Auxin Concentration Research Articles

High auxin stimulates callus through SDG8-mediated histone H3K36 methylation in Arabidopsis.

Callus induction, which results in fate transition in plant cells, is considered as the first and key step for plant regeneration. This process can be stimulated in different tissues by a callus-inducing medium (CIM), which contains a high concentration of phytohormone auxin. Although a few key regulators for callus induction have been identified, the multiple aspects of the regulatory mechanism driven by high levels of auxin still need further investigation. Here, we find that high auxin induces callus through a H3K36 histone methylation-dependent mechanism, which requires the methyltransferase SET DOMAIN GROUP 8 (SDG8). During callus induction, the increased auxin accumulates SDG8 expression through a TIR1/AFBs-based transcriptional regulation. SDG8 then deposits H3K36me3 modifications on the loci of callus-related genes, including a master regulator WOX5 and the cell proliferation-related genes, such as CYCB1.1. This epigenetic regulation in turn is required for the transcriptional activation of these genes during callus formation. These findings suggest that the massive transcriptional reprogramming for cell fate transition by auxin during callus formation requires epigenetic modifications including SDG8-mediated histone H3K36 methylation. Our results provide insight into the coordination between auxin signaling and epigenetic regulation during fundamental processes in plant development.

Pentachlorophenol Effect on Auxin Production by <i>Pseudomonas fluorescens</i> GU059580 and Its Application in Wastewater Bioremediation

Bioaugmentation by Pseudomonas strains is widely used for the removal of pollutants in wastewater. In this study, we aimed to determine the removal of pentachlorophenol (PCP, 800 mg·L<sup>–1</sup>) in secondary wastewater by the bioaugmentation process. We determined the effects of using three surfactants, namely sodium dodecyl sulfate (SDS), cetyl-tri-methyl-ammonium bromide (CTAB), and Tween 80 for PCP removal. We determined the effect of the role of PCP surfactant for the biofilm and auxin production of the selected bacterial strain of <em>P. fluorescens</em> GU059580. High-performance liquid chromatography and spectroscopic analysis were used to determine PCP removal and bacterial growth, respectively. Biofilm production was determined using 96-well polystyrene plates, and auxin production was determined using spectrophotometric measurement at 535 nm. The results showed the removal of PCP from wastewater by <em>P. fluorescens</em> GU059580 is about 90.12%. The PCP removal from wastewater showed an improvement of about 96.5% after the addition of Tween 80, whereas significant biofilm formation was found in the mineral liquid medium supplemented with PCP and Tween 80, with a value of 3.78. The highest concentration of auxin was found in the presence of PCP without surfactants, showing a value of 1.7 mg·L<sup>–1</sup>. To conclude, <em>P. fluorescens</em> GU059580 can be used in bioreactors or some specific wastewater treatment processes for bioremediation.

Phytohormones in plant responses to boron deficiency and toxicity.

Boron (B) is an essential element for plant growth. Many agricultural soils around the globe have either insufficient or excessive amounts of available B, with major implications for crop production. Understanding major limitations imposed by B nutritional disorders may allow breeding crops for improved B use efficiency as well as make them more resilient to excessive B, thus reducing yield penalties. It has become apparent that B-related physiological disorders are mediated in large part by their impact on plant hormone production and signaling. The aim of this review is to summarize current knowledge of the roles of hormones in plant responses to B and their impact on plant growth and development. The most significant effect of B deficiency is the inhibition of root elongation. Boron deficiency promotes the redistribution of auxin in the root elongation zone. Together with cytokinin signals and ethylene, this redistribution and modulation of auxin content triggers inhibition of the root cell elongation. Under B deficiency, root development is also regulated by brassinosteroids and jasmonic acid. Excess B can induce the production of reactive oxygen species (ROS). Abscisic acid and salicylic acid are both produced in response to B toxicity, and both can induce the antioxidant defense system to detoxify ROS. Another adaptation to B toxicity involves changes in the expression levels and activity of aquaporins in roots, thus reducing the uptake of water and delivery of B into the transpiration stream. In addition, abscisic acid mediates stomatal closure to further limit transpiration and the consequent accumulation of B in leaves.

Optimization of Protocol for Callus Formation and Shoot Development in Sugarcane (Saccharum officinarum L.) Cultivar CPF-248

Sugarcane production face numerous difficulties, including infestations of insects and diseases, particularly red rot, a lack of appropriate seed supply, a lack of industrial support, etc. Using a process called plant tissue culture, huge amounts of authentically grown, disease-free plant material may be produced quickly. Plant tissue culture can also be used to quickly reproduce recently released varieties with crucial agronomic characteristics. For this purpose, sugarcane callus culture was collected from the inner soft leaf sheath to increase genetic diversity. Ten different concentrations viz., 1.5, 1.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5 and 6.0 mgL-1 of 2, 4-dichlorophenoxy acetic acid in MS medium were used for callus development, along with 0 mgL-1 control was used. Different combinations and concentrations of BAP+ Kin (1.0+1.0, 1.0+1.5, 1.0+0.5, 1.0+1.0, 1.5+1.0 and 1.0+1.5 mgL-1) were used for regeneration of shoots and auxin. IBA with 6 different concentrations (0. 0.3, 0.5, 0.7, 1.5 and 1.8 mgL-1) were used for rooting of the shoots. Among all the growth regulators, 2, 4-D at 3.0 mgL-1 demonstrated the greatest auxin for callus development with BAP. The 6-12 mm meristem was grown in MS medium with NAA. It was observed that at concentrations viz., 3.5mgL-1 and 4.0mgL-1 of 2, 4-D, maximum callus (79.0-84.5 %) was developed with 4-5 mm in size. Maximum root growth and length (3.7 mm) were reported at 1.0 mgL-1 IBA and 1.0 mgL-1 Kinetin and 1.5 mgL 1 BAP in MS medium. It was concluded that auxin concentration is best for all sugarcane in vitro callus culture, which will assist researchers in future work.

Features of in vitro cultivation of rare species of the family Iridaceae Juss.

This article provides information about improving of the clonal micropropagation technology and in vitro reproduction peculiarities of some species of family Iridaceae Juss. In vitro collection of Volgograd regional botanical garden (VRBG) contains 6 species of genus Iris. As a result of the research, optimization of cultivation conditions at different stages of clonal micropropagation of species genus Iris L. cultures was carried out.
 The optimal mode of sterilization seeds of species of the genus Iris has been selected - a 5% solution of Lysofornin® 3000 at an exposure of 10 minutes. The features of the development of Iris notha and Iris pseudonotha seedlings on nutrient media with a high content of cytokinins and auxins have been studied. The greatest regenerative activity in Iris pseudonotha and Iris notha was observed on the nutrient media У MS 2 iP 1.0 mg/l + 0.5 mg/l IBA and MS + 13 mg/l BAP + 7.0 mg/l IAA, the reproduction coefficient was 7.5 and 4.7, respectively. The optimal nutrient medium for Iris pumila for long-term cultivation in vitro is the Knudson nutrient medium; regenerate plants have a slow uniform growth, while the number of abnormal and non-viable plants is minimal, which allows Iris pumila to be preserved in the collection in vitro for a long time.

Integrated physiological and weighted gene co-expression network analysis reveals the hub genes engaged in nitrate-regulated alleviation of ammonium toxicity at the seedling stage in wheat (Triticum aestivum L.).

Wheat has a specific preference for NO3 - and shows toxicity symptoms under high NH4 + concentrations. Increasing the nitrate supply may alleviate ammonium stress. Nevertheless, the mechanisms underlying the nitrate regulation of wheat root growth to alleviate ammonium toxicity remain unclear. In this study, we integrated physiological and weighted gene co-expression network analysis (WGCNA) to identify the hub genes involved in nitrate alleviation of ammonium toxicity at the wheat seedling stage. Five NH4 +/NO3 - ratio treatments, including 100/0 (Na), 75/25 (Nr1), 50/50 (Nr2), 25/75 (Nr3), and 0/100 (Nn) were tested in this study. The results showed that sole ammonium treatment (Na) increased the lateral root number but reduced root biomass. Increasing the nitrate supply significantly increased the root biomass. Increasing nitrate levels decreased abscisic acid (ABA) content and increased auxin (IAA) content. Furthermore, we identified two modules (blue and turquoise) using transcriptome data that were significantly related to root physiological growth indicators. TraesCS6A02G178000 and TraesCS2B02G056300 were identified as hub genes in the two modules which coded for plastidic ATP/ADP-transporter and WRKY62 transcription factors, respectively. Additionally, network analysis showed that in the blue module, TraesCS6A02G178000 interacts with downregulated genes that coded for indolin-2-one monooxygenase, SRG1, DETOXIFICATION, and wall-associated receptor kinase. In the turquoise module, TraesCS2B02G056300 was highly related to the genes that encoded ERD4, ERF109, CIGR2, and WD40 proteins, and transcription factors including WRKY24, WRKY22, MYB30, and JAMYB, which were all upregulated by increasing nitrate supply. These studies suggest that increasing the nitrate supply could improve root growth and alleviate ammonium toxicity through physiological and molecular regulation networks, including ROS, hormonal crosstalk, and transcription factors.

Complementary roles for auxin and auxin signalling revealed by reverse engineering lateral root stable prebranch site formation.

Priming is the process through which periodic elevations in auxin signalling prepattern future sites for lateral root formation, called prebranch sites. Thus far, the extent to which elevations in auxin concentration and/or auxin signalling are required for priming and prebranch site formation has remained a matter of debate. Recently, we discovered a reflux-and-growth mechanism for priming generating periodic elevations in auxin concentration that subsequently dissipate. Here, we reverse engineer a mechanism for prebranch site formation that translates these transient elevations into a persistent increase in auxin signalling, resolving the prior debate into a two-step process of auxin concentration-mediated initial signal and auxin signalling capacity-mediated memorization. A crucial aspect of the prebranch site formation mechanism is its activation in response to time-integrated rather than instantaneous auxin signalling. The proposed mechanism is demonstrated to be consistent with prebranch site auxin signalling dynamics, lateral inhibition, and symmetry-breaking mechanisms and perturbations in auxin homeostasis.

Bacterial secondary metabolites: Possible mechanism for weed suppression in wheat.

Chemical weed control is an effective method, but has proved hazardous for humans, environment, and soil biodiversity. Use of allelopathic bacteria (AB), may be more efficient and sustainable weed control measure. The bacterial inoculants never studied in context of their interaction with weed root exudates and precursor-dependent production of the natural phytotoxins (cyanide, cytolytic enzymes and auxin) by these stains to understand their weed suppression and wheat growth promotion abilities. Therefore, root exudates of Avena fatua, Phalaris minor, Rumex dentatus and wheat were quantified and their role in microbial root colonization and secondary metabolites production i.e. cyanide, cytolitic enzymes, phenolics and elevated auxin concentration was studied. The results depicted L-tryptophan and glycine as major contributor of elevated cyanide and elevated levels in weed rhizosphere by the studied Pseudomonas strains, through their higher root colonization ability in weeds as compared to wheat. Furthermore, the higher root colonization also enhanced p-coumaric acid (photosynthesis inhibitor by impairing cytochrome c oxidase activity in plants), and cytolytic enzymes (root cell wall degradation) concentration in weed rhizosphere. In conclusion, the differential root colonization of wheat and weeds by these strains is responsible for enhancing weed suppression (enhancing phytotoxic effect) and wheat growth promotion (lowering phytotoxic effect).

The source, level, and balance of nitrogen during the somatic embryogenesis process drive cellular differentiation.

Since the discovery of somatic embryogenesis (SE), it has been evident that nitrogen (N) metabolism is essential during morphogenesis and cell differentiation. Usually, N is supplied to cultures in vitro in three forms, ammonium (NH4+), nitrate (NO3-), and amino N from amino acids (AAs). Although most plants prefer NO3- to NH4+, NH4+ is the primary form route to be assimilated. The balance of NO3- and NH4+ determines if the morphological differentiation process will produce embryos. That the N reduction of NO3- is needed for both embryo initiation and maturation is well-established in several models, such as carrot, tobacco, and rose. It is clear that N is indispensable for SE, but the mechanism that triggers the signal for embryo formation remains unknown. Here, we discuss recent studies that suggest an optimal endogenous concentration of auxin and cytokinin is closely related to N supply to plant tissue. From a molecular and biochemical perspective, we explain N's role in embryo formation, hypothesizing possible mechanisms that allow cellular differentiation by changing the nitrogen source.

Rapid In Vitro Propagation of Fig (Ficus carica L.) ‘Violette de Solliès’ Supported by Molecular and Microscopy Analyses

Ficus carica L. is a common fig that is an incredibly nutritional fruit, well-known for its medicinal and economic values. This study aims to establish an efficient protocol for the mass propagation of fig plantlets (Ficus carica L.) for the cultivar ‘Violette de Solliès’. Surface-sterilized shoot-tip explants were cultured on Murashige and Skoog (MS) medium supplemented with different concentrations of cytokinins (6-benzylaminopurine, BAP; thidiazuron, TDZ; kinetin, Kn; and zeatin, Zea). Induced shoots were rooted on Woody Plant Medium (WPM) with different concentrations of auxins (naphthalene-acetic acid, NAA; indole-3-acetic acid, IAA; and indole-3-butyric acid, IBA). Rooted explants were acclimatized in eight different soil substrates prior to cultivation in a commercial plot. The propagated plantlets were analyzed for genetic stability and clonal fidelity using RAPD and SCoT molecular markers, whereas scanning electron microscopy (SEM) was performed to observe the stomata morphology of post-acclimatized plants. MS media supplemented with 5.0 mg/L BAP was the optimal treatment for multiple shoot induction (15.20 ± 1.03 shoots), whereas the highest percentage of rooting (93.33%) was achieved in WPM supplemented with 3.0 mg/L IBA. Plantlets were successfully acclimatized in biochar soil with a survival rate of 100%. RAPD and SCoT analysis showed no polymorphism occurrences across six subculture cycles, whereas observations via SEM indicated normal stomata structures on the leaves of acclimatized plantlets. This study documents an efficient micropropagation protocol for Ficus carica cv. ‘Violette de Solliès’ for the production of uniformed and true-to-type plant stocks suitable for commercial propagation.

Tissue Culture and Regeneration of Three Rose Cultivars

Methods of in vitro regeneration protocols were developed for three elite rose cultivars, Chewnicebell (Oso Easy Italian Ice®), Bucbi (Carefree Beauty™), and Cheweyesup (Ringo All-Star™). We evaluated the effects of different types and concentrations of auxins [dichlorophenoxyacetic acid (2,4-D) and trichlorophenoxyacetic acid (2,4,5-T)], carbohydrates [sucrose, glucose, and fructose], and cytokinins [thidiazuron (TDZ) and 6-bezylaminopurine (BAP)] on callus induction and regeneration from leaf explants. The greatest amount of regenerative callus was obtained on media containing 10 µM 2,4-D and 30 g·L−1 sucrose for Italian Ice® (40%), 10 µM 2,4-D and 60 g·L−1 glucose for Carefree Beauty™ (24%), and 5 µM 2,4,5-T and 30 g·L−1 sucrose for Ringo All-Star™ (32%). The greatest regeneration occurred when callus was transferred to media consisting of 1/2 MS media supplemented with 2.9 µM GA3 and 5 µM TDZ for Italian Ice® and Ringo All-Star™, and with 2.9 µM GA3 and 20 µM TDZ for Carefree Beauty™. Plantlets regenerated from callus were cultured on maintenance media and successfully transferred ex vitro. This study highlights the genotype-specific responses among rose cultivars and provides the first reports of in vitro regeneration for Italian Ice® and Ringo All-Star™.

Efficacy of auxin foliar application on the growth and yield of green Romaine (Lactuca sativa L. var. Jericho) grown under nutrient film technique (NFT) hydroponic system

Green Romaine (Lactuca sativa L. var. Jericho) is one of Malaysia’s trendiest salad greens. It provides many nutrients which vital for human health and body maintenance. This phenomenon has led to an increased in green Romaine production in Malaysia. However, there are several limitations to cultivate this vegetable since conventional planting techniques are still practiced in Malaysia. The present study was undertaken to investigate the efficacy of auxin foliar application on the growth performance and yield of green Romaine grown under the nutrient film technique hydroponic system. The green Romaine was treated with three different application rates of auxin (Indole-3-Acetic Acid); T0, control (0.0 ppm), T1 (50.0 ppm), T2 (100.0 ppm) and T3 (150.0 ppm). The mean value of growth and yield of green Romaine were significantly increased at a lower concentration of auxin application (T1). At this lower application rate, the leaves number of green Romaine significantly increased (P≤0.05) with mean value ranging from 17.0 to 22.0 leaves per plant as compared to the T0, T2 and T3. However, all treated plants do not show any significant increase in term of chlorophyll content. The yields of green Romaine (fresh weight and dry weight) exhibit similar pattern where the auxin foliar application at T1 significantly increased the mean value of the yield parameters with 113.0 – 130.0 g of plant fresh weight while 7.0-10.0 g of plant dry weight as compared to the highest concentration of T3, respectively. This result suggested that a low concentration of auxin helps to increase the growth performance and yield of green Romaine, thus highlights its potential as an effective plant growth promoter for plant grown under hydroponic system.

Transcriptomic and Metabolomic Analysis of Korean Pine Cell Lines with Different Somatic Embryogenic Potential.

The embryogenesis capacity of conifer callus is not only highly genotype-dependent, but also gradually lost after long-term proliferation. These problems have seriously limited the commercialization of conifer somatic embryogenesis (SE) technology. In this study, the responsive SE cell line (R-EC), the blocked SE cell line (B-EC), and the loss of SE cell line (L-EC) were studied. The morphological, physiological, transcriptomic, and metabolomic profiles of these three types of cells were analyzed. We found that R-EC had higher water content, total sugar content, and putrescine (Put) content, as well as lower superoxide dismutase (SOD) activity and H2O2 content compared to B-EC and L-EC. A total of 2566, 13,768, and 13,900 differentially expressed genes (DEGs) and 219, 253, and 341 differentially expressed metabolites (DEMs) were found in the comparisons of R-EC versus B-EC, R-EC versus B-EC, and B-EC versus L-EC, respectively. These DEGs and DEMs were mainly found to be involved in plant signal transduction, starch and sugar metabolism, phenylpropane metabolism, and flavonoid metabolism. We found that the AUX1 and AUX/IAA families of genes were significantly up-regulated after the long-term proliferation of callus, resulting in higher auxin content. Most phenylpropane and flavonoid metabolites, which act as antioxidants to protect cells from damage, were found to be significantly up-regulated in R-EC.

The locoweed endophyte Alternaria oxytropis affects root development in Arabidopsis in vitro through auxin signaling and polar transport.

Locoweeds are leguminous forbs known for their toxicity to livestock caused by the endophytic fungi Alternaria sect. Undifilum. Unlike the defensive mutualisms reported in many toxin-producing endophytes and their plant hosts, the benefits that A. sect. Undifilum can confer to it host plants remains unclear. Here, we conducted physiological and genetic analyses to show that A. (sect. Undifilum) oxytropis influences growth, especially root development, in its locoweed host Oxytropis ochrocephala and Arabidopsis. The presence of A. oxytropis significantly decreased primary root length while increasing the numbers of lateral roots and root hairs, and increasing plant leaf area and fresh weight. The fungus also increased the concentrations of plant endogenous auxin, and the expression of key genes for auxin biosynthesis, signaling, and transport. These effects on root development were abolished in mutants deficient in auxin signaling and polar transport. Alternaria oxytropis down-regulated expression of PIN1 but increased expression of PIN2, PIN7, and AUX1, which might reflect alterations in the spatial accumulation of auxin responsible for the changes in root architecture. Plant growth was insensitive to A. oxytropis when naphthylphthalamic acid was applied. Our findings indicate a function of A. oxytropis in promoting the growth and development of Arabidopsis via the regulation of auxin, which in turn suggests a possible role in benefiting its locoweed hosts via a process independent of its toxin production.

Genome-Wide Transcriptome Analysis Reveals That Upregulated Expression of Aux/IAA Genes Is Associated with Defective Leaf Growth of the slf Mutant in Eggplant

Leaf size is a crucial trait in eggplant breeding, as it influences photosynthesis, plant biomass and management. However, little is known about the molecular mechanism regulating leaf size in eggplant. This study reports a small leaf mutant (slf) generated with the mutagen ethyl methane sulfonate (EMS). The slf mutant showed restricted cell proliferation and an increased content of auxin. Transcriptome analysis revealed that several genes involved in auxin signaling are upregulated in slf. Exogenous application of auxinole, an auxin antagonist of TIR1/AFB receptors, repressed the expression of these genes and restored leaf growth of slf, suggesting that the small leaf size of slf is likely associated with auxin signaling. This study provides essential clues to unveil the molecular mechanism of leaf size regulation in eggplant.

Integrative analysis of transcriptome reveals the possible mechanism of delayed leaf senescence in pak choi (Brassica rapa subsp. chinensis) following melatonin treatment

Abstract Melatonin (MT) is a low molecular weight compound with a wide variety of biological functions in plants. It is known to delay senescence in various fruits and vegetables. This study demonstrates that MT (100 μmol/L) delayed the senescence of pak choi stored at 20 °C. A total of 1121 differentially expressed genes (DEGs) were identified in an MT-treated group in comparison to untreated pak choi. Analysis of DEGs revealed that MT-induced delay in senescence involved reduction in the expression of chlorophyll metabolism genes and regulation of the expression of hormone-related genes and leaf senescence-related transcription factors. MT decreased the activity of chlorophyll metabolism-related enzymes Mg-dechelatase, pheophytinase, and pheide a oxygenase, decreased the concentrations of abscisic acid and jasmonic acid, and increased auxin concentration. MT delayed the impact of senescence-related transcription factors BcNAC41 and BcNAC87 on tobacco leaf senescence. This study provides an insight into the molecular mechanisms of MT-induced delay of postharvest senescence in pak choi and confirms its potential as a preservation technique.

Effects and Mechanism of Enhanced UV-B Radiation on the Flag Leaf Angle of Rice.

Leaf angle is an influential agricultural trait that influences rice (Oryza sativa L.) plant type and yield, which results from the leaf bending from the vertical axis to the abaxial axis. UV-B radiation affects plant morphology, but the effects of varying UV-B intensities on rice flag leaves and the underlying molecular, cellular, and physiological mechanisms remain unknown. This experiment aims to examine the effect of natural light and field-enhanced UV-B radiation (2.5, 5.0, 7.5 kJ·m-2) on the leaf angle of the traditional rice variety Baijiaolaojing on Yuanyang terraces. In comparison with natural light, the content of brassinolide and gibberellin in rice flag leaves increased by 29.94% and 60.1%, respectively. The auxin content decreased by 17.3%. Compared with the natural light treatment, the cellulose content in the pulvini was reduced by 13.8% and hemicellulose content by 25.7% under 7.5 kJ·m-2 radiation intensity. The thick-walled cell area and vascular bundle area of the leaf pulvini decreased with increasing radiation intensity, and the growth of mechanical tissue in the rice leaf pulvini was inhibited. The flag leaf angle of rice was greatest at 7.5 kJ·m-2 radiation intensity, with an increase of 50.2%. There are two pathways by which the angle of rice flag leaves is controlled under high-intensity UV-B radiation. The leaf angle regulation genes OsBUL1, OsGSR1, and OsARF19 control hormone levels, whereas the ILA1 gene controls fiber levels. Therefore, as cellulose, hemicellulose, sclerenchyma, and vascular bundles weaken the mechanical support of the pulvini, the angle of the flag leaf increases.

Exogenous chitosan enhances the resistance of apple to Glomerella leaf spot

Glomerella leaf spot (GLS), caused by the fungal phytopathogen Glomerella cingulata, is one of the most devastating premature defoliation diseases affecting apple production. Chitosan (CHT) is a degraded product of chitin and is used for bacteriostasis and postharvest preservation. Herein, we investigated the effects of CHT on improving the apple resistance to GLS. We identified that spraying with 0.5 g·L−1 exogenous CHT was the optimal concentration to reduce the G. cingulata disease severity on detached leaves of apple seedlings. Further study demonstrated that the exogenous CHT application significantly enhanced the superoxide dismutase (SOD) activity, elevated alicylic acid (SA) and jasmonic acid (JA) contents, increased certain kinds of phenolic compound contents and up-regulated the expression of different disease resistance-related genes in inoculated leaves than plants without CHT pretreatment. Furthermore, the exogenous CHT application significantly reduced the contents of abscisic acid (ABA), 1-aminocyclopropanecarboxylic acid (ACC), and auxin (IAA) of G. cingulata infection. Additionally, the CHT spraying treatment reduced the amino acid contents compared with the control plants. The results indicated that exogenous spraying of CHT improved the resistance of apples to GLS through enhancing plant immunity.

Transcriptome and hormones analysis provide insights into elongated fruit somaclonal mutant in ‘Akihime’ strawberry

Fruit shape is an important agronomic trait. However, the regulatory mechanism of strawberry fruit shape remains largely unknown. In this study, we firstly compared cultivated strawberry ‘Akihime’ with its elongated fruit somaclonal mutant (finger strawberry). The plant height, crown diameter, leaf length and some photosynthetic indexes were no significant changes between ‘Akihime’ and finger strawberry, while the fruit shape of them had obvious differences. Histological observation showed that fruit shape changes mainly resulted from the change of cell area, especially cell length, at small green fruit stage of ‘Akihime’ and finger strawberry. Next, the endogenous hormone contents of small green fruit of ‘Akihime’ and finger strawberry were investigated by HPLC-MS/MS. We found that the auxin content in the finger strawberry dramatically increased compared with ‘Akihime’, while the content of gibberellin and brassinosteroids had no significant difference between ‘Akihime’ and finger strawberry. Finally, small green fruits of ‘Akihime’ and finger strawberry were used for identifying key genes responsible for the elongated fruit phenotype through RNA-seq. A total of 674 differentially expressed genes (DEGs) were identified, including 248 up-regulated genes and 426 down-regulated genes. GO and KEGG enrichment analysis showed the DEGs were mainly enriched in DNA replication, cell cycle, plant hormone synthesis and signal transduction. Interestingly, auxin-related genes such as FaIAA33, FaSAUR76, FaSAUR34, FaARF and some transcription factors such as FaMYBs, FabHLHs, FaNACs were differentially expressed in ‘Akihime’ and finger strawberry, which may play a crucial role in the formation of elongated fruit mutant phenotype. These results will provide some insights into the regulatory mechanism of strawberry fruit shape and are helpful for appearance quality improvement of strawberry.

Comparative Biochemical and Transcriptomic Analyses Provide New Insights into Phytoplasma Infection Responses in Cucumber.

Flat stem and witches’ broom phytoplasma-like symptoms in the cucumber inbred line C17 were observed in a greenhouse at Yangzhou University, China for three consecutive planting seasons; these symptoms resulted in a decreased yield. To better understand the cause of these symptoms, 16S rRNA PCR, plant hormones, mineral elements, and RNA-seq profiling were performed using symptomatic and normal stem samples. The results showed that the causal agent was classified as the Candidatus phytoplasma asteris strain, a plant pathogenic prokaryote that could not be cultured in vitro. Measurement of plant hormones showed that auxin, salicylic acid, and jasmonic acid contents were significantly increased, whereas that of ethylene’s immediate biosynthetic precursor, 1-aminocyclopropane-1-carboxylic acid, was decreased in the phytoplasma-infected stems compared with the healthy stems. Furthermore, measurement of mineral element composition showed that magnesium, calcium, sodium, iron, and zinc concentrations significantly changed in the phytoplasma-infected cucumber stems compared with the uninfected stems. Comparative RNA-seq identified 253 differentially expressed genes, including 179 upregulated and 74 downregulated genes. Further analyses suggested that genes related to phenylpropanoid biosynthesis, phenylalanine metabolism, and plant hormone signal transduction contributed to phytoplasma infection. Taken together, this study presents the first in-depth assessment of disease symptoms and biochemical content of cucumber stems known to be infected with phytoplasma.