Improving the accuracy of infrared intensity calculation in exhaust system and expanding infrared suppression methods are of great significance for enhancing aircraft stealth performanc. In this paper, the infrared radiation (IR) intensity (3–5 µm) of nozzle considering the influence of turbine and afterburner are numerically studied. Initially, the flow field characteristics are computed using commercial software, followed by ray tracing simulations using the reverse Monte Carlo method (RMCM) and transmission calculations using the multi-scale multi-group wideband k distribution model (MSMGWB). The wall emissivity is determined experimentally. This paper quantitatively analyzes the difference between infrared intensity obtained through traditional computational methods and that of the actual model, revealing the impact of low-emissivity coating and turbine cooling on the infrared intensity of the integrated model. It emphasizes the suppression effects and physical mechanisms of the heat shield flanging structure on the infrared characteristics of the integrated model. The results indicate significant differences between infrared intensity derived from traditional computational methods and that from actual models. The influence of the afterburner and turbine infrared characteristics must be considered in infrared numerical studies. When the computation model is a standalone nozzle, the infrared intensity can increase by up to 541.78 % and decrease by a maximum of 14.02 % compared to the integrated model compose of the turbine, afterburner, and nozzle. For the model composed of nozzle and afterburner, the infrared intensity can decrease by up to 10.5 % under non-swirl flow condition, without any increase observed. Compared with turbine wall, changing the emissivity of afterburner wall has more significant effect on infrared suppression of integrated calculation model. Reducing the emissivity of all afterburner walls from 0.7 to 0.1 significantly reduces the infrared characteristics in the range of 0° to 12.5°, while increasing it in the range of 12.5° to 45°. Applying a low-emissivity coating only to the high-temperature walls of the afterburner can inhibit the increase in emitted radiation on the wall, thereby eliminating the increase in infrared intensity mentioned above and reducing the infrared intensity by up to 39.14 %. Compared to low-emissivity coating technology for turbine, implementing cooling measures on turbine blades can effectively reduce the infrared intensity of the integrated model, achieving a maximum reduction of 19.7 % when the blade temperature is lowered by 240 K. Adding flanging structure to the heat shield in the convergent section alters the flow field structure near the nozzle walls, lowering wall temperature and thereby suppressing the infrared characteristics of the integrated model between 10° and 80°. This results in a maximum reduction in infrared intensity of 14.75 % with negligible impact on thrust coefficients. This is the angle range where afterburner low emissivity coatings and turbine cooling cannot achieve infrared suppression. This is of great significance for infrared stealth in large angle range. Combined with the above effective infrared suppression measures, the infrared intensity can be reduced by up to 49.42 %.