Cooperative Noncovalent Interactions Research Articles

In Silico Design of Halogen-Bonding-Based Organocatalyst for Diels-Alder Reaction, Claisen Rearrangement, and Cope-Type Hydroamination.

Using DFT calculations, we investigated the use of halogen bonding (XB) interactions to accelerate and control organic reactions, namely Diels-Alder reaction, Claisen rearrangement, and Cope-type hydroamination. Our designed triarylbenzene tripodal organocatalyst is characterized by three halogen bond donors, perfluoro-iodophenyl groups. The calculated transition states unravel multiple halogen bonds between the iodine atoms and various types of halogen bond acceptors (lone pair, π and σ bonds). These cooperative noncovalent interactions provide efficient binding between the catalyst and substrate (∼15 kcal/mol binding energy) and are the key factors for transition-state stabilization and molecular recognition. On the basis of our DFT calculations and calculated turnover frequencies, the XB-catalyzed reactions are found to be competitive with the corresponding hydrogen bonding catalysis reported in literature.

Exploiting the Multidentate Nature of Chiral Disulfonimides in a Multicomponent Reaction for the Asymmetric Synthesis of Pyrrolo[1,2‐a]indoles: A Remarkable Case of Enantioinversion

AbstractA new multicomponent coupling reaction for the enantioselective synthesis of pyrrolo[1,2‐a]indoles under the catalysis of a chiral disulfonimide is described. The high specificity of the reaction is a consequence of the multidentate character of the Brønsted acid catalyst. Insights from DFT calculations helped explain the unexpected high enantioselectivity observed with the simplest 3,3′‐unsubstituted binaphthyl catalyst as a result of transition‐state stabilization by a network of cooperative noncovalent interactions. The remarkable enantioinversion resulting from the simple introduction of substituents at 3‐ and 3′‐positions, the first reported example of this phenomenon in the context of binaphthalene‐derived Brønsted acid catalysis, was instead attributed to destabilizing steric interactions.

Exploiting the Multidentate Nature of Chiral Disulfonimides in a Multicomponent Reaction for the Asymmetric Synthesis of Pyrrolo[1,2-a]indoles: A Remarkable Case of Enantioinversion.

A new multicomponent coupling reaction for the enantioselective synthesis of pyrrolo[1,2-a]indoles under the catalysis of a chiral disulfonimide is described. The high specificity of the reaction is a consequence of the multidentate character of the Brønsted acid catalyst. Insights from DFT calculations helped explain the unexpected high enantioselectivity observed with the simplest 3,3'-unsubstituted binaphthyl catalyst as a result of transition-state stabilization by a network of cooperative noncovalent interactions. The remarkable enantioinversion resulting from the simple introduction of substituents at 3- and 3'-positions, the first reported example of this phenomenon in the context of binaphthalene-derived Brønsted acid catalysis, was instead attributed to destabilizing steric interactions.

Reversibly Switching Bilayer Permeability and Release Modules of Photochromic Polymersomes Stabilized by Cooperative Noncovalent Interactions.

We report on the fabrication of photochromic polymersomes exhibiting photoswitchable and reversible bilayer permeability from newly designed poly(ethylene oxide)-b-PSPA (PEO-b-PSPA) diblock copolymers, where SPA is spiropyran (SP)-based monomer containing a unique carbamate linkage. Upon self-assembling into polymersomes, SP moieties within vesicle bilayers undergo reversible phototriggered isomerization between hydrophobic spiropyran (SP, λ2 > 450 nm irradiation) and zwitterionic merocyanine (MC, λ1 < 420 nm irradiation) states. For both SP and MC polymersomes, their microstructures are stabilized by multiple cooperative noncovalent interactions including hydrophobic, hydrogen bonding, π-π stacking, and paired electrostatic (zwitterionic) interactions, with the latter two types being exclusive for MC polymersomes. Control experiments using analogous block copolymers of hydrophobic SP monomer with a carbonate linkage (SPO) and conventional spiropyran methacrylate monomer (SPMA) containing a single ester functionality were then conducted, revealing that carbamate-incurred hydrogen bonding interactions in PEO-b-PSPA are crucial for polymersome stabilization in the zwitterionic MC state. Moreover, reversible phototriggered SP-to-MC polymersome transition is accompanied by membrane polarity and permeability switching from being nonimpermeable to selectively permeable toward noncharged, charged, and zwitterionic small molecule species below critical molar masses. Intriguingly, UV-actuated MC polymersomes possess two types of release modules: (1) sustained release upon short UV irradiation duration by taking advantage of the unexpectedly slow spontaneous MC-to-SP transition kinetics (t1/2 > 20 h) under dark conditions; (2) on-demand and switchable release under alternated UV-vis light irradiation. We further demonstrate photoswitchable spatiotemporal release of 4',6-diamidino-2-phenylindole (DAPI, cell nuclei-staining dye) within living HeLa cells.

Conjugated polymer/fullerene nanostructures through cooperative non-covalent interactions for organic solar cells

We have previously reported the formation of polymer/fullerene core–shell composite nanofibers (NFs) through self-assembly of functionalized conjugated block copolymers and fullerene derivatives, by cooperation of orthogonal non-covalent interactions including block copolymer phase separation, fullerene aggregation, poly(3-hexylthiophene) (P3HT) crystallization and complementary hydrogen bonding. These NFs displayed improved solar cell performances and the core–shell type structures are generally insensitive to polymer/fullerene weight ratios. In order to better understand the self-assembly mechanisms of such complex systems, we have prepared a new block copolymer (P3) having a different block length ratio and studied its solution and thin film morphologies in the presence of fullerene derivatives at different weight ratios. Worm-like micelles are observed for P3 in mixed-solvent solutions, distinctly different from the well-defined NFs observed previously. Upon fullerene additions, the solution morphologies gradually change into hierarchically complex nanostructures with varying fullerene contents. Thin film morphologies are studied by atomic force microscopy (AFM) and the blends are applied in organic solar cell (OSC) devices. Our present studies provide detailed information on the self-assembly behaviors of conjugated block copolymers and fullerenes under cooperative orthogonal non-covalent interactions.

Designation and Exploration of Halide-Anion Recognition Based on Cooperative Noncovalent Interactions Including Hydrogen Bonds and Anion-π.

A novel urea-based anion receptor with an electron-deficient aromatic structural unit, N-p-nitrophenyl-N-(4-vinyl-2-five-fluoro-benzoic acid benzyl ester)-phenyl-urea (FUR), was designed to probe the potential for halide-anion recognition through the cooperation of two distinct noncovalent interactions including hydrogen bonds and anion-π in this work. The nature of the recognition interactions between halide-anion and the designed receptor was theoretically investigated at the molecular level. The geometric features of the hydrogen bond and anion-π of the FUR@X(-) (X = F, Cl, Br, and I) systems were thoroughly investigated. The binding energies and thermodynamic information on the halide-anion recognitions show that the presently designed FUR might selectively recognize anion F(-) based on the cooperation of the N-H···F(-) hydrogen bond and anion-π interactions both in vacuum and in solvents. IR and UV-visible spectra of free FUR and FUR@F(-) have been simulated and discussed qualitatively, which may be helpful for further experimental investigations in the future. Additionally, the electronic properties and behaviors of the FUR@X(-) systems were discussed according to the calculations on the natural bond orbital (NBO) data, molecular electrostatic potential (MEP), and weak interaction regions.

Strategies to create hierarchical self-assembled structures via cooperative non-covalent interactions.

Cooperative phenomena are common processes involved in the hierarchical self-assembly of multiple systems in nature, such as the tobacco mosaic virus and a cell's cytoskeleton. Motivated by the high degree of order exhibited by these systems, a great deal of effort has been devoted in the past two decades to design hierarchical supramolecular polymers by combining different classes of cooperative interactions. In this review, we have classified the field of supramolecular polymers depending on the cooperative non-covalent forces driving their formation, with particular emphasis on recent examples from literature. We believe that this overview would help scientists in the field to design novel self-assembled systems with improved complexity and functionalities.

Stable and Controllable Polymer/Fullerene Composite Nanofibers through Cooperative Noncovalent Interactions for Organic Photovoltaics

A novel methodology of precisely constructing stable and controllable conjugated polymer (CP)/fullerene nanostructures is presented. By building in noncovalent interactions between CP nanofibers (NFs) and fullerene derivatives, supramolecular polymer/fullerene composite NFs are obtained in solution for the first time. Specifically, a conjugated block copolymer having poly(3-hexylthiophene) (P3HT) backbone selectively functionalized with polar isoorotic acid (IOA) moieties, P1, is used as the building block. Self-assembly of P1 in mixed solvents leads to well-defined NFs decorated with IOA groups on the periphery, onto which phenyl-C61-butyric acid methyl ester (PCBM) molecules are subsequently attached noncovalently. Formation of such complex structures are studied in detail and confirmed by UV–vis absorption spectroscopy, transmission electron microscopy (TEM), atomic force microscopy (AFM), and X-ray scattering measurements. Application of these composite NFs in organic photovoltaic (OPV) devices not on...

Supramolecular Dendritic Polymers: From Synthesis to Applications

CONSPECTUS: Supramolecular dendritic polymers (SDPs), which perfectly combine the advantages of dendritic polymers with those of supramolecular polymers, are a novel class of non-covalently bonded, highly branched macromolecules with three-dimensional globular topology. Because of their dynamic/reversible nature, unique topological structure, and exceptional physical/chemical properties (e.g., low viscosity, high solubility, and a large number of functional terminal groups), SDPs have attracted increasing attention in recent years in both academic and industrial fields. In particular, the reversibility of non-covalent interactions endows SDPs with the ability to undergo dynamic switching of structure, morphology, and function in response to various external stimuli, such as pH, temperature, light, stress, and redox agents, which further provides a flexible and robust platform for designing and developing smart supramolecular polymeric materials and functional supramolecular devices. The existing SDPs can be systematically classified into the following six major types according to their topological features: supramolecular dendrimers, supramolecular dendronized polymers, supramolecular hyperbranched polymers, supramolecular linear-dendritic block copolymers, supramolecular dendritic-dendritic block copolymers, and supramolecular dendritic multiarm copolymers. These different types of SDPs possess distinct morphologies, unique architectures, and specific functions. Benefiting from their versatile topological structures as well as stimuli-responsive properties, SDPs have displayed not only unique characteristics or advantages in supramolecular self-assembly behaviors (e.g., controllable morphologies, specific performance, and facile functionalization) but also great potential to be promising candidates in various fields. In this Account, we summarize the recent progress in the synthesis, functionalization, and self-assembly of SDPs as well as their potential applications in a wide range of fields. A variety of synthetic methods using non-covalent interactions have been established to prepare different types of SDPs based on varied mono- or multifunctionalized building blocks (e.g., monomer, dendron, dendrimer, and hyperbranched polymer) with homo- or heterocomplementary units. In addition, SDPs can be further endowed with excellent functionalities by employing different modification approaches involving terminal, focal-point, and backbone modification. Similar to conventional dendritic polymers, SDPs can self-assemble into diverse supramolecular structures such as micelles, vesicles, fibers, nanorings, tubes, and many hierarchical structures. Finally, we highlight some typical examples of recent applications of SDP-based systems in biomedical fields (e.g., controlled drug/gene/protein delivery, bioimaging, and biomimetic chemistry), nanotechnology (e.g., nanoreactors, catalysis, and molecular imprinting), and functional materials. The current research on SDPs is still at the very early stage, and much more work needs to be done. We anticipate that future studies of SDPs will focus on developing multifunctional, hierarchical supramolecular materials toward their practical applications by utilization of cooperative non-covalent interactions.

Supramolecular photochirogenesis

Supramolecular photochirogenesis is a rapidly growing interdisciplinary area of science at the boundary of photochemistry, asymmetric synthesis and supramolecular chemistry. The major advantage of supramolecular photochirogenesis over the conventional molecular one is entropic in origin, being achieved by preorganizing substrate(s) in the ground state and manipulating subsequent photochemical transformation by weak but non-transient interactions in chiral supramolecular media. The chirality transfer often becomes more efficient through the cooperative non-covalent interactions and the confinement by host in both ground and excited states. Thus, all of the ground- and excited-state events, including complexation stoichiometry and affinity, chiroptical properties, photophysical behaviour and photochemical reactivity, jointly play pivotal roles in supramolecular photochirogenesis. This may appear to cause complication but in reality expands the range of manipulable factors and available experimental/theoretical tools for elucidating the mechanism and controlling photochirogenic processes both thermodynamically and kinetically, from which some new concepts/methodologies unique to supramolecular photochemistry, such as non-sensitizing catalytic photochirogenesis and wavelength-controlled photochirogenesis, have already been developed. In this review, we will discuss the recent progress and future perspective of supramolecular photochirogenesis.

Designed self-assemblies based on cooperative noncovalent interactions including anion–π, lone-pair electron–π and hydrogen bonding

A dual functional tetraoxacalix[2]arene[2]triazine derivative as a building block was synthesized. Designed self-assemblies were obtained under the guidance of multiple noncovalent interactions including anion–π, lone-pair electron–π and hydrogen bonding.

Effect of cooperative non-covalent interactions on the solid state heterochiral self-assembly: The concepts of isotactic and syndiotactic arrangements in coordination complex

Solid state diastereoselective self-assembly of five copper(II) heterochiral complexes containing racemic Schiff bases L1H and L2H (where L1H=1-((1-(2-pyridyl)ethylimino)methyl)-2-naphthol ; L2H=2-((phenyl(2-pyridyl)methylimino)-methyl)phenol) in crystal engineering contexts are discussed. Complexes 1–5 are synthesized using ligand L1H (1–3), L2H (4, 5), CuCl2·2H2O, Cu(ClO4)2·6H2O and co-ligands such as N3− or N(CN)2− and are conclusively structurally characterized. Determination of molecular structures of 1–5 confirmed the presence of a di-copper core with an inversion center located directly between the two copper ions. In 1–5, within one centrosymmetric dimer one of the ligands possess R configuration whereas other possess S configuration resulting a heterochiral dimerization of ligands around copper(II) center in chiral self-discriminating manner. The significant effects of different non-covalent interactions and co-ligands on self-assembly of heterochiral dimers into networks are studied. The presence of π⋯π interaction between face to face benzene-naphthalene and naphthalene-naphthalene dimers are perceived. The isotactic and syndiotactic arrangements of the coordination complex through non-covalent interactions are also studied.

Cooperative and Noncooperative Assembly of Oligopyrenotides Resolved by Atomic Force Microscopy

The supramolecular assembly of amphiphilic oligopyrenotide building blocks (covalently linked heptapyrene, Py7) is studied by atomic force microscopy (AFM) in combination with optical spectroscopy. The assembly process is triggered in a controlled manner by increasing the ionic strength of the aqueous oligomer solution. Cooperative noncovalent interactions between individual oligomeric units lead to the formation of DNA-like supramolecular polymers. We also show that the terminal attachment of a single cytidine nucleotide to the heptapyrenotide (Py7-C) changes the association process from a cooperative (nucleation–elongation) to a noncooperative (isodesmic) regime, suggesting a structure misfit between the cytidine and the pyrene units. We also demonstrate that AFM enables the identification and characterization of minute concentrations of the supramolecular products, which was not accessible by conventional optical spectroscopy.

Supramolecular Aggregation of Block Copolymers in the Solid State As Assisted by the Selective Formation of Inclusion Crystals

Supramolecular self-assembly of a host molecule with selected blocks of triblock copolymers enabled the formation of inclusion 2D nanocrystals that connect consecutive copolymer chains. Indeed, the selective inclusion of ethylene oxide (EO) blocks in inclusion crystals and the phase segregation of PO blocks of poly(ethylene oxide-b-propylene oxide-b-ethylene oxide) (EO(n)PO(m)EO(n)) triblock copolymers provide an efficient route to create alternated crystalline lamellae and amorphous layers, forming a well-organized material. The spontaneous formation of the supramolecular architectures was realized by a solvent-free mechanochemical approach or by thermal treatment of the copolymer and host (tris-o-phenylenedioxycyclotriphosphazene), as demonstrated by in situ synchrotron X-ray diffraction. The driving force for the fabrication of crystalline inclusion compounds with selected EO segments is based on the establishment of cooperative noncovalent intermolecular interactions, while steric effects prevent the formation of the inclusion crystal with the remaining PO blocks. The 2D (1)H-(13)C solid state and fast-(1)H MAS NMR provide direct evidence of the intimate interactions between the host and EO block and the topology of the block copolymer in the material. The large magnetic susceptibility generated by the aromatic host nanochannels surrounding the included EO chains was interpreted by ab initio calculations (HF-GIAO/DGDZVP) that carefully reproduce the chemical shifts associated with the effects of guest-host interactions. The theoretical calculations enable the measurement of short intermolecular distances between the host and the target block, demonstrating the existence of a diffuse network of multiple CH···π host-guest interactions that improve the robustness of the supramolecular architecture. The overall evidence enforces the strategy of combining the use of block copolymers and clathrate-forming molecules to fabricate organized materials through noncovalent interactions.

Unprecedented π⋯π interaction between an aromatic ring and a pseudo-aromatic ring formed through intramolecular H-bonding in a bidentate Schiff base ligand: crystal structure and DFT calculations

A combination of a single crystal X-ray diffraction study and density functional theory calculations has been applied to a bidentate Schiff base compound to elucidate different cooperative non-covalent interactions involved in the stabilization of the keto form over the enol one in the solid state. The single crystal X-ray structure reveals a remarkable supramolecular assembly of the keto form through a cyclic hydrogen bonded dimeric motif. The most interesting feature in the supramolecular assembly is the formation of a 'dimer of dimer' motif by π···π, CH···π and N···O/O···O interactions in which the π···π interaction involving the aromatic phenyl ring and the intramolecularly hydrogen bonded pseudo-aromatic ring of the keto form lying just above or below the phenyl ring of the other dimer seems to be unprecedented. The optimized geometry of the hydrogen bonded dimeric motif of the keto form of the organic molecule has been obtained by DFT calculations and agrees very well with that found within the crystalline state. The X-ray crystallographic geometry of the 'dimer of dimer' has also been computed, which shows that in the HOMO, the π electrons are localized in the phenyl rings away from each other, while in the LUMO, there is a strong π-π interaction between the phenyl ring of one dimer with the pseudo-aromatic ring of another dimer with an energy estimated to be 7.95 kJ mol(-1). Therefore, on HOMO → LUMO excitation there is localization of π electrons in the central part of the complex moiety which plays a stabilizing role of the dimer of dimer motif in the solid state.

Cooperative Self-Assembly-Assisted Formation of Monodisperse Optically Active Spherical and Anisotropic Nanoparticles

We report a new method in which spontaneous self-assembly is employed to synthesize monodisperse polymer nanoparticles with controlled size (<50 nm), shape, tunable functionality, and enhanced solvent and thermal stability. Cooperative noncovalent interactions, such as hydrogen bonding and aromatic pi-pi stacking, assist self-assembly of amphiphilic macromolecules (polystyrene-block-polyvinylpyridine, PS--PVP) and structure directing agents (SDAs) to form both spherical and anisotropic solid polymer nanoparticles with SDAs residing in the particle core surrounded by the polymers. Through detailed investigations by scanning electron microscopy and transmission electron microscopy (TEM), we have rationalized nanoparticle morphology evolution and dependence on factors such as SDA concentration and PVP size. By keeping the PS chain size constant, the particle morphology progresses from continuous films to spherical particles, and on to cylindrical nanowires or rods with increasing the PVP chain size. The final nanoparticles are very stable and can be redispersed in common solvents to form homogenous solutions and thin films of ordered nanoparticle arrays through solvent evaporation processes. These nanoparticles exhibit tunable fluorescent colors (or emissions) depending on the choices of the central SDAs. Our method is simple and general without requiring complicated synthetic chemistry, stabilizing surfactants, or annealing procedures (e.g., temperature or solvent annealing), making scalable synthesis feasible.

Heterometallic complex formation on p-sulfonatothiacalix[4]arene platform resulting in pH- and redox-modification of [Ru(bpy) 3] 2+ luminescence

The pH-dependent heterometallic complex formation with p-sulfonatothiacalix[4]arene (TCAS) as bridging ligand in aqueous solutions was revealed by the use of spectrophotometry, nuclear magnetic relaxation and fluorimetry methods. The novelty of the structural motif presented is that the appendance of emission metal center ([Ru(bpy) 3] 2+) is achieved through the cooperative non-covalent interactions with the upper rim of TCAS. The second metal block (Fe(III), Fe(II) and Mn(II)), bound with the lower rim of TCAS in the inner sphere coordination mode is serving as quencher of [Ru(bpy) 3] 2+ emission. The difference between the complex ability of Fe(III) and Fe(II) ions provides pH conditions for redox-dependent emission of [Ru(bpy) 3] 2+.

Carbohydrate−π Interactions: What Are They Worth?

Protein-carbohydrate interactions play an important role in many biologically important processes. The recognition is mediated by a number of noncovalent interactions, including an interaction between the alpha-face of the carbohydrate and the aromatic side chain of the protein. To elucidate this interaction, it has been studied in the context of a beta-hairpin in aqueous solution, in which the interaction can be investigated in the absence of other cooperative noncovalent interactions. In this beta-hairpin system, both the aromatic side chain and the carbohydrate were varied in an effort to gain greater insight into the driving force and magnitude of the carbohydrate-pi interaction. The magnitude of the interaction was found to vary from -0.5 to -0.8 kcal/mol, depending on the nature of the aromatic ring and the carbohydrate. Replacement of the aromatic ring with an aliphatic group resulted in a decrease in interaction energy to -0.1 kcal/mol, providing evidence for the contribution of CH-pi interactions to the driving force. These findings demonstrate the significance of carbohydrate-pi interactions within biological systems and also their utility as a molecular recognition element in designed systems.

Self-Assembly of a Double Calix[6]arene Pseudorotaxane in Oriented Channels

A synthetic study to disclose the more appropriate manner by which two calix[6]arene units could be connected for the construction of an extended tubular structure was undertaken. As a result, a head-to-tail double calix[6]arene having the structure of an oriented nanotube that is about 2.6 nm long and 1.6 nm wide was prepared and characterized. This molecule is able to act as a wheel-type host and forms a supramolecular complex with an axle-type molecule, derived from 4,4'-bipyridinium (viologen), through very efficient self-assembly in solution. The properties of such a pseudorotaxane-type complex, which is stabilized by a combination of noncovalent interactions, were investigated in solution by UV/Vis absorption spectroscopy and voltammetric methods. These observations provide a clue about the location of the bipyridinium unit along the nanotube. In the solid state, the complex undergoes a further stage of self-assembly, thereby initiating extended oriented tubular structures. Crystallographic studies revealed that the positioning of the viologen dication in this asymmetric wheel is addressed by a complicated pattern of cooperative noncovalent intermolecular interactions that involve only one half of the host, whereas the remaining (more polar) half of the host is exploited to create long-range structural order that leads to a "secondary" structure of extended supramolecular channels that, in turn, self-assemble in the lattice, thus giving rise to a "tertiary" structure of parallel sandwiches of nanotubes.

Physicochemical characterization of octakis(alkyloxy)-substituted Zn(ii)-phthalocyanines non-covalently incorporated into an organogel and their remarkable morphological effect on the nanoscale-fibers

A series of octakis(alkyloxy)-substituted Zn(II)-phthalocyanines were efficiently incorporated into an organogel made of (1R,2R)-trans-1,2-bis(dodecanoylamino)cyclohexane by means of multiple cooperative non-covalent interactions, and SEM revealed the formation of unique brush-like nanostructures.