Membrane gas separation is considered a highly promising alternative to conventional gas separation. Recently, mixed matrix membranes containing UiO-66 metal–organic frameworks (MOFs) have been demonstrated to achieve high gas separation performance, especially in CO2-related separation. To date, few studies have used morphological control strategies to enhance the gas transport properties of mixed matrix membranes. In this study, we fabricated mixed matrix membranes comprising porous UiO-66 nanoparticles and immiscible 6FDA-based polyimide blends with co-continuous structures. The selective location of UiO-66 nanoparticles within one polymer phase of the co-continuous polymer blend was observed. However, this co-continuous structure cannot be referred to as a double-percolative morphology since the percolative UiO-66 networks did not successfully form. The gas permeability and gas sorption properties of pure gases (H2, CO2, N2, O2, and CH4) in the dense membranes and mixed matrix membranes were measured using the constant-volume variable-pressure method and the dual-volume pressure decay method, respectively. On the basis of the solution–diffusion mechanism, the contributions of gas sorption and gas transport to the overall gas permeation properties were determined and examined. When the UiO-66 content reached 35 wt%, the CO2 permeability of the mixed matrix membranes was significantly increased from 16.5 Barrer to 104.7 Barrer (by 635 %) without scarifying the permeability selectivities of CO2/N2 (16.5 ± 1.5) and CO2/CH4 (31.7 ± 5.8). The results suggest that both the addition of porous UiO-66 nanoparticles and the co-continuous structures contributed to the strongly enhanced gas separation performance of the mixed matrix membranes.