Conservation Questions Research Articles

Global patterns of the species richness and distribution of eriophyoid mites: a response to Li et al. 2023

AbstractAimThe global distribution and diversity of mites, including the species rich and highly host plant‐specific eriophyoid mites, are important questions in biogeography and biodiversity conservation. Here we critique the paper of Li et al. (2023) titled ‘Global patterns and drivers of herbivorous eriophyoid mite species diversity’.LocationGlobalTaxonEriophyoid mites (Acari: Eriophyoidea)MethodsWe assert that the data set utilized (less than 4,500 eriophyoid species) consisted of only the described extant species, not all extant species. We then provide evidence that the utilised data set represents only a small proportion of the likely global total of eriophyoid species and therefore provides a far from complete representation of their global distribution.ResultsMost collections of extant eriophyoid mites have been conducted in temperate regions where most taxonomic specialists have been active, and not in the largely unstudied tropical regions which contain a very substantial majority of all plant diversity. Most undescribed eriophyoid diversity is therefore highly likely to be found in the tropics. This suggests that the global modelling analyses of Li et al. (2023) were very likely applied to a highly inaccurate data set.Main ConclusionsThe actual global distribution and total number of eriophyoid mite species can only be more reliably estimated by systematic taxonomic studies that cover the entire global distribution of plant diversity, which implies a strong focus on the tropical regions.

An instructional workflow for using terrestrial laser scanning (TLS) to quantify vegetation structure for wildlife studies

Vegetation structure is a crucial component of habitat suitability for wildlife, but methods traditionally used to quantify it can be costly, subjective, or difficult to replicate. There have been substantial advancements, and growing interest, in the use of terrestrial laser scanning (TLS) methods to measure fine-scale vegetation attributes in ecological research, but limited opportunities for ecologists and practitioners to learn how to incorporate these into applied research. Here, we provide a starting point for those who want to incorporate TLS methods into ecological research and monitoring, using a case study from a temperate forest in South-Eastern Australia. We scanned 24 sites at different stages of post-fire recovery as part of a larger project measuring the impact of fire on forest dwelling bats, using a FARO Focus 3DS. Using the data from these scans, we present an example workflow with accompanying R code to demonstrate how to process the point clouds and extract a range of vegetation structure metrics relevant to habitat structure for wildlife, including vegetation height, cover, density, and heterogeneity. We discuss how three-dimensional data obtained through TLS can be valuable to wildlife studies and opens up the potential to explore advanced ecological and conservation questions around how vegetation structure influences wildlife behaviours, distribution patterns, and responses to disturbance.

Tick‐tock… says the moon and the sun: Daily activity patterns of mid‐large‐sized mammals in grassland‐dominated landscapes afforested withEucalyptus

AbstractSpecies can change their activity patterns in response to biotic and abiotic factors, such as sunlight and moonlight. The influence of these variables is a key question for ecological research and biodiversity conservation. The conversion of natural grasslands into tree plantations has reached high levels in temperate South America. These novel ecosystems elicit behavioural changes that can be detrimental or beneficial to wildlife. In this research, we describe the activity patterns of mammals (mid and large‐sized) during sun and lunar phases using camera trap data (2015–2021; 22 926 camera/nights) to assess the effects of the season (warm and cold), habitat type (native forests, grasslands,Eucalyptusplantations) and landscape afforestation degree (10%–90%) in eight landscape samples (5 km radius) at Uruguayan grasslands. This represents the first study of temporal patterns in grassland afforestation worldwide, and concerning solar time and lunar patterns in Uruguay. Across 257 camera trap stations, 5297 independent detections of 13 species were recorded. While there were no significant differences among seasons nor through a landscape gradient of afforestation cover, the local habitat type affected most species temporal niches, finding significant differences between native ecosystems andEucalyptusplantations, despite their close spatial proximity. Cathemeral and nocturnal activity patterns were seen for 12 species, and nine showed lunarphobic or lunarphilic trends according to habitat cover. In tree plantations, five of seven species narrowed their temporal activity compared to native habitats, and four changed their nocturnal activity. These alterations showed that several species adjust their daily activity patterns according to sun and moon phases underEucalyptusplantations, probably reacting to changes in predation risk, hunting pressure, or foraging opportunities. Given that afforestation is projected to grow in southern South America, we must improve our understanding of how species adjust their activities in such novel ecosystems to identify measures needed to increase their conservation opportunities.

Decline or shifting distribution? A first regional trend assessment for white sharks (Carcharodon carcharias) in South Africa

Unprecedented levels of change in ocean ecosystems bring an ever-increasing need for re-analyses of existing data to explore pressing conservation questions. Substantial declines in white shark (Carcharodon carcharias) presence at two primary aggregation sites have raised concerns about the species’ status throughout South Africa. Using the most comprehensive suite of abundance indices compiled to date, we evaluated temporal trends and the strength of evidence for regional redistribution. Individual indices from all primary aggregation sites in South Africa were highly variable. The overall temporal trend from a log-linear Generalized Additive Model was relatively flat, indicating largely unchanged abundance throughout South Africa since protection in 1991. However, reports of human-shark incidents showed a general shift from the Western to the Eastern Cape. Correlations among individual abundance indices demonstrated that movements were not as simple as animals leaving one site to inhabit another. Further research is needed to explore the effect of movement on monitoring data. Our results reaffirm the need for better standardization in data collection methods to generate abundance indices and to develop long-term monitoring programs on the Eastern Cape. Ideally, environmental or operational factors affecting abundance indices should also be explored in future status assessments at a regional level. Our results provide a baseline for future work, directing research to understand drivers of localized and regional changes and focusing management on reducing anthropogenic sources of mortality within their Southwest Indian Ocean range.

Priority research needs to inform amphibian conservation in the Anthropocene

AbstractThe problem of global amphibian declines has prompted extensive research over the last three decades. Initially, the focus was on identifying and characterizing the extent of the problem, but more recently efforts have shifted to evidence‐based research designed to identify best solutions and to improve conservation outcomes. Despite extensive accumulation of knowledge on amphibian declines, there remain knowledge gaps and disconnects between science and action that hamper our ability to advance conservation efforts. Using input from participants at the ninth World Congress of Herpetology, a U.S. Geological Survey Powell Center symposium, amphibian on‐line forums for discussion, the International Union for Conservation of Nature Assisted Reproductive Technologies and Gamete Biobanking group, and respondents to a survey, we developed a list of 25 priority research questions for amphibian conservation at this stage of the Anthropocene. We identified amphibian conservation research priorities while accounting for expected tradeoffs in geographic scope, costs, and the taxonomic breadth of research needs. We aimed to solicit views from individuals rather than organizations while acknowledging inequities in participation. Emerging research priorities (i.e., those under‐represented in recently published amphibian conservation literature) were identified, and included the effects of climate change, community‐level (rather than single species‐level) drivers of declines, methodological improvements for research and monitoring, genomics, and effects of land‐use change. Improved inclusion of under‐represented members of the amphibian conservation community was also identified as a priority. These research needs represent critical knowledge gaps for amphibian conservation although filling these gaps may not be necessary for many conservation actions.

Pioneer tree species accelerate restoration of tree‐related microhabitats in 50‐year‐old reserves of Białowieża Forest, Poland

AbstractRetention of structural elements such as deadwood and habitat trees at the level of forest stands has been promoted to integrate biodiversity conservation into multiple‐use forest management. The conservation value of habitat trees is largely determined by the presence, richness, and abundance of tree‐related microhabitats (TreMs). Since TreMs are often lacking in intensively managed forests, an important question of forest conservation is how the abundance and richness of TreMs may be effectively restored. Here, we investigated whether the strict protection of forest through cessation of timber harvesting influenced TreM occurrence at tree and stand levels. For that purpose, we compared four managed and four set‐aside stands (0.25 ha each) in the Białowieża Forest, with identical origin following clear‐cuts approximately 100 years ago. We found that the abundance and richness of TreMs on living trees were not significantly different between stands that were either conventionally managed or where active forest management ceased 52 years ago. Yet, our analysis of TreMs on tree species with contrasting life‐history traits revealed that short‐lived, fast‐growing species (pioneers) developed TreMs quicker than longer‐lived, slower‐growing species. Hence, tree species such as Populus or Betula, which supply abundant and diverse TreMs, can play an important role in accelerating habitat restoration.

The clustering of spatially associated species unravels patterns in tropical tree species distributions

AbstractComplex distribution data can be summarized by grouping species with similar or overlapping distributions to unravel spatial patterns and separate trends (e.g., of habitat loss) among spatially unique groups. However, such classifications are often heuristic, lacking the transparency, objectivity, and data‐driven rigor of quantitative methods, which limits their interpretability and utility. Here, we develop and illustrate the clustering of spatially associated species, a methodological framework aimed at statistically classifying species using explicit measures of interspecific spatial association. We investigate several association indices and clustering algorithms and show how these methodological choices drive substantial variations in clustering outcomes and performance. To facilitate robust decision‐making, we provide guidance on choosing methods appropriate to one's study objective(s). As a case study, we apply our framework to modeled tree distributions in Borneo and subsequently evaluate the impact of land‐cover change on separate species groupings. Based on the modeled distribution of 390 tree species prior to anthropogenic land‐cover changes, we identified 11 distinct clusters that unraveled ecologically meaningful patterns in Bornean tree distributions. These clusters then enabled us to quantify trends of habitat loss tied to each of those specific clusters, allowing us to discern particularly vulnerable species clusters and their distributions. This study demonstrates the advantages of adopting quantitatively derived clusters of spatially associated species and elucidates the potential of resultant clusters as a spatially explicit framework for investigating distribution‐related questions in ecology, biogeography, and conservation. By adopting our methodological framework and publicly available codes, practitioners can leverage the ever‐growing abundance of distribution data to better understand complex spatial patterns among species distributions and the disparate effects of global changes on biodiversity.

Turning observations into biodiversity data: Broadscale spatial biases in community science

AbstractBiodiversity community science projects are growing rapidly in popularity. The enormous amounts of data generated by these programs are transforming how we conduct ecological research and conservation management. However, as with other biodiversity surveys, community science datasets suffer from biases in time and locations of observations. To better use these data, we modeled the spatial biases present in the popular community science platform, iNaturalist. iNaturalist uses crowdsourcing to collect georeferenced and time‐stamped observations of all taxa worldwide. With its wealth of biodiversity data, iNaturalist is now being used to answer a broad range of questions in ecology and conservation, but little is known about the platform's spatial biases. We focus on the more than 1.75 million iNaturalist observations available (as of December 2021) from British Columbia, Canada, a region with a strong community science presence and diversity of ecosystems. Using machine learning and species distribution modeling, we examined which landscape factors (e.g., protected areas, roads, human population density, habitat zones, elevation) were most important in determining where observations are taken, and we created a predicted probability map revealing how likely different regions are to be sampled by community scientists. We found strong road biases for observations in iNaturalist, with over 94% of observations within 1 km of roads. In addition, human population density and broad habitat ecosystem zones played a large role in predicting where iNaturalist observations occur across the landscape. These methods demonstrate tools for modeling the effects of spatial biases in large opportunistic datasets that can then be used to produce more accurate species distribution and biodiversity models from community science data.

Reference genome for the American rubyspot damselfly, Hetaerina americana.

Damselflies and dragonflies (Order: Odonata) play important roles in both aquatic and terrestrial food webs and can serve as sentinels of ecosystem health and predictors of population trends in other taxa. The habitat requirements and limited dispersal of lotic damselflies make them especially sensitive to habitat loss and fragmentation. As such, landscape genomic studies of these taxa can help focus conservation efforts on watersheds with high levels of genetic diversity, local adaptation, and even cryptic endemism. Here, as part of the California Conservation Genomics Project (CCGP), we report the first reference genome for the American rubyspot damselfly, Hetaerina americana, a species associated with springs, streams and rivers throughout California. Following the CCGP assembly pipeline, we produced two de novo genome assemblies. The primary assembly includes 1,630,044,487 base pairs, with a contig N50 of 5.4 Mb, a scaffold N50 of 86.2 Mb, and a BUSCO completeness score of 97.6%. This is the seventh Odonata genome to be made publicly available and the first for the subfamily Hetaerininae. This reference genome fills an important phylogenetic gap in our understanding of Odonata genome evolution, and provides a genomic resource for a host of interesting ecological, evolutionary, and conservation questions for which the rubyspot damselfly genus Hetaerina is an important model system.

RWCVP: a companion R package for the World Checklist of Vascular Plants.

The World Checklist of Vascular Plants (WCVP) is an extremely valuable resource that is being used to address many fundamental and applied questions in plant science, conservation, ecology and evolution. However, databases of this size require data manipulation skills that pose a barrier to many potential users. Here, we present rWCVP, an open-source R package that aims to facilitate the use of the WCVP by providing clear, intuitive functions to execute many common tasks. These functions include taxonomic name reconciliation, geospatial integration, mapping and generation of multiple different summaries of the WCVP in both data and report format. We have included extensive documentation and tutorials, providing step-by-step guides that are accessible even to users with minimal programming experience. rWCVP is available on cran and GitHub.

Distribution of orchids in the upper basin of the Ural River and questions of nature conservation

Aim. Conduct a botanical and geographical analysis of the species of the fam. Orchidaceae in the upper part of the Ural River basin and provide recommendations on the organization of specially protected natural areas.Material and Methods. The study of the distribution of orchids was carried out both on the basis of the results of our own field expeditions and on literature and herbarium collections stored in local and central herbaria (UFA, SWER, LE, MW). The coenopopulation studies were carried out in accordance with generally accepted methods.Results. The species composition of orchids was revealed and their arealogical, ecological-coenotic, coenopopulation analysis was undertaken in the upper part of the Ural River basin. Despite the wide range, most species of the fam. Orchidaceae are characterised by a narrow ecological-coenotic confinement. The low occurrence of orchids in the conditions of the steppe and forest-steppe zones of the territories under consideration is associated with both weather-climatic and anthropogenic impacts. The coenopopulations of most species are small and the ontogenetic spectra are incomplete.Conclusions. Species of the family Orchidaceae do not grow in economically developed territories. The remaining locations of orchids are mainly associated with landscapes that are difficult to access for anthropogenic impact. In order to preserve the steppe and forest-steppe landscapes of the Urals it is necessary to further develop the system of specially protected natural areas. The most promising for this purpose are the Krykty and Irendyk ranges, which are distinguished by their unique landscape and biological diversity.

From river to ocean: Connectivity and heterogeneity of aquatic ecosystems depicted by planktonic microeukaryotes

Understanding how the diverse habitats incubated a high diverse biosphere is a core question for biodiversity conservation. Community assembly of organisms in connected but different habitats could provide insight into this issue. As an important group of plankton, microeukaryotes are widely distributed in aquatic habitats and are sensible to ecological conditions. However, how the distribution of planktonic microeukaryotes from river to ocean are shaped by habitat connectivity and heterogeneity remains unclear. In order to assess the connectivity and heterogeneity of aquatic habitats, environmental DNA sequencing was used to profile the planktonic microeukaryotic communities in typical habitats throughout the major rivers, estuaries, coastal waters, and ocean of China, covering a geographic distance of 3530 km. The hypothesized “freshwater species pool (FSP)” and “marine species pool (MSP)” of planktonic microeukaryotes were confirmed by their significant dissimilarities in community composition. The planktonic microeukaryotic communities completed turnover of FSP-pattern and MSP-pattern within salinity range of 5–15 in estuaries of the river-to-ocean continuum. In this scale covering fresh and salty waters, the community assembly of planktonic microeukaryotes was driven primarily by habitat filtering rather than salinity nor geographic distance. Four types of habitat, i.e., river, estuary, tidal zone, and ocean, were outlined by their planktonic microeukaryotic communities, which depicted the habitat heterogeneity in this continuum. As to the constructive species in these habitats, 98.1 % of them were shared between at least two types of habitat and 41.3 % of them shared among all habitats. These shared constructive species depicted the habitat connectivity of aquatic ecosystems from river to ocean. The findings suggest that the assessment of planktonic microorganism assemblages is a potential approach to indicate habitat diversity in connected aquatic ecosystems.

Minimizing Data Waste: Conservation in the Big Data Era

Minimizing Data Waste: Conservation in the Big Data Era

Does scale or method matter for conservation? Application of directional and omnidirectional connectivity models in spatial prioritizations

IntroductionThe maintenance of habitat connections between fragmented habitat patches is vital for the conservation of wildlife populations and ecosystem functioning. The awareness of connectivity issues for species conservation has resulted in a growth of connectivity modeling and the application of these results in conservation planning. Such connectivity modeling efforts can include several decisions or data limitations, which could influence the connectivity results and ultimately a systematic conservation plan (SCP). However, there has been little investigation of how these different decisions on species, scale, and extent influence the ultimate conservation planning outcomes.MethodsWe modeled the connectivity of northern bobwhite (Colinus virginianus), North American river otter (Lontra canadensis), and black bear (Ursus americanus), three species with varying ecological requirements, through the Congaree Biosphere Region, South Carolina, USA. We modeled habitat suitability for each species using boosted regression trees and converted these results into resistance layers for the connectivity analyses. We compared models for each species at multistate regional and local extents using directional and omnidirectional circuit theory approaches. We then used the results from each modeling combination as conservation goals for three different SCPs to determine how connectivity modeling decisions may influence geographic conservation decisions.ResultsThere was substantial positive spatial correlation between the three connectivity models of each species, and there appeared to be general agreement among mammals as to most important primary corridors. Across all species, the greatest agreement was between the omnidirectional and local directional models as compared with the regional directional plan, which highlighted a unique corridor. The omnidirectional conservation plan required the least amount of planning units to achieve its conservation goals, followed by the local and then regional directional plans that required over 200 km2more land area to be conserved.DiscussionOur results indicate that overall variations in connectivity modeling decisions may have only a moderate impact on the identification of important movement corridors for conservation at the local scale. Practitioners should base modeling decisions on the ecology of the study region, conservation question, and available computing resource.

Can a present-day thermal niche be preserved in a warming climate by a shift in phenology? A case study with sea turtles.

How species respond to climate change may impact their extinction probability. Here we link climatology and ecology to tackle a globally important conservation question. For sea turtles, there are concerns that climate warming will cause both the feminization of populations as well as reduced hatchling survival. For 58 nesting sites across the world spanning all seven sea turtle species, we investigated whether warming might be avoided by shifts in nesting phenology to a cooler part of the year. We show that even with the most extreme phenological shift that has been reported to date-an 18-day advance in nesting per °C increase in sea surface temperature (SST)-temperatures will continue to increase at nesting sites with climate warming. We estimate that SST at nesting sites will rise by an average of 0.6°C (standard deviation = 0.9°C, n = 58) when we model a 1.5°C rise in SST combined with a best-case-scenario shift in nesting. Since sea turtles exhibit temperature-dependent sex determination, these temperature rises could lead to increasingly female-biased sex ratios as well as reduced hatchling production at sites across the world. These findings underscore concerns for the long-term survival of this iconic group.

Warming drives poleward range contractions of Beringian endemic plant species at high latitudes

AbstractAimSpecies are expected to disperse poleward in response to climate change. For species that are endemic to the high latitudes, this implies that many in the future would face a “no‐where‐to‐go” situation as they are currently occupying the northernmost portion of the continent. Further, because endemism may arise from a combination of physical barriers, climate and geological history, the persistence of many species may require spatial matching of multiple environmental factors within a limited dispersal space. Thus, it is not clear how endemic species might spatially adjust their distributions in response to climate change and whether there are future climate change refugia for these species.LocationNorthwest North America.TaxaPlants.Time PeriodCurrent and the future (2040).MethodsWe used ensemble bioclimatic models to evaluate drivers and directional patterns of future change in the distributions of 66 North American Beringian and amphi‐Beringian species currently occurring in Alaska and the Yukon. We explored the spatial pattern of species richness, losses and climate change refugia across the region.ResultsMore than 80% of the species showed northward shifts in their latitudinal centroids under intermediate warming and are expected to shift their range northward by more than 140 km on average by 2040. Additionally, more than 60% were projected to experience range contractions and up to 20% of the species would have the potential to expand their ranges by more than 100%.Main ConclusionsSuitable habitat for endemic species in northwest North America is expected to decline significantly, especially for species occupying the Arctic tundra. Although the models identified several potential refugia from future climate change, especially at high latitude and elevation, whether the species would be able to colonize new habitats on their own and/or capitalize sufficiently on in situ refugia remains a pertinent conservation question.

The conservation paradox of an introduced population of a threatened species: spadefoot toads in the coastal dunes of the Netherlands

Abstract Species that are threatened in their native range may actually prosper as introduced populations. To investigate how such introduced populations were established involves determining from where within the natural range the founder individuals originated. This can be accomplished through mtDNA barcoding. The common spadefoot toad (Pelobates fuscus) naturally occurs in the south and east of the Netherlands and has shown a rapid decline. Yet, a flourishing introduced population was recently discovered in the coastal dunes in the west of the country. We use mtDNA barcoding to determine the provenance of the introduced population. We sampled both native and introduced populations from the Netherlands and compared our sequences to haplotypes from across the entire distribution range. The mtDNA haplotypes found in the introduced population are distinct from those naturally occurring in the Netherlands and point towards an origin in the Pannonian Basin, on the boundary between Central and Southeastern Europe. Paradoxically, the thriving P. fuscus population in the Dutch coastal dunes should be considered a conservation risk to local biodiversity, even though within the native range in the Netherlands the species is severely threatened. Our study illustrates the complicated conservation questions associated with species that are both native and invasive.

Building an Australian Reference Genome Atlas

Currently, genomics data for living species are stored in public and private repositories online. These repositories remain largely disconnected and only partially findable. The Australian Reference Genome Atlas (ARGA) Project is solving the problem of genomics data obscurity by creating an online platform where life sciences researchers can comprehensively and confidently search for data for taxa relevant to Australian research. At its most basic, ARGA is a tool for aggregating and indexing publicly available genomics (and genetics) data. We aim to improve the experience of discovering and accessing this data by building search functionality, based on features such as phenotypic traits and predicted and observed species distributions, and supporting data packaging and transfer to analysis environments. ARGA will index GenBank (National Institutes of Health (NIH), USA), the European Nucleotide Archive (EMBL-ENA), the database of Bioplatforms Australia, and selected DNA repositories in Australian faunal collections and herbaria. We will integrate these records with the occurrence records and taxonomic framework of the Atlas of Living Australia (ALA) to enrich the data and make it searchable using taxonomy, location, ecological characteristics and selected phenotypic data. The chief aims and outputs for the project are to: create a system to enable contextual metadata about a species to be used as a pointer to a variety of genomic data associated with that species; add functionality to that system to enable additional contextual information groupings, and community curation of these created groupings; create a user-facing web-accessible interface for the system; and devise a mechanism that allows the researchers searching the multiple genomic repositories, via ARGA, to select files for subsequent analysis and export them to other cloud-based analysis infrastructure. create a system to enable contextual metadata about a species to be used as a pointer to a variety of genomic data associated with that species; add functionality to that system to enable additional contextual information groupings, and community curation of these created groupings; create a user-facing web-accessible interface for the system; and devise a mechanism that allows the researchers searching the multiple genomic repositories, via ARGA, to select files for subsequent analysis and export them to other cloud-based analysis infrastructure. Our approach to ARGA incorporates: ingesting species metadata from multiple sequence repositories into a consistent data format using Darwin Core Archive (DwC-A); processing metadata using the Pipelines system developed by the Global Biodiversity Information Facility (GBIF), and as implemented in the ALA and other Living Atlases. indexing metadata using a Solr search engine; and providing a front-end web interface for users to find, select and export sequence files to a number of cloud-based analysis platforms. ingesting species metadata from multiple sequence repositories into a consistent data format using Darwin Core Archive (DwC-A); processing metadata using the Pipelines system developed by the Global Biodiversity Information Facility (GBIF), and as implemented in the ALA and other Living Atlases. indexing metadata using a Solr search engine; and providing a front-end web interface for users to find, select and export sequence files to a number of cloud-based analysis platforms. Here we will present an overview of the ARGA infrastructure and demonstrate an early prototype of the platform. We will show how ARGA can be used to interrogate DNA sequence records for taxa relevant to Australian research questions, realising a vision where genomics-based solutions to biological questions in conservation, ecology, agriculture and biosecurity can be manifested.

Feeding on grains containing pesticide residues is detrimental to offspring development through parental effects in grey partridge

Numerous toxicological studies have shown that ingestion of pesticides can induce physiological stress in breeding birds, with adverse consequences on egg laying parameters and offspring quality through parental effects. However, previous studies do not mimic current levels of pesticide residues in typical landscapes, and they do not consider potential cocktail effects of pesticides as they occur in the wild. Herein, we explored whether realistic pesticide exposure affected reproduction parameters and offspring condition through parental effects in Grey partridge. We fed 24 breeding pairs with either seeds from conventional agriculture crops treated with various pesticides during cropping, or organic grains without pesticide residues as controls. The conventional and organic grain diets mimicked food options potentially encountered by wild birds in the field. The results showed that ingesting low pesticide doses over a long period had consequences on reproduction and offspring quality without altering mortality in parents or chicks. Compared with organic pairs, conventional pairs yielded smaller chicks at hatching that had a lower body mass index at 24 days old. Additionally, these chicks displayed lower haematocrit when body mass index was higher. Therefore, ingestion of conventional grains by parents resulted in chronic exposure to pesticide residues, even at low doses, and this had detrimental consequences on offspring. These results demonstrate a sublethal effect of pesticide residues through parental effects. The consequences of parental exposure on chicks might partly explain the decline in wild Grey partridge populations, which raises questions for avian conservation and demography if current agrosystem approaches are continued.

Is the genomics 'cart' before the restoration ecology 'horse'? Insights from qualitative interviews and trends from the literature.

Harnessing new technologies is vital to achieve global imperatives to restore degraded ecosystems. We explored the potential of genomics as one such tool. We aimed to understand barriers hindering the uptake of genomics, and how to overcome them, via exploratory interviews with leading scholars in both restoration and its sister discipline of conservation-a discipline that has successfully leveraged genomics. We also conducted an examination of research trends to explore some insights that emerged from the interviews, including publication trends that have used genomics to address restoration and conservation questions. Our qualitative findings revealed varied perspectives on harnessing genomics. For example, scholars in restoration without genomics experience felt genomics was over-hyped. Scholars with genomics experience emphatically emphasized the need to proceed cautiously in using genomics in restoration. Both genomics-experienced and less-experienced scholars called for case studies to demonstrate the benefits of genomics in restoration. These qualitative data contrasted with our examination of research trends, which revealed 70 restoration genomics studies, particularly studies using environmental DNA as a monitoring tool. We provide a roadmap to facilitate the uptake of genomics into restoration, to help the restoration sector meet the monumental task of restoring huge areas to biodiverse and functional ecosystems. This article is part of the theme issue 'Ecological complexity and the biosphere: the next 30 years'.