Contrasting Marine Environments Research Articles

Multi-year gradient measurements of sea spray fluxes over the Baltic Sea and the North Atlantic Ocean

Abstract. Ship-based measurements of sea spray aerosol (SSA) gradient fluxes in the size range of 0.5–47 µm in diameter were conducted between 2009–2017 in both the Baltic Sea and the North Atlantic Ocean. Measured total SSA fluxes varied between 8.9 × 103 ± 6.8 × 105 m−2 s−1 for the Baltic Sea and 1.0 × 104 ± 105 m−2 s−1 for the Atlantic Ocean. The analysis uncovered a significant decrease (by a factor of 2.2 in the wind speed range of 10.5–14.5 m s−1) in SSA fluxes, with chlorophyll a (chl a) concentration higher than 3.5 mg m−3 in the Baltic Sea area. We found statistically significant correlations for both regions of interest between SSA fluxes and various environmental factors, including wind speed, wind acceleration, wave age, significant wave height, and wave Reynolds number. Our findings indicate that higher chl a concentrations are associated with reduced SSA fluxes at higher wind speeds in the Baltic Sea, while the influence of wave age showed higher aerosol emissions in the Baltic Sea for younger waves compared to the Atlantic Ocean. These insights underscore the complex interplay between biological activity and physical dynamics in regulating SSA emissions. Additionally, in both measurement regions, we observed weak correlations between SSA fluxes and air and water temperature and between SSA fluxes and atmospheric stability. Comparing the Baltic Sea and the North Atlantic, we noted distinct emission behaviors, with higher emissions in the Baltic Sea at low wave age values compared to the Atlantic Ocean. This study represents the first comparative analysis of SSA flux measurements using the same methodology in these contrasting marine environments.

Accumulation of Per- and Polyfluoroalkyl Substances (PFAS) in Coastal Sharks from Contrasting Marine Environments: The New York Bight and The Bahamas.

Per- and polyfluoroalkyl substances (PFAS) enter the marine food web, accumulate in organisms, and potentially have adverse effects on predators and consumers of seafood. However, evaluations of PFAS in meso-to-apex predators, like sharks, are scarce. This study investigated PFAS occurrence in five shark species from two marine ecosystems with contrasting relative human population densities, the New York Bight (NYB) and the coastal waters of The Bahamas archipelago. The total detected PFAS (∑PFAS) concentrations in muscle tissue ranged from 1.10 to 58.5 ng g-1 wet weight, and perfluorocarboxylic acids (PFCAs) were dominant. Fewer PFAS were detected in Caribbean reef sharks (Carcharhinus perezi) from The Bahamas, and concentrations of those detected were, on average, ∼79% lower than in the NYB sharks. In the NYB, ∑PFAS concentrations followed: common thresher (Alopias vulpinus) > shortfin mako (Isurus oxyrinchus) > sandbar (Carcharhinus plumbeus) > smooth dogfish (Mustelus canis). PFAS precursors/intermediates, such as 2H,2H,3H,3H-perfluorodecanoic acid and perfluorooctanesulfonamide, were only detected in the NYB sharks, suggesting higher ambient concentrations and diversity of PFAS sources in this region. Ultralong-chain PFAS (C ≥ 10) were positively correlated with nitrogen isotope values (δ15N) and total mercury in some species. Our results provide some of the first baseline information on PFAS concentrations in shark species from the northwest Atlantic Ocean, and correlations between PFAS, stable isotopes, and mercury further contextualize the drivers of PFAS occurrence.

Omega-3 enriched chick diet reduces the foraging areas of breeders in two closely related shearwaters from contrasting marine environments.

Seabirds have evolved several life-history characteristics to help buffer environmental stochasticity. However, particularly during the breeding season, seabirds may be affected by reductions in prey availability and localised oceanographic conditions caused by variations in the environment. The increase in sea surface temperature, triggered by accelerated global warming, is impairing phytoplankton production of omega-3 fatty acids (FAs). Here, we assessed the ecological role of omega-3 FAs on chick development and subsequently on breeder foraging behaviour in two closely related shearwater species foraging in contrasting marine environments. We supplemented chicks with omega-3 FA pills or with control placebo pills and monitored chick growth, chick health status and breeder at-sea foraging behaviour using global positioning system devices. We found that omega-3 chick supplementation reduced the 95% kernel utilization distribution of short trips of Cape Verde shearwaters, but overall, breeders kept a similar foraging pattern between treatments, potentially influenced by predictable prey patches off the West African coast. In contrast, for Cory's shearwaters, the parents of the omega-3 group greatly reduced the foraging effort. This suggests that the proximity to productive prey patches around the colony may help birds to adjust their effort and, therefore, energy expenditure, to changes in the development of their offspring, as driven by their nutritional status. Overall, our results suggest a link between a chick diet enriched in omega-3 FAs and parental foraging effort, providing insight into their ability to cope with a changing and increasingly stochastic marine environment.

A Metagenomic and Amplicon Sequencing Combined Approach Reveals the Best Primers to Study Marine Aerobic Anoxygenic Phototrophs

Studies based on protein-coding genes are essential to describe the diversity within bacterial functional groups. In the case of aerobic anoxygenic phototrophic (AAP) bacteria, the pufM gene has been established as the genetic marker for this particular functional group, although available primers are known to have amplification biases. We review here the existing primers for pufM gene amplification, design new ones, and evaluate their phylogenetic coverage. We then use samples from contrasting marine environments to evaluate their performance. By comparing the taxonomic composition of communities retrieved with metagenomics and with different amplicon approaches, we show that the commonly used PCR primers are biased towards the Gammaproteobacteria phylum and some Alphaproteobacteria clades. The metagenomic approach, as well as the use of other combinations of the existing and newly designed primers, show that these groups are in fact less abundant than previously observed, and that a great proportion of pufM sequences are affiliated to uncultured representatives, particularly in the open ocean. Altogether, the framework developed here becomes a better alternative for future studies based on the pufM gene and, additionally, serves as a reference for primer evaluation of other functional genes.

Comparison of sedimentary iron speciation obtained by sequential extraction and X-ray absorption spectroscopy

Iron (Fe) speciation in marine sediments and suspended particulate matter (SPM) are widely used to investigate the role of Fe minerals in marine biogeochemical cycling and to reconstruct paleo-redox conditions. A traditional method for the determination of Fe speciation are sequential extractions, in which operationally defined Fe pools are dissolved by specific extraction solutions. More recently, many studies make use of synchrotron radiation-based X-ray absorption near edge spectroscopy (XANES), especially if little sample material is available or a high spatial resolution is required. However, few studies have systematically compared Fe speciation obtained by the two methods. Here, we report Fe speciation for marine sediments (both wet and freeze-dried) and SPM from contrasting marine environments (western Baltic Sea and Amazon shelf) obtained by sequential extraction and XANES. The two methods yield comparable results regarding the approximate proportion of reactive Fe ((oxyhydr)oxide, carbonate and sulfide minerals) in the total Fe pool and the extent to which reactive Fe minerals have been converted to pyrite. However, methodological issues associated with both approaches complicate a direct comparison of specific mineral groups. Pyrite concentrations obtained by XANES are lower than those obtained by extraction, which is attributed to an underestimation by XANES due to self-absorption effects and an overestimation by the chromium reduction method due to dissolution of reduced sulfur phases that are not associated with Fe. As substantial amounts of pyrite are oxidized during freeze-drying and sample storage, we recommend to analyze wet sediments in modern marine environments. The XANES spectra of Fe (oxyhydr)oxide and Fe(III)-containing (ferric) clay minerals are similar, which is why these components cannot be differentiated by XANES. Similarly, sequential extraction schemes are known to dissolve a variable proportion of ferric clay minerals along with Fe carbonates and Fe (oxyhydr)oxides. Further investigating the role of ferric clay minerals in the low-temperature marine Fe cycle may therefore require the use of additional methods. Our findings may help to assess the transferability of XANES-based Fe speciation for small sediment and SPM samples to those reported in more traditional studies on Fe biogeochemical cycling and paleo-redox conditions.

Environmental forcing on zooplankton distribution in the coastal waters of the Galápagos Islands: spatial and seasonal patterns in the copepod community structure

The oceanographic setting of the Galápagos Archipelago results in a spatially diverse marine environment suitable for a variety of species with different climatic requirements. The goal of this study is to demonstrate that the community of zooplankton in the Galápagos is highly structured by regional differences in productivity patterns and advective sources. Results are mostly based on biodiversity patterns of the copepod community collected over the Galápagos shelf between 2004 and 2006. Two contrasting marine environments were observed: a nutrient-rich upwelling system with a shallow mixed layer and a diatom-dominated phytoplankton community in the west, and a non-upwelling system with a deeper mixed layer, lower surface nutrient concentrations, and a phytoplankton community dominated by small cells in the east. These conditions drive spatial structuring of zooplankton that varies seasonally, with 3 distinct copepod communities separated geographically in western, central, and southeastern regions. The western upwelling region has a high-abundance and low-diversity community, whereas the non-upwelling eastern region has a lower-abundance and higher-diversity community. The eastern community is further differentiated into central and southeastern regions, the former with tropical species advected from the north, the latter with temperate species advected from the south. During the warm season, when the equatorial front moves south, species typical of the central region spread southwest across the archipelago. This is the first taxonomically comprehensive list of copepod species for the Galápagos Islands. A total of 164 copepod species are identified, including 22 species previously unreported from the Eastern Tropical Pacific.

Disentangling the structure and function of mycoplankton communities in the context of marine environmental heterogeneity

Mycoplankton are a diverse and ubiquitous component of marine environments with a suggested role in ocean biogeochemical cycling. Thus far, the patterns of their abundance, structure, and function against spatial environmental heterogeneity remains poorly understood. Based on in silico and experimental evaluation of multiple markers, we adopted the ITS1 region to determine the composition, guilds, and metabolic potential of mycoplankton communities in contrasting marine environments. The trophic status of estuarine (SB1 and SB2) and coastal (DB1 and DB2) sites, but not oceanic (OS) site, was the major factor that determined their abundances. While ascomycetous fungi dominated the estuarine and coastal sites, basidiomycetous fungi were found to dominate the oceanic site. The zoosporic fungi were relatively more abundant in SB1 and DB2 sites compared to the other sites. The relative abundances of the core fungi, namely Cystobasidium, Phlebia, Rhodotorula, Trichoderma, Alternaria, Penicillium, Malassezia, and Aspergillus varied widely across the sites. Additionally, several fungal genera unique to each site were also identified. DB2 site exhibited the lowest fungal richness while the OS site the highest. Conversely, the diversity and evenness were the lowest for the OS site but highest for the SB1 site. Temperature, pH, and chlorophyll-a were strongly associated with spatial diversity patterns. Of the 11 assigned guilds, some guilds particularly were not detected, including plant pathogen-wood saprotroph in DB2, the endophyte-plant pathogen in OS, the animal pathogen in SB1, and fungal parasite in DB1 and SB2. Within core functions—metabolism of amino acids, carbohydrates and energy, fatty acids and lipids, nitrogen, sulfur, and other compounds—several pathways showed spatial variations. Overall, this study not just broadens the taxonomic and metabolic repertoire of marine mycoplankton but also provides the first evidence of how these are shaped by site-scale environmental heterogeneity.

Ocean warming is the key filter for successful colonization of the migrant octocoral Melithaea erythraea (Ehrenberg, 1834) in the Eastern Mediterranean Sea.

Climate, which sets broad limits for migrating species, is considered a key filter to species migration between contrasting marine environments. The Southeast Mediterranean Sea (SEMS) is one of the regions where ocean temperatures are rising the fastest under recent climate change. Also, it is the most vulnerable marine region to species introductions. Here, we explore the factors which enabled the colonization of the endemic Red Sea octocoral Melithaea erythraea (Ehrenberg, 1834) along the SEMS coast, using sclerite oxygen and carbon stable isotope composition (δ18OSC and δ13CSC), morphology, and crystallography. The unique conditions presented by the SEMS include a greater temperature range (∼15 °C) and ultra-oligotrophy, and these are reflected by the lower δ13CSCvalues. This is indicative of a larger metabolic carbon intake during calcification, as well as an increase in crystal size, a decrease of octocoral wart density and thickness of the migrating octocoral sclerites compared to the Red Sea samples. This suggests increased stress conditions, affecting sclerite deposition of the SEMS migrating octocoral. The δ18Osc range of the migrating M. erythraea indicates a preference for warm water sclerite deposition, similar to the native depositional temperature range of 21–28 °C. These findings are associated with the observed increase of minimum temperatures in winter for this region, at a rate of 0.35 ± 0.27 °C decade−1 over the last 30 years, and thus the region is becoming more hospitable to the Indo-Pacific M. erythraea. This study shows a clear case study of “tropicalization” of the Mediterranean Sea due to recent warming.

The role of mixing in controlling resource availability and phytoplankton community composition

We investigate the role of mixing, through its effect on nutrient and light availability, as a driver of phytoplankton community composition in the context of Margalef’s mandala. Data on microstructure turbulence, irradiance, new nitrogen supply and phytoplankton composition were collected at 102 stations in three contrasting marine environments: the Galician coastal upwelling system of the northwest Iberian Peninsula, the northwestern Mediterranean, and the tropical and subtropical Atlantic, Pacific and Indian oceans. Photosynthetic pigments concentration and microscopic analysis allowed us to investigate the contribution of diatoms, dinoflagellates, pico- and nanoeukaryotes, and cyanobacteria to the phytoplankton community. Simple linear regression was used to assess the role of environmental factors on community composition, and environmental overlap among different phytoplankton groups was computed using nonparametric kernel density functions. Mixing and new nitrogen supply played an important role in controlling the phytoplankton community structure. At lower values of mixing and new nitrogen supply cyanobacteria dominated, pico- and nanoeukaryotes were dominant across a wide range of environmental conditions, and finally enhanced new nitrogen supply was favourable for diatoms and dinoflagellates. Dinoflagellates were prevalent at intermediate mixing levels, whereas diatoms spread across a wider range of mixing conditions. Occasional instances of enhanced diatom biomass were found under low mixing, associated with the high abundance of Hemiaulus hauckii co-occurring with high N2 fixation in subtropical regions, and with the formation of thin layers in the Galician coastal upwelling. Our results verify the Margalef’s mandala for the whole phytoplankton community, emphasizing the need to consider nutrient supply, rather than nutrient concentration, as an indicator of nutrient availability.

Delineation of ecologically distinct units of marine Bacteroidetes in the Northwestern Mediterranean Sea.

Bacteroidetes is one of the dominant phyla of ocean bacterioplankton, yet its diversity and population structure is poorly understood. To advance in the delineation of ecologically meaningful units within this group, we constructed near full-length 16S rRNA gene clone libraries from contrasting marine environments in the NW Mediterranean. Based on phylogeny and the associated ecological variables (depth and season), 24 different Bacteroidetes clades were delineated. By considering their relative abundance (from iTag amplicon sequencing studies), we described the distribution patterns of each of these clades, delimiting them as Ecologically Significant Taxonomic Units (ESTUs). Spatially, there was almost no overlap among ESTUs at different depths. In deep waters there was predominance of Owenweeksia, Leeuwenhoekiella, Muricauda-related genera, and some depth-associated ESTUs within the NS5 and NS2b marine clades. Seasonally, multi-annual dynamics of recurring ESTUs were present with dominance of some ESTUs within the NS4, NS5 and NS2b marine clades along most of the year, but with variable relative frequencies between months. A drastic change towards the predominance of Formosa-related ESTUs and one ESTU from the NS5 marine clade was typically present after the spring bloom. Even though there are no isolates available for these ESTUs to determine their physiology, correlation analyses identified the environmental preference of some of them. Overall, our results suggest that there is a high degree of niche specialisation within these closely related clades. This work constitutes a step forward in disentangling the ecology of marine Bacteroidetes, which are essential players in organic matter processing in the oceans.

Foraging ecology of tropicbirds breeding in two contrasting marine environments in the tropical Atlantic

Foraging ecology of tropicbirds breeding in two contrasting marine environments in the tropical Atlantic

Factors controlling the community structure of picoplankton in contrasting marine environments

Abstract. The effect of inorganic nutrients on planktonic assemblages has traditionally relied on concentrations rather than estimates of nutrient supply. We combined a novel dataset of hydrographic properties, turbulent mixing, nutrient concentration, and picoplankton community composition with the aims of (i) quantifying the role of temperature, light, and nitrate fluxes as factors controlling the distribution of autotrophic and heterotrophic picoplankton subgroups, as determined by flow cytometry, and (ii) describing the ecological niches of the various components of the picoplankton community. Data were collected at 97 stations in the Atlantic Ocean, including tropical and subtropical open-ocean waters, the northwestern Mediterranean Sea, and the Galician coastal upwelling system of the northwest Iberian Peninsula. A generalized additive model (GAM) approach was used to predict depth-integrated biomass of each picoplankton subgroup based on three niche predictors: sea surface temperature, averaged daily surface irradiance, and the transport of nitrate into the euphotic zone, through both diffusion and advection. In addition, niche overlap among different picoplankton subgroups was computed using nonparametric kernel density functions. Temperature and nitrate supply were more relevant than light in predicting the biomass of most picoplankton subgroups, except for Prochlorococcus and low-nucleic-acid (LNA) prokaryotes, for which irradiance also played a significant role. Nitrate supply was the only factor that allowed the distinction among the ecological niches of all autotrophic and heterotrophic picoplankton subgroups. Prochlorococcus and LNA prokaryotes were more abundant in warmer waters (>20 ∘C) where the nitrate fluxes were low, whereas Synechococcus and high-nucleic-acid (HNA) prokaryotes prevailed mainly in cooler environments characterized by intermediate or high levels of nitrate supply. Finally, the niche of picoeukaryotes was defined by low temperatures and high nitrate supply. These results support the key role of nitrate supply, as it not only promotes the growth of large phytoplankton, but it also controls the structure of marine picoplankton communities.

Interspecific variation in the physiological and reproductive parameters of porcelain crabs from the Southeastern Pacific coast: potential adaptation in contrasting marine environments

Porcelain crabs inhabit from upper intertidal to subtidal habitats. These environments are characterized by highly variable environmental conditions, which subject species found in these habitats to stress. In this study, we compared reproductive traits of mothers [i.e. fecundity, reproductive output (RO), dry weight, organic matter] and physiological parameters of their offspring (i.e. wet weight, water content, dry weight, organic matter, lactate content of embryos) of three species of porcelain crabs that inhabit the Southeastern Pacific: Petrolisthes laevigatus (upper intertidal); P. violaceus (low intertidal); Allopetrolisthes punctatus (subtidal). Overall, female P. laevigatus had lower fecundity (802 ± 115 vs. 4181 ± 1097 embryos) and amount of organic matter in their embryo masses (0.053 ± 0.006 vs. 0.27 ± 0.025 g) but higher RO values (1.34 ± 0.34 vs. 0.20 ± 0.07) than Allopetrolisthes punctatus. In addition, P. laevigatus embryos had higher organic matter content (81.09 ± 28.8 vs. 64.54 ± 6.1 μg), higher water content (188.6 ± 91.9 vs. 152.4 ± 30.8 μL) and higher lactate content (0.26 ± 0.04% vs. 0.07 ± 0.01% dry weight) than that found in A. punctatus embryos. Furthermore, females and embryos of P. violaceus showed low values and similar to those observed in P. laevigatus. As a potential strategy to increase survival of the offspring, P. laevigatus seems to invest a large portion of its energy in production of high quality embryos, despite costs to fecundity. This study reveals that porcelain crabs have physiological adaptations during their ontogeny that allow them to survive in fluctuating environments.

Habitat selection of foraging chick-rearing European shags in contrasting marine environments

Impacts of anthropogenic activities on coastal seabirds might be extensive, especially in the breeding season. Identifying important foraging areas and associated habitats is important for a proper management of seabirds. To identify habitat characteristics driving the selection of foraging sites of breeding European shags Phalacrocorax aristotelis, this study used tracking data (GPS- and TDR-loggers), from 282 individual birds comprising 905 foraging trips and 27,303 dives with known locations, to create habitat selection models. To explore possible effects of regional differences in habitat on foraging behavior, the study was performed at two Norwegian colonies, Sklinna in the Norwegian Sea (65°N, 11°E) and Hornoya in the Barents Sea (70°N, 31°E), with distinct differences in seascape structure and habitat availability. Shags at Sklinna foraged further away from the colony than those at Hornoya but diving depth and duration were similar at the two colonies. In both colonies, sea depth was an important predictor of habitats selected by chick-rearing shags during foraging, with birds preferring shallow depths. At Sklinna, shags also selected for flat areas with high probability of kelp forest occurrence. There was no difference in trip length and duration between sexes, but males dived deeper than females in both colonies. This suggests that males and females might utilize different microhabitats within the same foraging area. The study discusses the application of habitat selection modeling to identify important foraging areas for coastal seabirds, and how this may contribute to the management, conservation and assessment of impacts of human activities.

Sediment characteristics and benthic ecological status in contrasting marine environments of subtropical Hong Kong

Sediment characteristics and benthic communities on a finer sampling scale in four contrasting environments in subtropical Hong Kong were analyzed in summer and winter 2012. In two harbour habitats which suffered from historic sewage pollution or hypoxic events, organic carbon, nutrient and trace metal content in the sediment were significantly higher than that in an offshore area and a marine reserve. The relatively low organic and nutrient content in the offshore habitat could be resulted from enhanced resuspension of such materials from the seabed owing to intense water mixing and disturbance caused by bottom trawling. The biotic indices AMBI and M-AMBI were shown to be useful in assessing the benthic ecological status of these habitats. Such indices can also be more sensitive than sediment physico-chemical parameters in differentiating the response of macrofauna to seasonal changes in the benthic environment.

Evaluation of Tangential Flow Filtration for the Concentration and Separation of Bacteria and Viruses in Contrasting Marine Environments.

Tangential flow filtration (TFF), which has been widely adopted to concentrate a diverse array of microbes from water, is a promising method of microbial separation or removal. However, it is essential to select an optimal membrane suitable for the specific filtration application. This study evaluated two different scales of TFF systems for concentrating and separating microbes (including bacteria and viruses) from contrasting marine waters. Among bacteria-size membranes, polyvinylidene difluoride (PVDF) membranes showed higher bacterial recovery, but lower viral permeation efficiencies than polyethersulfone (PES) membranes, regardless of environments and scales of TFF. Estuary samples showed significantly higher percentages of bacterial retention than nearshore and ocean samples. For virus-size membranes, a higher viral recovery and lower sorption was observed for regenerated cellulose membrane than PES membranes in the small-scale TFF. Similar viral recoveries were observed between PES membranes in the large-scale TFF, with higher viral concentrations being observed in estuary samples than in nearshore samples. Deep ocean samples showed the lowest recovery of viruses, which was consistent with observations of bacterial recovery. Synthetically, PVDF may be more suitable for the concentration of bacterial cells, while PES would be a better choice for the collection of viruses. When compared with the PES membrane, regenerated cellulose is better for viral concentration, while PES is recommended to obtain bacteria- and virus-free seawater.

Differential response of microbial plankton to nutrient inputs in oligotrophic versus mesotrophic waters of the North Atlantic

The effects of inorganic and/or organic (glucose+AAs) inputs on phytoplankton and heterotrophic bacteria were assessed, using a microcosm approach, in two contrasting marine environments: an open ocean oligotrophic site (North Atlantic Subtropical Gyre) and a highly productive coastal embayment (Ría de Vigo, NW Spain). Overall, changes in microbial plankton biomass were smaller than those of metabolic rates. The largest increases in primary production, bacterial production and community respiration were measured in response to mixed () nutrient additions in both sites. Primary production responded to additions only in oligotrophic waters. The distinct autotrophic responses to nutrient additions measured in these environments were related to the different initial composition of phytoplankton populations and, presumably, also to differences in grazing pressures in both marine ecosystems. Heterotrophic bacteria were limited by organic substrates in both ecosystems, although mixed additions further enhanced bacterial growth in the subtropical gyre. The differences detected in bacterial responses to nutrient additions may be related to differences in nutrient limitations and to the prevalence of different relationships between components of the microbial food web (e.g. coupling between heterotrophic bacteria and phytoplankton and predation pressure) in both environments. We found a more relevant role of inorganic nutrients in controlling the efficiency of bacterial growth in oligotrophic regions as compared with highly productive systems. Our results suggest that organic matter inputs into both ecosystems might result in a tendency towards heterotrophy and in increases in bacterial growth efficiency.

Molecular signatures of lineage‐specific adaptive evolution in a unique sea basin: the example of an anadromous goby Leucopsarion petersii

Climate changes on various time scales often shape genetic novelty and adaptive variation in many biotas. We explored molecular signatures of directional selection in populations of the ice goby Leucopsarion petersii inhabiting a unique sea basin, the Sea of Japan, where a wide variety of environments existed in the Pleistocene in relation to shifts in sea level by repeated glaciations. This species consisted of two historically allopatric lineages, the Japan Sea (JS) and Pacific Ocean (PO) lineages, and these have lived under contrasting marine environments that are expected to have imposed different selection regimes caused by past climatic and current oceanographic factors. We applied a limited genome-scan approach using seven candidate genes for phenotypic differences between two lineages in combination with 100 anonymous microsatellite loci. Neuropeptide Y (NPY) gene, which is an important regulator of food intake and potent orexigenic agent, and three anonymous microsatellites were identified as robust outliers, that is, candidate loci potentially under directional selection, by multiple divergence- and diversity-based outlier tests in comparisons focused on multiple populations of the JS vs. PO lineages. For these outlier loci, populations of the JS lineage had putative signals of selective sweeps. Additionally, real-time quantitative PCR analysis using fish reared in a common environment showed a higher expression level for NPY gene in the JS lineage. Thus, this study succeeded in identifying candidate genomic regions under selection across populations of the JS lineage and provided evidence for lineage-specific adaptive evolution in this unique sea basin.

Bacterial uptake of low molecular weight organics in the subtropical Atlantic: Are major phylogenetic groups functionally different?

We present measurements of glucose, amino acids, and adenosine triphosphate (ATP) bacterial uptake at tracer concentrations across an oceanic gradient from the Cape Blanc upwelling to the Northeast Atlantic subtropical gyre. The bulk uptake of the compounds increased in the upwelling, with amino acids being the most actively taken up substrate (up to 20 pmol L−1 h−1). The single‐cell activity of the bacterial groups also increased in the upwelling, particularly for Rhodobacteraceae (up to 94% of active cells), but this group had low activity in oligotrophic waters (< 10% of active cells), which suggests it is exclusively adapted to high‐nutrient conditions. The percentage of SAR11 active cells was relatively high in the upwelling area, particularly for glucose and amino acid uptake (up to 53% of active cells), which suggests that some members of this group are also adapted to nutrient‐rich environments. Of the broad phylogenetic groups tested, Bacteroidetes were the least active and Alpha‐ and Gammaproteobacteria showed similar percentages of active cells in amino acid uptake (∼ 30%). Alphaproteobacteria had the highest percent of cells involved in glucose uptake, while Gammaproteobacteria dominated ATP uptake. This general pattern was confirmed in a broader analysis that included data from contrasting marine environments, which suggests that major phylogenetic groups of bacteria participate differently in the turnover of these low‐molecular‐weight organics. Our results support the view that broad phylogenetic groups can be identified within the bacterial ‘black box’ with different patterns in the cycling of organic matter. Analyzing them may help us understand, and ultimately predict, oceanic carbon processing.

Geographic and seasonal variability in the isotopic niche of little auks

The non-breeding season of seabirds is extremely challenging to study because it is often spent offshore under harsh environmental conditions. We used stable isotope analysis to investigate little auk Alle alle feeding ecology throughout the annual cycle. The geographic distribution of little auks in the Arctic covers a wide range of oceanographic conditions. We sampled birds from 5 different colonies located in the most important breeding areas (Greenland and Spitsbergen) to examine how individuals breeding in contrasting marine environments differ in their trophic niche throughout the year. We found differences in summer δ15N values among the colonies, suggesting different target species despite low overall δ15N values in blood, which indicates a diet that is primarily composed of copepods. A rise in δ15N values between summer and autumn indicated that adults changed their trophic status to feed at a higher trophic level. During autumn, a large overlap in feather δ13C values between colonies suggests a common moulting area off Northeast Greenland. During winter, the isotopic signatures show that the trophic status of Greenland and Spitsbergen birds differed, with birds from Greenland feeding at low trophic levels (probably mostly on copepods), and birds from Spitsbergen maintaining a higher trophic level. These findings highlight contrasting seasonal and regional diet in little auk populations, and reveal possible population overlaps during the autumn moult. We found substantial trophic variability in little auks, which may indicate unsuspected capabilities to adapt to current, drastic environmental change in the North Atlantic.