Abstract The intertropical convergence zone (ITCZ), with its twice-annual passage over central Africa, is considered as the main driver of the rainfall seasonality. In this ITCZ paradigm, high rainfall occurs over regions of large low-level convergence. But recently, this paradigm was challenged over central Africa. Here, we show that a shallow meridional overturning circulation—driven by surface conditions—plays a thermodynamical control on the rainfall seasonality over central Africa. Indeed, due to the local evaporative cooling effect, the foot of the ascending branch of Hadley cells occurs where the temperature is the warmest, indicating a thermal low. This distorts the southern Hadley cell by developing its bottom-heavy structure. As result, both shallow and deep Hadley cells coexist over central Africa year-round. The deep mode is associated with the poleward transport of atmospheric energy at upper levels. The shallow mode is characterized by a shallow meridional circulation, with its moisture transport vanishing and converging in the midtroposphere rather than at lower troposphere. This midtropospheric moisture convergence is also the dominant component that shapes the vertically integrated moisture flux convergence, with little contribution of African easterly jets. This convergence zone thus controls the precipitating convection. Its meridional migration highlights the interhemispheric rainfall contrast over central Africa and outlines the unimodal seasonality. On the other hand, forced by the Congo basin cell, the precipitable water regulates the deep convection from the vegetated surface of Congo basin, acting as a continental sea. This nonlinear mechanism separates the rainfall into three distinct regimes: the moisture-convergence-controlled regime, with convective rainfall exclusively occurring in the rainy season; the local evaporation-controlled regime with drizzle in the dry season; and the precipitable-water-controlled regime, with exponential rainfall increase in the dry season.