Bolted Flange Plate Moment Connections (BFP) are one of the most practical connections, used as prequalified connections in special steel moment frames. Using three full-scale BFP connections designed according to AISC, this paper has explored the effects of bolt pre-tension levels experimentally under SAC cyclic loading protocol. The bolt pre-tension level has been defined as α coefficient to indicate the pre-tensioning level in three specimens. The bolts of the first specimen were not pre-tensioned, called snug-tightened bolts, and considered as reference connections. The bolt pre-tension levels of the second and third specimens were established in accordance with the minimum and allowable limits of AISC design code and ultimate strength of the bolt, called pre-tensioned and fully pre-tensioned, respectively. The moment capacity, total energy absorption, and strain variation of the bolts have been investigated. Meanwhile, using the ultra-low cycle fatigue failure index obtained from experimental specimens, the capacity of modeled BFP connections in finite elements has been compared with the laboratory samples in terms of failure location and connection capacity. The experimental results revealed that final resistance in BFP connections occurs in the cycle of 7% of the drift angle of SAC protocol loading, and the location of the connection failure is around the farthest hole from the column, which is consistent with the failure results from ultra-low cycle fatigue in finite element modeling for BFP connections. The measure of moment resistance in the pre-tensioned connection (Both connections were minimum pre-tensioned according to the regulation and ultimate strength of the bolt) has increased by about 50% compared to the without pre-tensioned connection. The amount of energy absorption of the pre-tensioned connection with the ultimate strength of the bolt has increased by 176% of the energy absorption capacity of the connection without pre-tensioned and 14% of the energy absorption capacity of the connection with the minimum allowable pre-tensioning of the regulation. The extent of energy absorption in the three connections was equal to 38, 92, and 105 KJ.