This paper proposes a novel resilient intrusion-tolerance control scheme to solve the consensus control problem of multi-agent systems (MASs) under deception attacks. Consider the state unavailability of MASs with unknown nonlinear terms, the unmeasurable state is estimated by designing the neural-networks(NNs)-based observer. Then, a fully distributed intrusion-tolerant adaptive protocol is developed to implement the consensus control task. The designed control strategy only involves the agent states that interact with the neighboring agent and does not relate to the whole communication topology information. The designed controller can ensure that the consensus error of the nonlinear MASs is eventually ultimately bounded under deception attacks. Finally, a numerical simulation is provided to verify the feasibility of the designed scheme.