Conjugated Chain Length Research Articles

Symmetry-Breaking in Cationic Polymethine Dyes: Part 2. Shape of Electronic Absorption Bands Explained by the Thermal Fluctuations of the Solvent Reaction Field.

The electronic absorption spectra of the symmetric cyanines exhibit dramatic dependence on the conjugated chain length: whereas short-chain homologues are characterized by the narrow and sharp absorption bands of high intensity, the long-chain homologues demonstrate very broad, structureless bands of low intensity. Spectra of the intermediate homologues combine both features. These broad bands are often explained using spontaneous symmetry-breaking and charge localization at one of the termini, and the combination of broad and sharp features was interpreted as coexistence of symmetric and asymmetric species in solution. These explanations were not supported by the first principle simulations until now. Here, we employ a combination of time-dependent density functional theory, a polarizable continuum model, and Franck-Condon (FC) approximation to predict the absorption line shapes for the series of 2-azaazulene and 1-methylpyridine-4-substituted polymethine dyes. To simulate inhomogeneous broadening by the solvent, the molecular structures are optimized in the presence of a finite electric field of various strengths. The calculated FC line shapes, averaged with the Boltzmann weights of different field strengths, reproduce the experimentally observed spectra closely. Although the polarizable continuum model accounts for the equilibrium solvent reaction field at absolute zero, the finite field accounts for the thermal fluctuations in the solvent, which break the symmetry of the solute molecule. This model of inhomogeneous broadening opens the possibility for computational studies of thermochromism. The choice of the global hybrid exchange-correlation functional SOGGA11-X, including 40% of the exact exchange, plays the critical role in the success of our model.

Amplified fluorescence quenching of lucigenin self-assembled inside silica/chitosan nanoparticles by Cl⁻.

Fluorescence sensing of an analyte based on the fluorophore collective effect is a reliable, sensitive sensing approach. Many ultralow targets can be detected on the basis of the high sensitivity and signal amplification of the fluorescence sensing system. However, the complicated synthesis procedures, harsh conditions required to design and control the fluorescence molecular probes and conjugated chain length, and the higher cost of synthesis are still challenges. To address these issues, we developed a simple, rapid, and sensitive collective effect based fluorescence sensing platform. In this sensing platform, the fluorophore unit was self-assembled on the wall of the nanopores of the porous structural silica/chitosan nanoparticles (SCNPs) on the basis of the electrostatic interaction and supermolecular interaction between the fluorophores and SiO(-) groups and chitosan. Since these self-assembled fluorophores are close enough to communicate with each other on the basis of the space confinement effect of the pore size, many fluorophore units could interact with a single analyte and produce an amplified fluorescence sensing ability. Chloride ion, an important anion in biological fluids, and lucigenin, a typical fluorescent dye, were used as a model to confirm the proof-of-concept strategy. Our results showed that, compared to free-state lucigenin in solution, the assembled-state lucigenin in SCNPs presented an about 10-fold increase in its Stern-Volmer constant when the concentration of Cl(-) was lower than 10 mM, and this fluorescence nanosensor was also successfully used to sense the chloride ion in living cells.

Effect of substituents and conjugated chain length on the UV spectra of α,ω‐di‐substituted phenyl polyenes

A series of α,ω‐di‐substituted phenyl polyenes, p‐X–Ph(CH = CH)nPh–p‐Y (n = 1, 2, or 3) were synthesized, and their ultraviolet (UV) absorption maximum wavelength were determined. The correlation between molecular structure and the maximum wavelength energy (wavenumber/cm−1) was carried out. The results show that the maximum wavelength energy of the title compounds is mainly affected by both substituent excited‐state parameters and maximum wavelength energy of the parent molecule. However, the two influence factors are not independent, and the action of substituent is governed by the parent molecular absorption energy. In the case of the compounds containing NO2 or NH2 groups, the influence of interaction of polarity parameters on the maximum wavelength energy must also be considered. In addition, the exploration was also made for the quantifying correlation of UV absorption maximum wavelength energy with the conjugated polarizability potential CPP replacing the parent molecular absorption energy. And the results indicate that the equation with CPP parameters is more accurate and convenient. Copyright © 2013 John Wiley & Sons, Ltd.

Improvement of antioxidative activity of resveratrol by elongating conjugated chain: A DFT theoretical study

Elongation of the conjugated chain of resveratrol has been proved to be an effective strategy to further improve its antioxidative capacity and radical scavenging ability. In this work, quantum chemical calculations based on density functional theory have been employed at B3LYP/6-311G(d,p) level of theory to study the influence of the conjugated chain length on equilibrium geometries and properties of relevant species. Our results show elongation of conjugated chain significantly decreases 4′-OH bond dissociation enthalpy (BDE), ionization potential (IP) and proton affinities (PAs) of phenolate ions in gas phase. In aqueous solution 4′-OH BDE, IP are lower as compared to that in gas phase, for PAs of phenolate ions almost no change is induced, but significant decrease in electron transfer enthalpy (ETE) is presented. These indicate that longer conjugated chain is favorable for the radical scavenging capacity and antioxidative activity. In addition, stable s-cis conformers of long chain reservatrol analogs are found to be more favorable for production of phenoxyl radicals and cation radicals as compared to trans conformers, with concomitant enhancement of the antioxidative activity.

Conductivity and long term stability of polypyrrole poly(styrene-co-methacrylic acid) core–shell particles at different polypyrrole loadings

Conductive core–shell particles were obtained by chemical polymerization of pyrrole over monodisperse poly(styrene-co-methacrylic acid) particles. The surface composition has been studied by elemental analysis, Fourier Transform Infrared Spectroscopy (FTIR), X-ray Photoelectron Spectroscopy (XPS), scanning electron microscopy and transmission electron microscopy techniques. XPS, elemental analysis and FTIR results allowed determining doping level and conjugation length of the polypyrrole (PPy) chain deposited on the latex surface. It is shown that the chain conjugation length, and not the doping level, is the principal factor that influences the conductivity. Samples with low PPy loading have short conjugation length and so low conductivity independently of their doping level. The experimental conductivity decay with time has been analysed following the electron hopping model, from this model the characteristic time (τ) of the conductivity degradation process has been determined.

Electronic Absorption and Ground State Structure of Carotenoid Molecules

Predicting the complete electronic structure of carotenoid molecules remains an extremely complex problem, particularly in anisotropic media such as proteins. In this paper, we address the electronic properties of nine relatively simple carotenoids by the combined use of electronic absorption and resonance Raman spectroscopies. Linear carotenoids exhibit an excellent correlation between (i) the inverse of their conjugation chain length N, (ii) the energy of their S0 → S2 electronic transition, and (iii) the position of their ν1 Raman band (corresponding to the stretching mode of their conjugated C═C bonds). For cyclic carotenoids such as β-carotene, this correlation is also observed between the latter two parameters (S0 → S2 energy and ν1 frequency), whereas their "nominal" conjugation length N does not follow the same relationship. We conclude that β-carotene and cyclic carotenoids in general exhibit a shorter effective conjugation length than that expected from their chemical structure. In addition, the effect of solvent polarizability on these molecular parameters was investigated for four of the carotenoids used in this study. We demonstrate that resonance Raman spectroscopy can discriminate between the different effects underlying shifts in the S0 → S2 transition of carotenoid molecules.

Conformational changes of β-carotene and zeaxanthin immersed in a model membrane through atomistic molecular dynamics simulations

In this work, we investigate systems formed by β-carotene and zeaxanthin embedded separately in a model lipid bilayer of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) through molecular dynamics (MD) simulations. The study is conducted using an all-atoms model and by analyzing the structural changes that occur at both the carotenoid molecule and the membrane during the simulations. We concentrate specifically on the conformation of the conjugated chain, given the relevance that this feature has in modulating the spectroscopic and antioxidant properties of the carotenoids. The force fields of the carotenoids are parametrized accordingly in order to reproduce the rotation potentials of the conjugated chains calculated using quantum DFT methods. A model to quantify the effective conjugated chain length is presented. The MD simulations are carried out using the parameters adjusted for the carotenoids along with those provided by the CHARMM36 force field for the lipids of the membrane. A differentiating dynamic behavior of β-carotene and zeaxanthin within the bilayer is observed in the simulations, which is analyzed in detail through umbrella sampling techniques. This behavior is driven basically by the interactions of the lipid polar heads with the hydroxyl groups of zeaxanthin, which are absent in β-carotene. These interactions influence the carotenoid orientation, modify the conformational distribution of the dihedral angles of the conjugated chain significantly, and specifically distort the membrane structure.

THEORETICAL STUDY OF ONE- AND TWO-PHOTON ABSORPTION PROPERTIES FOR THREE SERIES OF DIPHENYLAMINE AND DIFLUORENYLAMINE SUBSTITUTED CONJUGATED COMPOUNDS

The one-photon (OPA) and two-photon (TPA) absorption properties of three series of symmetrically substituted quadrupolar compounds with structure of donor-π bridge-donor (D–π–D) were investigated by time-dependent density functional theory (TDDFT) based on the Hartree–Fock (HF)-optimized geometrical structures. These compounds were constructed with either phenyl or fluorenyl groups connected by vinylene unit as the central π-conjugated bridges and either diphenylamine or difluorenylamine groups as terminal electron donors. The calculated OPA spectra are dominated by two strong transitions which are attributed to the charge transfers from the donor groups to central conjugated chains. The OPA and TPA transition strength all increase with the extension of conjugated chain length in each series and the corresponding wavelength shifts red in general. The transition strength in either OPA or TPA process also increases from series one to series two or three by replacing the phenyl groups with fluorenyl groups. The intramolecular charge transfers make significant contributions to the TPA activity. According to the three-state model, the enhanced TPA activity comes from the enhancement of transition moment between states–states as conjugated chain increases.

Site-Specific PEGylation of HR2 Peptides: Effects of PEG Conjugation Position and Chain Length on HIV-1 Membrane Fusion Inhibition and Proteolytic Degradation

Peptides derived from the HR1 or HR2 regions of the HIV-1 envelope glycoprotein gp41 have been shown to be effective inhibitors to prevent virus-host cell membrane fusion. These peptide drugs, however, suffer from relatively short plasma half-lives and are susceptible to enzymatic degradation. Modification of peptides/proteins with poly(ethylene glycol) (PEG) is a well-established strategy to overcome these limitations. This manuscript presents the results of a systematic study on the influence of the site of PEGylation of HR2-derived peptides, as well as of PEG molecular weight on the biological activity and proteolytic stability of these conjugates. Investigation of the fusion inhibitory efficacy of the conjugates in a model cell-cell based assay revealed a loss in activity for the PEGylated peptides as compared to the wild-type HR2-derived peptide. The loss of activity, however, can be minimized by controlling the site of PEGylation, more specifically, by introducing the PEG chain at one of the more central positions along the non-interacting α-helical surface of the peptides. The proteolytic stability of the PEG-peptide conjugates was assessed in a trypsin-based model assay, which revealed an up to 3.4-fold increase in degradation half-life that may help to compensate for the lower inhibitory efficacy of the PEG-peptide conjugates as compared to the wild-type peptide. The results of this study emphasize the power of site-specific PEGylation to improve the stability of peptide/protein drugs while minimizing adverse effects on biological activity.

Spectroscopic study of cyanine dyes interacting with the biopolymer, DNA

Dyes intercalated into DNA strands or bound to grooves show fluorescence intensity changes and aggregate formation depending on the conditions. In order to establish some empirical rules concerning dye intercalation, spectroscopic studies for the effects of DNA on several series of cyanine dyes with different aromatic rings, conjugated chain length and alkyl substituents were made. Absorption spectra, fluorescence intensity and circular dichroism spectra showed strong dependence on the species of dyes. Combination of preceding studies and these present results indicates that cyanine dyes tend to intercalate into DNA strand if their polymethine bridge was composed of only one carbon. For molecules with the longer chains irregular aggregates were formed by small amounts of DNA, which transformed into complexes composed of multiple dye and DNA strands. These results would serve as a useful guideline for designing of optical functional materials and devices utilizing DNA complex.

Antioxidant Properties of β-Carotene Isomers and Their Role in Photosystems: Insights from Ab Initio Simulations

In this work we investigate the effect of cis isomerizations and conformational changes on the antioxidant activity of β-carotene, one of the most important pigments in nature. The electrodonating (ω(-)) and electroaccepting (ω(+)) powers of the most relevant isomers of β-carotene are first evaluated in polar and nonpolar solvents using density functional theory (DFT), and these quantities are then used to establish an antioxidant scale of the isomers. The electrodonating power, which is directly related to the antioxidant activity, is shown to provide a very good correlation with the experimental data. Next, we compute the intermediate twisted structures of the β-carotene isomers generated by partial rotation of every single bond in the polyenic chain. The electrodonating and electroaccepting powers are evaluated for each of these intermediate structures along with their maximum absorption wavelengths, which are computed using time-dependent DFT (TD-DFT). The trends observed for both the electrodonating power and the maximum absorption wavelength can be rationalized in terms of the effective conjugated chain length of the structure resulting from single bond rotations. The results obtained are used to analyze the conformational distribution of β-carotene in the well-resolved photosystem I (PS-I) of purple cyanobacteria. It is then shown that the isomers present in this photosystem are those having the lowest calculated relative energies and that those with enhanced antioxidant activity are preferentially located in the inner core of the protein complex.

Conformational analysis of polymethine dyes derived from the 2-azaazulene

Abstract A systematic investigation of the conformational structure was performed for the series of symmetrical and unsymmetrical mono-, tri-, pentamethine cyanines, and styryl dyes bearing 2-azaazulenium terminal group. The rotation energy barriers of terminal groups were determined via the dynamic variable temperature NMR experiments. The conformational transformation energy was calculated by quantum chemical methods (B3LYP and M05-2X) both for the cases of considering the solvent influence and not tacking it into account. Based on the comparison of theoretical and experimental data, relative electron-donating abilities and geometrical features of the heterocyclic terminal groups in 2-azaazulenium dyes were estimated. The arrangement of certain heterocyclic nuclei in order of basicity by considering the results of the dynamic NMR investigations was proposed. Influence of the conjugated chain length and the solvent nature on the conformational lability of the investigated dye molecules was discussed.

Oligo(p‐phenylene ethynylene)–BODIPY Derivatives: Synthesis, Energy Transfer, and Quantum‐Chemical Calculations

The synthesis and energy-transfer properties of a series of oligo(p-phenylene ethynylene)-BODIPY (OPEB) cassettes are reported. A series of oligo(p-phenylene ethynylene)s (OPEs) with different conjugated chain lengths as energy donor subunit in the energy-transfer system were capped at both ends with BODIPY chromophores as energy-acceptor subunits. The effect of the conjugated chain of OPEs on energy transfer in the OPEB cassettes was investigated by UV/Vis and fluorescence spectroscopy and modeling. With increasing number n of phenyl acetylene units (n=1-7), the absorption and emission maxima of OPEn are bathochromically shifted. In the OPEBn analogues, the absorption maximum assigned to the BODIPY moieties is independent of the length of the OPE spacer. However, the relative absorption intensity of the BODIPY band decreases when the number of phenyl acetylene units is increased. The emission spectra of OPEBn are dominated by a band peaking at 613 nm, corresponding to emission of the BODIPY moieties, regardless of whether excitation is at 420 or 550 nm. Furthermore, a very small band is observed with a maximum between 450 and 500 nm, and its intensity relative to that of the BODIPY emission increases with increasing n, that is, the excited state of OPE subunits is efficiently quenched in OPEBn by energy transfer to the BODIPY moieties. Energy transfer (ET) from OPEn to BODIPY in OPEBn is very efficient (all Φ(ET) values are greater than 98 %) and only slightly decreases with increasing length of the OPE units. These results are supported by theoretical studies that show very high energy transfer efficiency (Φ(ET) >75 %) from the OPE spacer to the BODIPY end-groups for chains with up to 15-20 units.

ChemInform Abstract: Organometallic Acetylides of PtII, AuI and HgII as New Generation Optical Power Limiting Materials

AbstractReview: 106 refs.

Branched and curved nanotubular polyaniline synthesized by emulsion polymerization in presence of zinc salts of n-dodecylbenzenesulfonic acid

The presence of zinc salts of DBSA (n-dodecylbenzenesulfonic acid), designated as Zn(DBSA) 2, induced some branches and curvature of the resultant polyaniline nanotubes. These branched or curved nanotubes can be clearly seen from their SEM and TEM micrographs taken for various polyaniline nanotubes prepared in the presence of Zn(DBSA) 2. For branched or curved polyaniline nanotubes, the conjugation chain length can be monitored by the position of their λ maxs in the UV–Vis–NIR spectra.

Synthesis of polypyrrole–ferric oxide (Ppy–Fe2o3) composites and study of their structural and conducting properties

Conducting polypyrrole/α-ferric oxide (PPy–Fe2O3) composites have been prepared using chemical oxidative polymerization with different weight percentages of α-ferric oxide (10–30wt.%) dispersed during polymerization of pyrrole. These composites were characterized by FT-IR, X-ray diffraction, conductivity and scanning electron microscopy. Four-probe method was used to study the effect of doping on DC-conductivity of the composites. The dispersion of α-Fe2O3 in these composite imparts good structural and electrical properties in PPy. The percolation threshold for conductivity was found to be 10% of α-Fe2O3 contents in PPy. It arises from an enhanced homogeneous morphology, increase in crystallinity, particle size and shortening of conjugation chain length as confirmed by the scanning electron microscopy, X-ray diffraction and FT-IR analysis.

Organometallic acetylides of PtII, AuI and HgII as new generation optical power limiting materials

Within the scope of nonlinear optics, optical power limiting (OPL) materials are commonly regarded as an important class of compounds which can protect the delicate optical sensors or human eyes from sudden exposure to damaging intense laser beams. Recent efforts have been devoted to developing organometallic acetylide complexes, dendrimers and polymers as high performance OPL materials of the next generation which can favorably optimize the optical limiting/transparency trade-off issue. These metallated materials offer a new avenue towards a new family of highly transparent homo- and heterometallic optical limiters with good solution processability which outperform those of current state-of-the-art visible-light-absorbing competitors such as fullerenes, metalloporphyrins and metallophthalocyanines. This critical review aims to provide a detailed account on the recent advances of these novel OPL chromophores. Their OPL activity was shown to depend strongly on the electronic characters of the aryleneethynylene ligand and transition metal moieties as well as the conjugation chain length of the compounds. Strategies including copolymerization with other transition metals, change of structural geometry, use of a dendritic platform and variation of the type and content of transition metal ions would strongly govern their photophysical behavior and improve the resulting OPL responses. Special emphasis is placed on the structure-OPL response relationships of these organometallic acetylide materials. The research endeavors for realizing practical OPL devices based on these materials have also been presented. This article concludes with perspectives on the current status of the field, as well as opportunities that lie just beyond its frontier (106 references).

Structure and optical characteristics of poly(p-phenylenevinylene) prepared by vapor deposition polymerization

Films based on poly(p-phenylenevinylene) are prepared by pyrolitic polymerization of α,α′-dichloro-p-xylene. During monomer precipitation, the temperature on a substrate is 25, 50, or −196°C. Subsequent annealing of the precursor at 250°C yields the final product: the copolymer of p-phenylenevinylene and p-xylylene with an approximate composition of 4: 1. The surface morphology, structure, and optical characteristics of the polymer are studied. The mean-square surface roughness of the precursor is 5 nm. Thermal treatment increase the samples’ roughness up to 10 nm. When the precursor is transformed into poly(p-phenylenevinylene), the roughness coefficient decreases from 0.85 ± 0.05 to 0.74 ± 0.05 owing to the formation of a rougher surface. Characterization of the optical characteristics of the synthesized poly(p-phenylenevinylene) shows that the maximum effective conjugation chain length achieves 12 units in the copolymer prepared when the temperature on the substrate is −196°C. As the temperature on the substrate increases, the conjugation length decreases to 8 units upon precipitation. Luminescence analysis reveals the effective excitation-energy transfer from short chain fragments of poly(p-phenylenevinylene) to long chain fragments. Electron parameters of the material are estimated: i.e., the band gap, the Huang-Rhys factor, the Stokes shift, and the oscillation energy of molecules.

Synthesis and characterization of poly(n‐undecyl isocyanate)/polyaniline polyblend

AbstractPoly(n‐undecyl isocyanate) (PUDIC)/n‐dodecylbenzenesulfonic acid (DBSA)‐doped polyaniline (PANIDBSA) polyblend was prepared and the effect of the H‐bonding between these two polymers on the compatibility, conjugation chain length of PANIDBSA, and helixity of PUDIC in the polyblend system were studied. The monomer and polymer were characterized by NMR spectra and the polyblend was analyzed by FTIR, UV–vis spectra, and wide‐angle X‐ray diffraction. It was found when the blend composition of the PUDIC was higher than 10%, the WAXD patterns demonstrated lower angle shifting for the peaks at around 2θ = 2–2.5°, referring to the distance between the layers of the layered structure of PANIDBSA crystalline with increasing PUDIC, indicating the expansion of the layered structure of PANIDBSA. The FTIR spectra illustrated the presence of an absorption peak at 1700 cm−1 shift to higher wave number with PUDIC due to its H‐bonding with PANIDBSA. The UV–vis spectra of PANIDBSA described a blue‐shift of the λmax with PUDIC, indicating that the presence of PUDIC in the polyblend system can interrupt and decrease the conjugation chain length of PANIDBSA. The optical activity of the helical PUDIC decreased notably with the presence of PANIDBSA, resulting from the reversed helical effect (de‐nature) of H‐bonding. © 2010 Wiley Periodicals, Inc. J Appl Polym Sci, 2010

Triplet state spectra and dynamics of peridinin analogs having different extents of π-electron conjugation

The Peridinin-Chlorophyll a-Protein (PCP) complex has both an exceptionally efficient light-harvesting ability and a highly effective protective capacity against photodynamic reactions involving singlet oxygen. These functions can be attributed to presence of a substantial amount of the highly-substituted and complex carotenoid, peridinin, in the protein and the facts that the low-lying singlet states of peridinin are higher in energy than those of chlorophyll (Chl) a, but the lowest-lying triplet state of peridinin is below that of Chl a. Thus, singlet energy can be transferred from peridinin to Chl a, but the Chl a triplet state is quenched before it can sensitize the formation of singlet oxygen. The present investigation takes advantage of Chl a as an effective triplet state donor to peridinin and explores the triplet state spectra and dynamics of a systematic series of peridinin analogs having different numbers of conjugated carbon-carbon double bonds. The carotenoids investigated are peridinin, which has a C(37) carbon skeleton and eight conjugated carbon-carbon double bonds, and three synthetic analogs: C(33)-peridinin, having two less double bonds than peridinin, C(35)-peridinin which has one less double bond than peridinin, and C(39)-peridinin which has one more double bond than peridinin. In this study, the behavior of the triplet state spectra and kinetics exhibited by these molecules has been investigated in polar and nonpolar solvents and reveals a substantial effect of both pi-electron conjugated chain length and solvent environment on the spectral lineshapes. However, only a small dependence of these factors is observed on the kinetics of triplet energy transfer from Chl a and on carotenoid triplet state deactivation to the ground state.