of SD density was significantly correlated with certain PUFA markers [i.e., linolenic acid (18:3n6), 20:5n3, and 22:6n3] and putative FA health indicator (i.e., n-3 LC:n-6 LC, EPA:ARA, and DHA:ARA). These notably imply that the FA linked with the symbiont can be a potential health indicator for assessing the effect of the environmental stressor on coral. This study also revealed the regulation of FAs during stress conditions, especially when heterotrophic feeding is limited. Future studies on FA profiles toward antagonistic or synergistic effects will offer a better understanding of the nature of this relationship under a harsh climate.

Should Hybrids Be Used in Coral Nurseries? A Case Study Comparing Caribbean Acropora spp. and Their Hybrid in the Bahamas

For decades, coral reef ecosystems have been in decline due to environmental stressors such as rising sea temperatures, increased disease prevalence, and other local anthropogenic sources. Considering this decline, coral restoration efforts in the Caribbean have been implemented to promote reef recovery with a focus on the coral genus Acropora. Current methods target the threatened species Acropora cervicornis and A. palmata, but little is known about the restoration potential of their hybrid taxon, A. prolifera. Using interspecific hybrids with higher fitness than one or both parental species has gained traction as a novel restoration technique. For this study, three in situ coral tree nurseries were established around Great Stirrup Cay, The Bahamas, to compare the growth and survival among acroporid taxa. Three 150 mm fragments from six putative genotypes of each acroporid taxa were collected from reefs around New Providence, The Bahamas, and transported to Great Stirrup Cay in June 2018. One fragment from each genotype was transported to each nursery site, cut into three sections (apical, middle, and basal), and suspended from PVC coral trees. Fragment survival was collected monthly for 13 months, and Total Linear Extension (TLE) values were calculated for each fragment monthly for 12 months. Nursery site significantly affected fragment survival, while taxon and fragment section did not. Total fragment mortality was 29.3% in the first month but ranged from 0 to 5% for the rest of the study period until July 2019 (32.7% of remaining fragments died primarily at N1). Overall, A. prolifera growth was significantly greater than the parental species. Taxon, nursery site, and fragment section were identified as important factors affecting TLE. Apical A. prolifera fragment sections at site N3 had the greatest average linear growth at 12 months and had the greatest average growth rate per month. This study highlights the rapid growth rate of hybrid corals and suggests that fragment sections have equivalent survival and growth. Consequently, these results suggest that restoration managers may capitalize on fast growing hybrids for outplanting to degraded reefs and to increase the scale of nursery projects.

Widespread variation in heat tolerance and symbiont load are associated with growth tradeoffs in the coral Acropora hyacinthus in Palau.

Climate change is dramatically changing ecosystem composition and productivity, leading scientists to consider the best approaches to map natural resistance and foster ecosystem resilience in the face of these changes. Here, we present results from a large-scale experimental assessment of coral bleaching resistance, a critical trait for coral population persistence as oceans warm, in 221 colonies of the coral Acropora hyacinthus across 37 reefs in Palau. We find that bleaching-resistant individuals inhabit most reefs but are found more often in warmer microhabitats. Our survey also found wide variation in symbiont concentration among colonies, and that colonies with lower symbiont load tended to be more bleaching-resistant. By contrast, our data show that low symbiont load comes at the cost of lower growth rate, a tradeoff that may operate widely among corals across environments. Corals with high bleaching resistance have been suggested as a source for habitat restoration or selective breeding in order to increase coral reef resilience to climate change. Our maps show where these resistant corals can be found, but the existence of tradeoffs with heat resistance may suggest caution in unilateral use of this one trait in restoration.

Uneven declines between corals and cryptobenthic fish symbionts from multiple disturbances

With the onset and increasing frequency of multiple disturbances, the recovery potential of critical ecosystem-building species and their mutual symbionts is threatened. Similar effects to both hosts and their symbionts following disturbances have been assumed. However, we report unequal declines between hosts and symbionts throughout multiple climate-driven disturbances in reef-building Acropora corals and cryptobenthic coral-dwelling Gobiodon gobies. Communities were surveyed before and after consecutive cyclones (2014, 2015) and heatwaves (2016, 2017). After cyclones, coral diameter and goby group size (i.e., the number of gobies within each coral) decreased similarly by 28–30%. After heatwave-induced bleaching, coral diameter decreased substantially (47%) and gobies mostly inhabited corals singly. Despite several coral species persisting after bleaching, all goby species declined, leaving 78% of corals uninhabited. These findings suggest that gobies, which are important mutual symbionts for corals, are unable to cope with consecutive disturbances. This disproportionate decline could lead to ecosystem-level disruptions through loss of key symbiont services to corals.

The Tensile and Flexural Forces of Acropora Reef Waste Particulate-Enchanced Polyester Composites

Composite is a material that combines two or more materials that basically dissimilar chemical or physical properties from one another. In this research, we used Acropora coral reef waste particulate and Resin Polyester BQTN type 157 with Methyl ethyl ketone peroxide (MEKP) 1% as the hardener. The Hand Lay-Up molding technique is used in the process of making the material. The tensile and flexure test is done according to the ASTM D3090 and ASTM D790 – 03 standards. The purpose of this research is to discover the means to produce a composite enhanced by Acropora coral reef waste with polyester matrix and to learn the tensile and flexure strength from the Acropora coral reef waste particulate-enhanced polyester composites with mass fraction varieties of 10%, 20%, 30%, and 40%. The tensile test result of Acroporal coral reef waste particulate with polyester matrix yields average tensile strength at mass fraction variety of 40% with a score of 19,66 MPa, with an Modulus score of 636,75 MPa. The flexure test result of Acropora coral reef waste particulate with polyester matrix yields average flexure stress at mass fraction variety of 40% with a score of 112,56 MPa, with an average Elastic Modulus score of 3098,96 MPa.

Downslope migration of free-living corals (Scleractinia: Fungiidae) in typhoon-exposed reef habitats at Okinawa, Japan

Offshore Onna Village, Okinawa Island, Japan, there is a large and densely covered coral assemblage of free-living mushroom corals (Scleractinia: Fungiidae) on a reef slope at depths from 20 m to 32 m, covering an area of approximately 350 × 40 m2. From previous research, it is known that migration distances of mushroom corals may depend on coral shapes, coral sizes, substrate, and bottom inclination. However, until now there have been no published examples of regular Fungiidae movement and behavior from typhoon-exposed coastlines, such as those in the western Pacific Ocean. Our surveys across three years offshore Onna Village show that mushroom corals always move in down-slope direction from shallow to deeper reef zones. The results indicated that mushroom corals migrated faster in autumn than in other seasons, and that oval-elongate fungiids, and particularly those with a smooth underside, migrated more quickly than species with other shapes. Surprisingly, we observed a negative relationship between the presence of typhoons and migration rates. We also observed active migration by fungiid individuals to escape situations in which they were threatened to become overgrown by Acropora corals, or when they needed to escape from burial underneath coral debris.

Changes in the colour and photosynthetic efficiency of the hermatypic coral Acropora tenuis exposed to Irgarol 1051 at 30 °C seawater temperature

Besides global warming, coral reefs face various anthropogenic threats, including watershed-based and marine-based contaminants. Recently, Irgarol 1051, a photosystem II herbicide, has been introduced as a “booster” agent in copper-based antifouling paints after global ban of tributyltin (TBT) in January 2008. Irgarol is considered to pose a potential risk to corals. In this study, a clone of Acropora tenuis separated from the colony collected from Sesoko Island, Okinawa, southern Japan, was exposed to 1.0 μg L−1 Irgarol at 27.5 °C and 30.0 °C (higher than the temperature in the warmest month in southern Japan) for 7 d. The coral colour was converted to RGB values, ranging from 0 (darkest) to 255 (brightest). The RGB values under both temperature treatments slightly decreased in the control (no herbicide exposure), but those in both 27.5 °C and 30.0 °C Irgarol treatments increased after day 3. The maximum effective quantum yield (ΔF/Fm′) slightly increased in both 27.5 °C and 30.0 °C control treatments, but decreased in 27.5 °C and 30.0 °C Irgarol treatments after day 1. The exposure to 1.0 μg L−1 Irgarol induced significant differences in RGB values and ΔF/Fm′ compared with those in the control at the same temperature. Regarding the temperature difference (27.5 °C vs. 30.0 °C), no significant differences in RGB values and ΔF/Fm′ were detected in both control and Irgarol treatments. Our results revealed no significant combined effect of Irgarol exposure and 30.0 °C on A. tenuis. These findings suggest that 30.0 °C is a normally inhabitable environmental temperature for A. tenuis. The bleaching of A. tenuis is more likely caused by the exposure to 1.0 μg L−1 Irgarol than by the exposure to high seawater temperature of 30.0 °C.

The transformation of Caribbean coral communities since humans.

The mass die‐off of Caribbean corals has transformed many of this region’s reefs to macroalgal‐dominated habitats since systematic monitoring began in the 1970s. Although attributed to a combination of local and global human stressors, the lack of long‐term data on Caribbean reef coral communities has prevented a clear understanding of the causes and consequences of coral declines. We integrated paleoecological, historical, and modern survey data to track the occurrence of major coral species and life‐history groups throughout the Caribbean from the prehuman period to the present. The regional loss of Acropora corals beginning by the 1960s from local human disturbances resulted in increases in the occurrence of formerly subdominant stress‐tolerant and weedy scleractinian corals and the competitive hydrozoan Millepora beginning in the 1970s and 1980s. These transformations have resulted in the homogenization of coral communities within individual countries. However, increases in stress‐tolerant and weedy corals have slowed or reversed since the 1980s and 1990s in tandem with intensified coral bleaching and disease. These patterns reveal the long history of increasingly stressful environmental conditions on Caribbean reefs that began with widespread local human disturbances and have recently culminated in the combined effects of local and global change.

Identification and classification of Croceivirga thetidis sp. nov., a marine Flavobacteriaceae isolated from the hard coral Acropora.

A taxonomic investigation using a polyphasic method was conducted to identify a novel marine flavobacterium, designated as DJ-13T, isolated from the hard coral Acropora sp. collected at Okinawa, Japan. Bacterial cells were Gram-stain-negative, yellow-colored, strictly aerobic, rod-shaped, catalase- and oxidase-positive, non-motile, and chemoorganoheterotrophic. The novel isolate grew at NaCl concentrations of 0.5-7%, pH 6.5-9.0, and 15-37°C. A phylogenetic study on the basis of the 16S rRNA gene sequence revealed that strain DJ-13T belongs to the family Flavobacteriaceae and that it shared the greatest sequence similarity (95.9%) with Croceivirga lutea CSW06T. Strain DJ-13T comprised iso-C17:0 3-OH, iso-C15:0, and iso-C15:1 G as the main (> 10%) cellular fatty acids. Menaquinone-6 (MK-6) was the only respiratory quinone. The assembled draft genome size of strain DJ-13T was 3.71 Mbp with G + C content of 38.7mol%. The average nucleotide identity (ANI), digital DNA-DNA hybridization (dDDH), and average amino acid identity (AAI) values of DJ-13T and the species of the genus Croceivirga were found to be 74.9-75.5%, 13.4-14.7%, and 68.2-72.4%, respectively. Strain DJ-13T contained phosphatidylethanolamine, two unidentified aminolipids, and five unidentified lipids as polar lipids. From the polyphasic taxonomic results presented, the strain is considered to represent a novel species of the genus Croceivirga for which the name Croceivirga thetidis sp. nov. is proposed. The type strain of C. thetidis sp. nov. is DJ-13T (= KCTC 72790T = NBRC 114252T).

Outplanting of branching Acropora enhances recolonization of a fish species and protects massive corals from predation

Damselfish of the genus Stegastes inhabit territories and cultivate algal gardens on branching corals of the genus Acropora, aggressively protecting their territories from other fish and preventing predation upon corals within the territory. This behaviour has important ecological impacts and could also be useful in reducing predation on outplanted corals during reef restoration efforts. However, the degree of protection from predators may depend on the ability of Stegastes spp. to recolonise outplanted or newly established coral colonies. Protection of bleaching-resilient massive corals within territories may be of particular importance due to the role of these corals in maintaining coral cover following bleaching events. This study examined whether the presence of Stegastes spp. reduces predation on the massive bleaching-resilient coral Porites lutea in the Mauritian lagoon, and whether Stegastes spp. readily colonise outplanted branching coral fragments and provide adjacent massive corals with indirect protection from predation. Predation levels on wild-occurring and outplanted P. lutea within and outside Stegastes spp. territories were measured. In addition, Acropora muricata branches were outplanted adjacent to wild P. lutea colonies outside Stegastes spp. territories, and recolonisation of these outplants by Stegastes spp. and the impacts of recolonisation on predation were monitored. Both wild and outplanted P. lutea colonies within Stegastes spp. territories sustained less predation damage compared to colonies outside territories. Stegastes spp. recolonized outplanted A. muricata colonies within six months of outplanting, and in doing so returned predation protection to adjacent P. lutea colonies. The ability of Stegastes spp. to colonise outplanted corals and provide indirect protection to adjacent massive bleaching-resilient corals may inform coral outplanting efforts in systems where Stegastes spp. are common. Encouraging Stegastes spp. recolonisation may help to reduce predation damage to corals within territories and potentially improve the success of rehabilitation efforts.

Asymmetric physiological response of a reef-building coral to pulsed versus continuous addition of inorganic nutrients

Coral reefs, especially those located near-shore, are increasingly exposed to anthropogenic, eutrophic conditions that are often chronic. Yet, corals under unperturbed conditions may frequently receive natural and usually temporary nutrient supplementation through biological sources such as fishes. We compared physiological parameters indicative of long- and short-term coral health (day and night calcification, fragment surface area, productivity, energy reserves, and tissue stoichiometry) under continuous and temporary nutrient enrichment. The symbiotic coral Acropora intermedia was grown for 7 weeks under continuously elevated (press) levels of ammonium (14 µmol L−1) and phosphate (10 µmol L−1) as separate and combined treatments, to discern the individual and interactive nutrient effects. Another treatment exposed A. intermedia twice-daily to an ammonium and phosphate pulse of the same concentrations as the press treatments to simulate natural biotic supplementation. Press exposure to elevated ammonium or phosphate produced mixed effects on physiological responses, with little interaction between the nutrients in the combined treatment. Overall, corals under press exposure transitioned resources away from calcification. However, exposure to nutrient pulses often enhanced physiological responses. Our findings indicate that while continuous nutrient enrichment may pose a threat to coral health, episodic nutrient pulses that resemble natural nutrient supplementation may significantly benefit coral health and physiology.

Intraspecific variation in polar and nonpolar metabolite profiles of a threatened Caribbean coral.

Research aimed at understanding intraspecific variation among corals could substantially increase understanding of coral biology and improve outcomes of active restoration efforts. Metabolomics is useful for identifying physiological drivers leading to variation among genotypes and has the capacity to improve our selection of candidate corals that express phenotypes beneficial to restoration. Our study aims to compare metabolomic profiles among known, unique genotypes of the threatened coral Acropora cervicornis. In doing so, we seek information related to the physiological characteristics driving variation among genotypes, which could aid in identifying genets with desirable traits for restoration. We applied proton nuclear magnetic resonance (1H-NMR) and liquid chromatography-mass spectrometry (LC-MS) to identify and compare metabolomic profiles for seven unique genotypes of A. cervicornis that previously exhibited phenotypic variation in a common garden coral nursery. Significant variation in polar and nonpolar metabolite profiles was found among A. cervicornis genotypes. Despite difficulties identifying all significant metabolites driving separation among genotypes, our data support previous findings and further suggest metabolomic profiles differ among various genotypes of the threatened species A. cervicornis. The implementation of metabolomic analyses allowed identification of several key metabolites driving separation among genotypes and expanded our understanding of the A. cervicornis metabolome. Although our research is specific to A. cervicornis, these findings have broad relevance for coral biology and active restoration. Furthermore, this study provides specific information on the understudied A. cervicornis metabolome and further confirmation that differences in metabolome structure could drive phenotypic variation among genotypes.

Latitudinal variation in monthly-scale reproductive synchrony among Acropora coral assemblages in the Indo-Pacific

Early research into coral reproductive biology suggested that spawning synchrony was driven by variations in the amplitude of environmental variables that are correlated with latitude, with synchrony predicted to break down at lower latitudes. More recent research has revealed that synchronous spawning, both within and among species, is a feature of all speciose coral assemblages, including equatorial reefs. Nonetheless, considerable variation in reproductive synchrony exists among locations and the hypothesis that the extent of spawning synchrony is correlated with latitude has not been formally tested on a large scale. Here, we use data from 90 sites throughout the Indo-Pacific and a quantitative index of reproductive synchrony applied at a monthly scale to demonstrate that, despite considerable spatial and temporal variation, there is no correlation between latitude and reproductive synchrony. Considering the critical role that successful reproduction plays in the persistence and recovery of coral reefs, research is urgently needed to understand the drivers underpinning variation in reproductive synchrony.

Trace element proxies and stable isotopes used to identify water quality threats to elkhorn coral (Acropora palmata) at two national parks in St. Croix, USVI

Biological impairments have been documented on reefs at two national parks in St. Croix, USVI. Although several water quality parameters have been out of compliance with USVI criteria, whether these parameters or other pollutants are responsible for coral health impacts is unknown. Trace elements quantified in sediment showed four sites at SARI, which is closer than BUIS to settlements and land-derived anthropogenic outflows, had Cu mass fractions above sediment quality guidelines for invertebrate toxicity. Trace elements were also analyzed in the skeleton of threatened elkhorn coral, Acropora palmata, to evaluate potential exposure. Heavy metals (Pb, Zn) were significantly greater in coral skeleton at SARI than BUIS. Cu, Pb, and Zn may be impacting coral health in these parks. Potential anthropogenic sources of these metals were revealed by the coral tissue stable isotope levels (δ13C and δ15N). These findings provide a framework for determining heavy metal impacts on these invaluable reefs.

Seasonal fluctuations in symbiotic bacteria and their role in environmental adaptation of the scleractinian coral Acropora pruinosa in high-latitude coral reef area of the South China Sea

Coral-associated bacterial communities are paramount for coral ecosystems and holobiont health. However, the role of symbiotic bacteria in the adaptation of high-latitude corals to seasonal fluctuations remains underexplored. Therefore, we used 16S rRNA-based high-throughput sequencing to analyze the symbiotic bacterial diversity, composition, and core bacterial community in high-latitude coral and explored the seasonal fluctuation characteristics of symbiotic bacterial communities. We found that bacterial richness and α-diversity changed significantly across different seasons. Additionally, the community structure recombined seasonally, with different dominant bacterial phyla and genera in different seasons. However, the symbiotic bacterial community structures of Acropora pruinosa in winter and spring were similar. Proteobacteria were the dominant bacteria in spring, autumn, and winter. In summer, the dominant bacterial taxa were Bacteroidota and Proteobacteria. Ralstonia was the dominant bacterial genus in spring and winter, whereas in autumn, BD1-7_clade was dominant. Linear discriminant analysis effect size identified 20 abundant genera between the different groups. Core microbiome analysis revealed that 12 core bacterial operational taxonomic units were associated with A. pruinosa in all seasons, seven of which varied with the seasons, changing between dominant and rare. Distance-based redundancy and variation partitioning analyses revealed that sea surface temperature was the major contributor of variation in the microbial community structure. We hypothesized that the high diversity and abundance of symbiotic bacteria and the increase in Prosthecochloris abundance in coral in summer can help A. pruinosa maintain its physiological functions, ameliorating the negative physiological effects of the decrease in Symbiodiniaceae density under high-temperature stress. Thus, the rapid reorganization of the symbiotic bacterial community structure and core microflora in different seasons may allow the corals to adapt to large seasonal environmental fluctuations. In conclusion, seasonal variation of bacteria plays an important role in coral adaptation to large environmental fluctuations.

Combined effects of climate change and the herbicide diuron on the coral Acropora millepora

The Great Barrier Reef (GBR) is threatened by climate change and local pressures, including contaminants in nearshore habitats. This study investigated the combined effects of a GBR-relevant contaminant, the herbicide diuron, under current and two future climate scenarios on the coral Acropora millepora. All physiological responses tested (effective quantum yield (ΔF/Fm′), photosynthesis, calcification rate) were negatively affected with increasing concentrations of diuron. Interactive effects between diuron and climate were observed for all responses; however, climate had no significant effect on ΔF/Fm′ or calcification rates. Photosynthesis was negatively affected as the climate scenarios were adjusted from ambient (28.1 °C, pCO2 = 397 ppm) to RCP8.5 2050 (29.1 °C, pCO2 = 680 ppm) and 2100 (30.2 °C, pCO2 = 858 ppm) with EC50 values declining from 19.4 to 10.6 and 2.6 μg L−1 diuron in turn. These results highlight the likelihood that water quality guideline values may need to be adjusted as the climate changes.

Cytogenetic markers using single-sequence probes reveal chromosomal locations of tandemly repetitive genes in scleractinian coral Acropora pruinosa

The short and similar sized chromosomes of Acropora pose a challenge for karyotyping. Conventional methods, such as staining of heterochromatic regions, provide unclear banding patterns that hamper identification of such chromosomes. In this study, we used short single-sequence probes from tandemly repetitive 5S ribosomal RNA (rRNA) and core histone coding sequences to identify specific chromosomes of Acropora pruinosa. Both the probes produced intense signals in fluorescence in situ hybridization, which distinguished chromosome pairs. The locus of the 5S rDNA probe was on chromosome 5, whereas that of core histone probe was on chromosome 8. The sequence of the 5S rDNA probe was composed largely of U1 and U2 spliceosomal small nuclear RNA (snRNA) genes and their interspacers, flanked by short sequences of the 5S rDNA. This is the first report of a tandemly repetitive linkage of snRNA and 5S rDNA sequences in Cnidaria. Based on the constructed tentative karyogram and whole genome hybridization, the longest chromosome pair (chromosome 1) was heteromorphic. The probes also hybridized effectively with chromosomes of other Acropora species and population, revealing an additional core histone gene locus. We demonstrated the applicability of short-sequence probes as chromosomal markers with potential for use across populations and species of Acropora.

An Experimental Framework for Selectively Breeding Corals for Assisted Evolution

Coral cover on tropical reefs has declined during the last three decades due to the combined effects of climate change, destructive fishing, pollution, and land use change. Drastic reductions in greenhouse gas emissions combined with effective coastal management and conservation strategies are essential to slow this decline. Innovative approaches, such as selective breeding for adaptive traits combined with large-scale sexual propagation, are being developed with the aim of pre-adapting reefs to increased ocean warming. However, there are still major gaps in our understanding of the technical and methodological constraints to producing corals for such restoration interventions. Here we propose a framework for selectively breeding corals and rearing them from eggs to 2.5-year old colonies using the coral Acropora digitifera as a model species. We present methods for choosing colonies for selective crossing, enhancing early survivorship in ex situ and in situ nurseries, and outplanting and monitoring colonies on natal reefs. We used a short-term (7-day) temperature stress assay to select parental colonies based on heat tolerance of excised branches. From six parental colonies, we produced 12 distinct crosses, and compared survivorship and growth of colonies transferred to in situ nurseries or outplanted to the reef at different ages. We demonstrate that selectively breeding and rearing coral colonies is technically feasible at small scales and could be upscaled as part of restorative assisted evolution initiatives. Nonetheless, there are still challenges to overcome before selective breeding can be implemented as a viable conservation tool, especially at the post-settlement and outplanting phases. Although interdisciplinary approaches will be needed to overcome many of the challenges identified in this study, selective breeding has the potential to be a viable tool within a reef managers toolbox to support the persistence of selected reefs in the face of climate change.