The CD of various DNAs over a wide range of base composition has been measured in different alkali salt solutions. The salt-induced changes of the CD spectra depend on base composition and on the nature of the cation and anion of the supporting salt in the solution. Very different CD spectra, typical for d(G · C)-rich and d(A · T)-rich DNA, are obtained in concentrated LiCl solution, but the nature of CD changes (depression of the positive CD band with almost no change to the negative band) are similar. In the presence of the salts investigated, LiCl, NaCl, CsCl and NaClO 4, the CD amplitudes are lowered monotonically with increasing salt molarities. In the presence of high concentrations of NaClO 4 and trifluoroacetate relatively high CD amplitudes appear, particularly for d(G · C)-rich DNA compared to the very weak CD maxima under the action of chloride or acetate. The variation of the CD amplitude at 267 and 283 nm as a function of decreasing water activity coefficients indicates that very d(A · T)-rich DNA is relatively less changed in comparison to DNA of high and medium G+C content. In the presence of NaClO 4, however, changes of d(G · C)-rich DNA are also weak in contrast to NaCl at the same water activity. The base-composition dependent conformational changes found at reduced water activity are explained by the different abilities of d(A · T)-rich and d(G · C)-rich regions to undergo the B- to C-like transition, which in turn may be interpreted by different abilities to increase the helix winding angle. Thus certain d(A · T)-rich regions seem to be restricted to an increased helix winding. Comparison with poly(dA) · poly(dT) and poly(dA-dT) · poly(dA-dT) shows that long homooligonucleotide sequences are probably responsible for this restriction while alternating structures tend to increase the helix winding. The differential effects of anions on CD spectra show a close correlation to their effectiveness in decreasing the activity coefficients of the bases as reported by Robinson, D.R. and Grant, M.E. (1966) J. Biol. Chem. 241, 4030–4042. Different melting temperature changes produced by those salts agree with their results. Thus the perchlorate-induced conformational variations are interpreted in terms of unwinding of the double-helical structure by an influence of the polar anions with the primary (phosphate sites) and secondary (bases) hydration sites.
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