Organic carbon mineralization is the main driving force of metal migration and transformation in sediments, greatly influencing the distribution, pollution degree, and toxicity of toxic metals. However, relevant research on this subject is still limited. In this study, the concentration of toxic metals (Cr, Cd, Cu, Pb, Zn, Co, Fe, Mn, Ni, As) in the solid and liquid phase (porewater) of sediments were measured, toxic metal pollution degree and toxicity of the Yellow Sea (YS) and the East China Sea (ECS) were assessed. Combined with the rate of organic carbon mineralization, the impact of organic carbon mineralization was analyzed. The results showed that Ni was slightly enriched and posed a certain ecological risk, and As was moderately enriched in the studied area, Pb was at a moderate pollution level in the studied area. Zn, Co, Mn, and Fe were at a moderate pollution level in the mud area of SYS and the west coastal area of ECS. Additionally, the total organic carbon mineralization rate (TCMR) in the ECS (5.12–18.04 mmol C m−2 d−1) was slightly higher than that in the YS (3.29–14.46 mmol C m−2 d−1) during spring. Moreover, organic carbon mineralization promotes metal enrichment, and the TCMR was significantly correlated with the pollution load index. Thus, TCMR can be used as an indicator to predict the degree of metal pollution. Furthermore, organic carbon mineralization promotes the mobilization of Cu from the solid phase to the liquid phase, while facilitating the transfer of Cr, Pb, Co, Ni, and Fe from the liquid phase to the solid phase. This process increases the potential risks of Cu and reduces the toxicity of Cr, Pb, Co, Ni, and Fe. Therefore, the impact of organic carbon mineralization should be considered in future assessments and predictions of toxic metal pollution and toxicity.
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