Contrasting Life History Strategies Research Articles

Quantifying the role of iron recycling by Adélie and Emperor penguins over the austral spring and summer in Prydz Bay

In large areas of the Southern Ocean, iron limits phytoplankton production. Although biologically mediated iron recycling has been studied for the higher trophic-level whales and the lower trophic-level krill, less is known of the numerically abundant seabirds foraging in Antarctic waters. In this study, we estimate the magnitude of iron recycled by two Antarctic breeding seabirds, the Adélie and emperor penguins, across the austral spring and summer in the Prydz Bay region, East Antarctica. Their contribution to iron recycling and associated pathways differs in line with their contrasting life history strategies (summer and winter breeding) and their breeding habitat (land and fast ice). We consider their breeding cycle in relation to their terrestrial activities compared to foraging periods at sea. High iron concentration (~419 mg kg−1) in guano of both penguin species suggests that they are a source of regenerated iron. Breeding emperor penguins supplied an average of 237 μmol iron m−2 day−1 on the fast ice that they breed on that eventually ends in the ocean when the ice melts completely in summer (November–February). During their foraging trips, the adult emperor penguins contribute between 7 × 10−5 and 4 × 10−4 μmol iron m−2 day−1, as their foraging ranges increase over the breeding season. In contrast, breeding Adélie penguins supplied between 254 and 1,243 μmol iron m−2 day−1 whilst at their colony, with a fraction of guano entering the ocean via meltwater flowing into the ocean. The flux decreases to 2 × 10−3 to 6 × 10−2 μmol iron m−2 d−1, whilst they are foraging. Our study finds that penguins redistribute a large flux of iron onto their colonies, which may enter the adjacent water through sea ice melt and facilitated through katabatic winds. Despite their high abundance in Prydz Bay, the contribution of penguins to iron flux during their foraging periods is minor, due to the enormous foraging range being covered. Further research into the bioavailability of iron by marine organisms coupled with parallel measurements of seawater iron concentration and phytoplankton uptake experiments will be invaluable in refining iron budgets in both this region and other hotspots along the Antarctic coast where higher trophic-level animals are abundant.

Contrasting intra-individual variation in size-based trophic and habitat shifts for two coastal Arctic fish species

Within and among species variation in trophic and habitat shifts with body size can indicate the potential adaptive capacity of species to ecosystem change. In Arctic coastal ecosystems, which experience dramatic seasonal shifts and are undergoing rapid change, quantifying the trophic flexibility of coastal fishes with different migratory tactics has received limited attention. We examined the relationships among body length and condition (Fulton’s K, phase angle from Bioelectrical Impedance Analysis) with trophic and habitat shifts (differences in δ15N and δ13C between blood tissues with different turnover rates) of two abundant and culturally important species, anadromous Arctic char (Salvelinus alpinus, n = 38) and sedentary Greenland cod (Gadus ogac, n = 65) during summer in coastal marine waters near Ulukhaktok, Northwest Territories, Canada. Habitat shifts (δ13C) increased with length (i.e., pelagic to benthic-littoral) and crossed-equilibrium (zero) at mid-sizes for both species. Seasonal trophic shifts (δ15N) were generally positive (i.e., increasing trophic level) for Arctic char and negative for Greenland cod. As hypothesised, intra-individual variation in size-based trophic shifts (δ15N-length residuals) increased with length for Arctic char. However, there were no trends with length in Greenland cod. Our findings highlight the importance of flexibility through ontogeny and mobility for Arctic char, whereas Greenland cod were generalist to localized prey and habitat across all sizes. The significant effect of body condition (phase angle) on size-based trophic shifts in Arctic char, and size-based habitat shifts in Greenland cod, highlight the potential trade-offs of contrasting life history strategies and capacity for ontogenetic niche plasticity.

Contrasting life cycles of Southern Ocean pteropods alter their vulnerability to climate change

Pteropods are a key part of biogeochemical cycling and epipelagic food webs in the Southern Ocean. However, shelled pteropods are vulnerable to climate change, due to their aragonite shells being particularly sensitive to ocean acidification. Currently our understanding of pteropod responses to environmental change is hindered by uncertainties surrounding their life cycles and population dynamics. In this study, we describe polar shelled pteropod diversity in the north-eastern Scotia Sea, inferring life history and population structures of the dominant pteropod species,Limacina rangii(formerlyLimacina helicina antarctica) andLimacina retroversa. An annual timeseries ofLimacinashell morphometrics was derived from individuals collected in a moored sediment trap at 400 m depth. We found thatL. rangiiandL. retroversahave contrasting life history strategies.L. rangiihas a continuous spawning and recruitment period from November to March and can overwinter as juveniles and adults.L. retroversahas discrete spawning events from November to May, producing non–overlapping cohorts of juveniles and adults. Their development to the adult stage takes between two and five months, upon which they overwinter as adults. Our findings suggest different vulnerabilities ofL. rangiiandL. retroversato a changing ocean. For example, since all life stages ofL. rangiico-exist, vulnerability of one cohort is not detrimental to the stability of the overall population whereas, if oneL. retroversacohort fails to recruit, the entire population is threatened. Changes in pteropod populations could have cascading ramifications to Antarctic ecosystems and carbon cycling.

Coral reef fish communities of natural habitats and man-made coastal structures in Bora-Bora (French Polynesia)

Coastal habitats have long been recognised to be nurseries and growing grounds for many marine organisms. Worldwide, coastal hardening and urbanisation are leading to the removal of natural ecosystems. The tropical island of Bora-Bora in the South Pacific has undergone extensive coastal changes, with the construction of seawalls along more than half of its coastline since the 1950s. The daytime and night-time juvenile and adult fish communities were surveyed with multiple temporal replicates on a range of lagoon and coastal habitats on Bora-Bora. Over 47% of all fish on coastal habitats were juveniles. Mangroves, traditionally viewed as nurseries, had a high daytime and night-time abundance of juveniles, but less than 1% of the coastline of Bora-Bora consists of mangroves. The manmade seawalls, which are the most common type of coastal habitat on the island, were associated with lower juvenile densities during the day and promoted the presence of predators. The comparison of coastal and lagoon sites also highlighted contrasting life history strategies depending on coral reef fish species: although many favour coastal habitats as juveniles, others do not undergo ontogenetic shifts and thus other habitats must be considered when designing management plans to protect juvenile fish. Overall, our surveys show the importance of natural coastal zones in the lifecycle of numerous coral reef fish species in the lagoon of Bora-Bora and highlight the potential long-term impacts of coastal hardening on fish communities.

Population genetics reveals divergent lineages and ongoing hybridization in a declining migratory fish species complex.

Deciphering the effects of historical and recent demographic processes responsible for the spatial patterns of genetic diversity and structure is a key objective in evolutionary and conservation biology. Using population genetic analyses, we investigated the demographic history, the contemporary genetic diversity and structure, and the occurrence of hybridization and introgression of two species of anadromous fish with contrasting life history strategies and which have undergone recent demographic declines, the allis shad (Alosa alosa) and the twaite shad (Alosa fallax). We genotyped 706 individuals from 20 rivers and 5 sites at sea in Southern Europe at thirteen microsatellite markers. Genetic structure between populations was lower for the nearly semelparous species A. alosa, which disperses greater distances compared to the iteroparous species, A. fallax. Individuals caught at sea were assigned at the river level for A. fallax and at the region level for A. alosa. Using an approximate Bayesian computation framework, we inferred that the most likely long term historical divergence scenario between both species and lineages involved historical separation followed by secondary contact accompanied by strong population size decline. Accordingly, we found evidence for contemporary hybridization and bidirectional introgression due to gene flow between both species and lineages. Moreover, our results support the existence of at least one distinct species in the Mediterrannean sea: A. agone in Golfe du Lion area, and another divergent lineage in Corsica. Overall, our results shed light on the interplay between historical and recent demographic processes and life history strategies in shaping population genetic diversity and structure of closely related species. The recent demographic decline of these species' populations and their hybridization should be carefully considered while implementing conservation programs.

Temperature-dependent effects on fecundity in a serial broadcast spawning fish after whole-life high CO2 exposure

AbstractExperiments examining fish sensitivities to future oceanic CO2 levels have greatly expanded over past decades and identified many potentially affected traits. Curiously, data on reproductive trait responses to high CO2 are still scarce, despite their strong link to Darwinian fitness and thus to population vulnerability to ocean acidification. We conducted two rearing experiments on the first broadcast-spawning marine fish model (Atlantic silverside, Menidia menidia) to examine how long-term and novel whole life-cycle exposures to predicted future CO2 levels (∼2,000 µatm) affect laboratory spawning, temperature-specific reproductive investment, fecundity, and size distributions of maturing oocytes. At low temperatures (17°C), female body size and therefore potential fecundity (FPot, oocytes/female) slightly increased with CO2, while relative fecundity (FRel, oocytes/g female) remained unaffected. At high temperatures (24°C), high CO2 substantially reduced both FPot (−19%) and FRel (−28%) relative to control treatments. Irrespective of CO2, females at 24°C grew larger and heavier than those at 17°C, and although larger females produced larger oocytes at some developmental stages, they also had lower gonadosomatic indices and lower FRel. Our findings contrast with most previous studies and thus highlight the need to investigate reproductive impacts of increasing CO2 on multiple fish species with contrasting life history strategies.

Does life history mediate discharge as a driver of multi-decadal changes in populations of freshwater fish?

Understanding how and why the size of populations varies is critical knowledge for conservation and management. While considerable work has explored how different demographic parameters affect population growth, less is known the drivers of variability in these parameters. Long-term time series tracking population size that are coupled with empirical data to examine the relative importance of different drivers are rare, especially in freshwater systems. Even rarer are studies that collect this information concurrently from multiple species with contrasting life history strategies in the same system to assess whether population size and the relative importance of drivers also vary. We studied changes in the abundance and size structure of four native freshwater fish species in the Murray River, southeastern Australia, over a continuous 19-yr period. Two species with traits typical of "equilibrium" species (Murray cod Maccullochella peelii and trout cod Maccullochella macquariensis) and two with traits of "periodic" species (golden perch Macquaria ambigua and silver perch Bidyanus bidyanus) were sampled annually and capture-mark-recapture modeling was used to ask (1) how did population size change during this period, (2) how were changes in population size related to variability in hydrology, and (3) how were changes in population size driven by different processes (local recruitment or migration events)? Populations of all four species varied throughout the study, and our results are consistent with the notion that local recruitment is an important driver of this variability for Murray cod and trout cod, whereas immigration is more important for the two other species. Increases in spring river discharge strongly influenced these responses for trout cod and golden perch. Our study provides fundamental insights into the population dynamics of these valued species, and how management strategies might differ based on their life histories. Management should focus on allowing connectivity for golden and silver perch, and on promoting local scale recruitment and survival for Murray cod and trout cod. More generally, our study highlights the importance of understanding the processes underpinning population persistence, how these processes may vary for different species, and ultimately how this knowledge can inform targeted management actions.

Gene body DNA methylation in seagrasses: inter- and intraspecific differences and interaction with transcriptome plasticity under heat stress

The role of DNA methylation and its interaction with gene expression and transcriptome plasticity is poorly understood, and current insight comes mainly from studies in very few model plant species. Here, we study gene body DNA methylation (gbM) and gene expression patterns in ecotypes from contrasting thermal environments of two marine plants with contrasting life history strategies in order to explore the potential role epigenetic mechanisms could play in gene plasticity and responsiveness to heat stress. In silico transcriptome analysis of CpGO/E ratios suggested that the bulk of Posidonia oceanica and Cymodocea nodosa genes possess high levels of intragenic methylation. We also observed a correlation between gbM and gene expression flexibility: genes with low DNA methylation tend to show flexible gene expression and plasticity under changing conditions. Furthermore, the empirical determination of global DNA methylation (5-mC) showed patterns of intra and inter-specific divergence that suggests a link between methylation level and the plants’ latitude of origin and life history. Although we cannot discern whether gbM regulates gene expression or vice versa, or if other molecular mechanisms play a role in facilitating transcriptome responsiveness, our findings point to the existence of a relationship between gene responsiveness and gbM patterns in marine plants.

Contrasting effects of Symbiodinium identity on coral host transcriptional profiles across latitudes.

Reef-building corals can increase their resistance to heat-induced bleaching through adaptation and acclimatization and/or by associating with a more thermo-tolerant strain of algal symbiont (Symbiodinium sp.). Here, we show that these two adaptive pathways interact. We collected Acropora millepora corals from two contrasting thermal environments on the Great Barrier Reef: cooler, mid-latitude Orpheus Island, where all corals hosted a heat-sensitive clade C Symbiodinium, and warmer, low-latitude Wilkie Island, where corals hosted either a clade C or a more thermo-tolerant clade D. Corals were kept in a benign common garden to reveal differences in baseline gene expression, reflecting prior adaptation/long-term acclimatization. Model-based analysis identified gene expression differences between Wilkie and Orpheus corals that were negatively correlated with previously described transcriptome-wide signatures of heat stress, signifying generally elevated thermotolerance of Wilkie corals. Yet, model-free analyses of gene expression revealed that Wilkie corals hosting clade C were distinct from Wilkie corals hosting clade D, whereas Orpheus corals were more variable. Wilkie corals hosting clade C symbionts exhibited unique functional signatures, including downregulation of histone proteins and ion channels and upregulation of chaperones and RNA processing genes, putatively representing constitutive "frontloading" of stress response genes. Furthermore, clade C Symbiodinium exhibited constitutive expression differences between Wilkie and Orpheus, indicative of contrasting life history strategies. Our results demonstrate that hosting alternative Symbiodinium types is associated with different pathways of local adaptation for the coral host. These interactions could play a significant role in setting the direction of genetic adaptation to global warming in the two symbiotic partners.

Consequences of habitat fragmentation on the reproductive success of two Tillandsia species with contrasting life history strategies.

Fragmentation of natural habitats generally has negative effects on the reproductive success of many plant species; however, little is known about epiphytic plants. We assessed the impact of forest fragmentation on plant–pollinator interactions and female reproductive success in two epiphytic Tillandsia species with contrasting life history strategies (polycarpic and monocarpic) in Chamela, Jalisco, Mexico, over three consecutive years. Hummingbirds were the major pollinators of both species and pollinator visitation rates were similar between habitat conditions. In contrast, the composition and frequency of floral visitors significantly varied between habitat conditions in polycarpic and self-incompatible T. intermedia but not in monocarpic self-compatible T. makoyana. There were no differences between continuous and fragmented habitats in fruit set in either species, but T. makoyana had a lower seed set in fragmented than in continuous forests. In contrast, T. intermedia had similar seed set in both forest conditions. These results indicate that pollinators were effective under both fragmented and continuous habitats, possibly because the major pollinators are hummingbird species capable of moving across open spaces and human-modified habitats. However, the lower seed set of T. makoyana under fragmented conditions suggests that the amount and quality of pollen deposited onto stigmas may differ between habitat conditions. Alternatively, changes in resource availability may also cause reductions in seed production in fragmented habitats. This study adds to the limited information on the effects of habitat fragmentation on the reproductive success of epiphytic plants, showing that even related congeneric species may exhibit different responses to human disturbance. Plant reproductive systems, along with changes in pollinator communities associated with habitat fragmentation, may have yet undocumented consequences on gene flow, levels of inbreeding and progeny quality of dry forest tillandsias.

Spatial structure of large‐river fish populations across main‐stem and tributary habitats

AbstractThe spatial variability in demographic parameters represents fundamental information for conservation and management of large‐river fish populations. We assessed demographic processes including survival and movement across macroscale habitats in a large‐river network using 2 candidate large‐river species with contrasting life history strategies. We used mark–recapture data and a multistate model framework to estimate survival and transition probabilities between main‐stem and tributary habitats for both channel catfish and shovelnose sturgeon. Annual survival for channel catfish was similar in main‐stem and tributary habitats (range in S = 0.47–0.58). Annual survival for shovelnose sturgeon was less in the tributary (S = 0.68) compared with the main stem (S = 0.83). The probability of movement among macroscale habitats differed between species. However, the greatest probability of movement occurred from the tributary to the main‐stem for both channel catfish (ψ = 0.42) and shovelnose sturgeon (ψ = 0.27). Movement between main‐stem and tributary rivers may be a prominent characteristic for both channel catfish and shovelnose sturgeon and could influence population demographic rates and abundance across systems. Riverine fish populations are likely structured across multiple salient scales—including tributary and main‐stem habitats. Consideration of connectivity across tributary and main‐stem habitats with respect to species' life history strategy and life stage may better integrate a systems' perspective for conservation and management of large‐river fish populations.

Sex-specific responses of bud burst and early development to nongrowing season warming and drought in Populus cathayana

Bud burst is one of the most observable phenological stages in tree species, and its responses to environmental factors are found to be species-specific. Nevertheless, for dioecious plants, whether the bud burst responses are sex specific remains an open question, as do the underlying physiological mechanisms. Here, we investigated the effect of elevated temperature (+2 °C) and drought (30% field capacity) during December–March on bud development, gas exchange, water and nitrogen status, and carbohydrate metabolism in female and male Populus cathayana to understand how nongrowing season warming and drought modifies physiological and phenological traits. Our results showed that at ambient temperature, males experienced earlier bud burst than females. Winter warming significantly delayed bud burst and even synchronized it for both sexes because of the greater responsiveness of males. Although drought exerted little effect on the timing of bud burst, it significantly reduced bud fresh mass and limited bud growth by decreasing gas exchange capacity and nonstructural carbohydrate (NSC) accumulation; moreover, females were more affected by drought stress. The significant sex × watering × temperature interactions for δ13C and NSC indicate that sexual dimorphism in these condition-specific traits would increase along the environmental gradients, implying contrasting life history strategies in different ecological scenarios. The convergence in the time for bud burst caused by elevated temperature might exaggerate the competition among males, thus influencing the sex ratio, structure, and functioning of P. cathayana populations.

Habitat specialization explains avian persistence in tidal marshes

AbstractHabitat specialists are declining at alarming rates worldwide, driving biodiversity loss of the earth's next mass extinction. Specialist organisms maintain smaller functional niches than their generalist counterparts, and tradeoffs exist between these contrasting life history strategies, creating conservation challenges for specialist taxa. There is little work, however, explicitly quantifying “specialization”; such information is necessary for the development of focused conservation strategies in light of the rapidly changing landscapes of the modern world. In this study, we tested whether habitat specialism explains the persistence of breeding bird populations in tidal marshes of the northeastern United States. We used the North American Breeding Bird Survey (BBS) together with contemporary marsh bird surveys to develop a Marsh Specialization Index (MSI) for 106 bird species that regularly use tidal marshes during the breeding season. We produced four metrics of species persistence (occupancy, abundance, total biomass supported, and 14‐yr population trends) and compared them to MSI values in one of the first community‐scale demonstrations of specialist loss in disturbed landscapes. Our results confirm that tidal marsh specialism has short‐term benefits but long‐term consequences for bird persistence in coastal marsh systems, results that are generalizable across many changing landscapes. We then use this robust support of niche theory to recommend MSI as a tool for quantitatively identifying species of conservation concern in disturbed and rapidly changing landscapes such as tidal marsh.

Influence of host diet and phylogeny on parasite sharing by fish in a diverse tropical floodplain.

The patterns of parasite sharing among hosts have important implications for ecosystem structure and functioning, and are influenced by several ecological and evolutionary factors associated with both hosts and parasites. Here we evaluated the influence of fish diet and phylogenetic relatedness on the pattern of infection by parasites with contrasting life history strategies in a freshwater ecosystem of key ecological importance in South America. The studied network of interactions included 52 fish species, which consumed 58 food types and were infected with 303 parasite taxa. Our results show that both diet and evolutionary history of hosts significantly explained parasite sharing; phylogenetically close fish species and/or species sharing food types tend to share more parasites. However, the effect of diet was observed only for endoparasites in contrast to ectoparasites. These results are consistent with the different life history strategies and selective pressures imposed on these groups: endoparasites are in general acquired via ingestion by their intermediate hosts, whereas ectoparasites actively seek and attach to the gills, body surface or nostrils of its sole host, thus not depending directly on its feeding habits.

Population dynamics of the squids Dosidicus gigas (Oegopsida: Ommastrephidae) and Doryteuthis gahi (Myopsida: Loliginidae) in northern Peru

Pelagic squids of continental shelf ecosystems mostly include oceanic and migratory species of the family Ommastrephidae and neritic species of the family Loliginidae. These two families have contrasting life history strategies; ommastrephids spawn in the open ocean and are thought to have a high dispersal potential, while loliginids spawn on the bottom and are likely to have a low dispersal potential. Consequently, these squid species should display different patterns in their population dynamics, which can be inferred through commercial catches. To study the population dynamics of the Ommastrephidae and the Loliginidae families, monthly time series catches of Dosidicus gigas and Doryteuthis gahi were used. These artisanal fishery catches were made in northern Peru from 1999 to 2010. They were standardized to construct autocorrelation functions so that the relationship between catch dynamics and short-term environmental change (thermal anomalies of sea surface temperature were used as a proxy) could be studied. The results revealed that increases in catches of D. gigas and D. gahi are not related to thermal anomalies, but rather a pattern of drastic fluctuations in D. gahi catch sizes are seen. In, both species, temporal relationships indicate that the annual growth rate and changes in abundance can modelled as a function of the catch density observed in previous years. We propose that these population differences result from the contrasting life history strategies and differential habitat use of these two squid species.

Comparing effective population sizes of dominant marine alphaproteobacteria lineages

A fundamental question in marine microbial ecology is how microbes adapt to ocean environments. Although numerically dominant populations are typically considered more successful, higher census population sizes (Nc) do not equate directly to a greater capability for adaptation. Instead, effective population size (Ne) determines the fate of deleterious and favourable mutations, and thus is a key parameter for determining the adaptive potential of a population. In the case of the SAR11 and Roseobacter lineages, two abundant heterotrophic bacteria in ocean surface waters with contrasting life history strategies, culture-independent population surveys suggest that SAR11s have greater Nc than Roseobacters. To determine relative Ne, we compared the ratio of nonsynonymous to synonymous substitution rates (ω) of recently diverged lineages of these taxa. Values of ω associated with several of the Roseobacter subclades were lower than for SAR11 subclades, suggesting greater Ne in these cases. Most Roseobacter lineages also had smaller ω values compared with an atypical basal Roseobacter lineage with a large Nc. This finding provides insight into variability in Ne across two important marine bacterial lineages, and provides an evolutionary context for considering how heterotrophic marine bacteria may differ in their ability to adapt to changing ocean habitats.

Patterns of Deep-Sea Genetic Connectivity in the New Zealand Region: Implications for Management of Benthic Ecosystems

Patterns of genetic connectivity are increasingly considered in the design of marine protected areas (MPAs) in both shallow and deep water. In the New Zealand Exclusive Economic Zone (EEZ), deep-sea communities at upper bathyal depths (<2000 m) are vulnerable to anthropogenic disturbance from fishing and potential mining operations. Currently, patterns of genetic connectivity among deep-sea populations throughout New Zealand’s EEZ are not well understood. Using the mitochondrial Cytochrome Oxidase I and 16S rRNA genes as genetic markers, this study aimed to elucidate patterns of genetic connectivity among populations of two common benthic invertebrates with contrasting life history strategies. Populations of the squat lobster Munida gracilis and the polychaete Hyalinoecia longibranchiata were sampled from continental slope, seamount, and offshore rise habitats on the Chatham Rise, Hikurangi Margin, and Challenger Plateau. For the polychaete, significant population structure was detected among distinct populations on the Chatham Rise, the Hikurangi Margin, and the Challenger Plateau. Significant genetic differences existed between slope and seamount populations on the Hikurangi Margin, as did evidence of population differentiation between the northeast and southwest parts of the Chatham Rise. In contrast, no significant population structure was detected across the study area for the squat lobster. Patterns of genetic connectivity in Hyalinoecia longibranchiata are likely influenced by a number of factors including current regimes that operate on varying spatial and temporal scales to produce potential barriers to dispersal. The striking difference in population structure between species can be attributed to differences in life history strategies. The results of this study are discussed in the context of existing conservation areas that are intended to manage anthropogenic threats to deep-sea benthic communities in the New Zealand region.

Can Soil Seed Banks Serve as Genetic Memory? A Study of Three Species with Contrasting Life History Strategies

We attempted to confirm that seed banks can be viewed as an important genetic reservoir by testing the hypothesis that standing (aboveground) plants represent a nonrandom sample of the seed bank. We sampled multilocus allozyme genotypes from three species with different life history strategies: Amaranthus retroflexus, Carduus acanthoides, Pastinaca sativa. In four populations of each species we analysed the extent to which allele and genotype frequencies vary in consecutive life history stages including the summer seed bank, which has been overlooked up to now. We compared the winter seed bank (i.e., seeds collected before the spring germination peak), seedlings, rosettes, the summer seed bank (i.e., seeds collected after the spring germination peak) and fruiting plants. We found that: (1) All three species partitioned most of their genetic diversity within life history stages and less among stages within populations and among populations. (2) All genetic diversity parameters, except for allele frequencies, were similar among all life history stages across all populations in different species. (3) There were differences in allele frequencies among life history stages at all localities in Amaranthus retroflexus and at three localities in both Carduus acanthoides and Pastinaca sativa. (4) Allele frequencies did not differ between the winter and summer seed bank in most Carduus acanthoides and Pastinaca sativa populations, but there was a marked difference in Amaranthus retroflexus. In conclusion, we have shown that the summer seed bank is not genetically depleted by spring germination and that a majority of genetic diversity remains in the soil through summer. We suggest that seed banks in the species investigated play an important role by maintaining genetic diversity sufficient for recovery rather than by accumulating new genetic diversity at each locality.

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

Scleractinian corals harbor microorganisms that form dynamic associations with the coral host and exhibit substantial genetic and ecological diversity. Microbial associates may provide defense against pathogens and serve as bioindicators of changing environmental conditions. Here we describe the bacterial assemblages associated with two of the most common and phylogenetically divergent reef-building corals in the Caribbean, Montastraea faveolata and Porites astreoides. Contrasting life history strategies and disease susceptibilities indicate potential differences in their microbiota and immune function that may in part drive changes in the composition of coral reef communities. The ribotype structure and diversity of coral-associated bacteria within the surface mucosal layer (SML) of healthy corals were assessed using denaturing gradient gel electrophoresis (DGGE) fingerprinting and 454 bar-coded pyrosequencing. Corals were sampled at disparate Caribbean locations representing various levels of anthropogenic impact. We demonstrate here that M. faveolata and P. astreoides harbor distinct, host-specific bacteria but that specificity varies by species and site. P. astreoides generally hosts a bacterial assemblage of low diversity that is largely dominated by one bacterial genus, Endozoicomonas, within the order Oceanospirillales. The bacterial assemblages associated with M. faveolata are significantly more diverse and exhibit higher specificity at the family level than P. astreoides assemblages. Both corals have more bacterial diversity and higher abundances of disease-related bacteria at sites closer to the mainland than at those furthest away. The most diverse bacterial taxa and highest relative abundance of disease-associated bacteria were seen for corals near St. Thomas, U.S. Virgin Islands (USVI) (2.5 km from shore), and the least diverse taxa and lowest relative abundance were seen for corals near our most pristine site in Belize (20 km from shore). We conclude that the two coral species studied harbor distinct bacterial assemblages within the SML, but the degree to which each species maintains specific microbial associations varies both within each site and across large spatial scales. The taxonomic scale (i.e., phylum versus genus) at which scientists examine coral-microbe associations, in addition to host-elicited factors and environmental fluctuations, must be considered carefully in future studies of the coral holobiont.

Plant and soil responses to defoliation: a comparative study of grass species with contrasting life history strategies

The overall aim of this study was to test for inter-species variation in plant and soil responses to defoliation among a broad range of temperate grass species and life-history strategies. We used a microcosm experiment where a range of grass species differing in life history traits were subjected to different intensities of defoliation, and a range of aboveground and belowground plant and soil responses were measured. All plant attributes, including accumulated shoot biomass, root biomass and root length, showed a strong negative response to defoliation, although plant species exhibited subtle differences in the way that they responded to increased severity of defoliation. Defoliation also exerted a strong influence on soil properties, decreasing soil microbial carbon (C) and the soil microbial C:nitrogen (N) ratio, and increasing inorganic N availability and potential N mineralisation across all species. Despite the wide range in life history strategies, plant species did not differ in their influence on most of the soil variables, except for the rate of nitrate mineralisation, which was lowest under plant species that displayed the least relative detrimental responses to defoliation. Collectively, our results suggest that plant and soil responses to defoliation are reasonably consistent across a broad range of grass species, with only subtle inter-specific differences among species.