Fish Assemblage Composition Research Articles

Quantifying Patterns in Fish Assemblages and Habitat Use Along a Deep Submarine Canyon-Valley Feature Using a Remotely Operated Vehicle

The aim of this study was to document the composition and distribution of deep-water fishes associated with a submarine canyon-valley feature. A work-class Remotely Operated Vehicle (ROV) fitted with stereo-video cameras was used to record fish abundance and assemblage composition along transects at water depths between 300 and 900 metres. Three areas (A, B, C) were sampled along a submarine canyon-valley feature on the continental slope of tropical north-western Australia. Water conductivity/salinity, temperature, and depth were also collected using an ROV mounted Conductivity Temperature and Depth (CTD) instrument. Multivariate analyses were used to investigate fish assemblage composition, and species distribution models were fitted using boosted regression trees. These models were used to generate predictive maps of the occurrence of four abundant taxa over the survey areas. CTD data identified three water masses, tropical surface water, South Indian Central Water (centred ∼200 m depth), and a lower salinity Antarctic Intermediate Water (AAIW) ∼550 m depth. Distinct fish assemblages were found among areas and between canyon-valley and non-canyon habitats. The canyon-valley habitats supported more fish and taxa than non-canyon habitats. The fish assemblages of the deeper location (∼700–900 m, Area A) were different to that of the shallower locations (∼400–700 m, Areas B and C). Deep-water habitats were characterised by a Paraliparis (snail fish) species, while shallower habitats were characterised by the family Macrouridae (rat tails). Species distribution models highlighted the fine-scale environmental niche associations of the four most abundant taxa. The survey area had a high diversity of fish taxa and was dominated by the family Macrouridae. The deepest habitat had a different fish fauna to the shallower areas. This faunal break can be attributed to the influence of AAIW. ROVs provide a platform on which multiple instruments can be mounted and complementary streams of data collected simultaneously. By surveying fish in situ along transects of defined dimensions it is possible to produce species distribution models that will facilitate a greater insight into the ecology of deep-water marine systems.

Effects of different indices and pairwise methods on the longitudinal pattern of β diversity of stream fish assemblages

AbstractBeta diversity is the key and central issue of theoretical and applied ecological questions, including those regarding spatial variation along gradients and conservation biodiversity. In contrast to the alpha diversity of stream fish assemblages, little concern has been reached regarding the factor affecting of spatial variation in beta diversity along longitudinal gradients, which may be modified by scale, indices of beta diversity and pairwise methods. To understand the spatial patterns and processes in the species composition of stream fish assemblages along the river continuum, we need to disentangle the influence of different beta diversity indices and pairwise methods on the longitudinal patterns of beta diversity. In this study, we chose four beta diversity indices (Jaccard, Sørensen, Simpson and additive partitioning) and two pairwise methods (mean beta diversity between the focal assemblage and all other assemblages; beta diversity between focal and immediate neighbouring assemblages downstream) to quantify the spatial pattern of fish beta diversity along the river continuum. We found that (1) although the four diversity indices differed in emphasis, they showed the same pattern of spatial variation in the longitudinal gradients of the river; (2) the same diversity index using different pairwise methods calculation may result in completely different spatial patterns; (3) beta diversity indices and pairwise may not have a significant effect on the ecological application of beta diversity, at least in community assembly. In conclusion, the results of our study suggest that at least in the longitudinal gradient of the river there may not be much difference in quantifying the spatial variation of beta diversity; however, pairwise methods between sampling sites need to be chosen according to specific research objectives.

Diversity, palaeoecology and palaeoenvironmental significance of the Eocene chondrichthyan assemblages of the Bolca Lagerstätte, Italy.

Over the last few years, the morphology, taxonomy and systematics of the cartilaginous fish taxa of the two main sites of the Bolca Lagerstätte, Italy, (Pesciara and Monte Postale sites) have been extensively discussed in a series of papers, resulting in a complete revision of this neglected component of the Eocene Tethyan ichthyofauna. Here, we provide a comprehensive overview of the diversity, palaeoecology and palaeoenvironmental significance of the two chondrichthyan assemblages of the Pesciara and Monte Postale sites. The assemblages include 14 shark species (Lamniformes and Carcharhiniformes) and batoids (Torpediniformes, Rhinopristiformes, Myliobatiformes, Platyrhinidae and Zanobatidae), as well as a single putative chimaeriform. The Pesciara and Monte Postale sites are characterized by eight chondrichthyan taxa each, but the taxonomic compositions are distinctly different reflecting the dissimilarities in the overall composition of both fish assemblages. Palaeoecological interpretations and habitat preferences of the two chondrichthyan assemblages are consistent with previously hypothesized palaeoenvironmental settings based on sedimentological, palaeontological and geochemical evidence. The chondrichthyan assemblages of the two sites appear to be constituted by ecologically vicariant taxa, with both characterized by a predominance of benthic species with durophagous/cancritrophic feeding modes. Taxonomic composition, habitat preferences and palaeobathymetric analyses support the hypothesis that both assemblages occupied tropical marine shallow waters (likely up to 50 m deep) of the inner portion of the Lessini Shelf. The taxonomic composition of both sites is considerably different from that of any other contemporaneous Tethyan and Boreal chondrichthyan assemblages.

The Three-Dimensional Structure of Mediterranean Shallow Rocky Reefs: Use of Photogrammetry-Based Descriptors to Assess Its Influence on Associated Teleost Assemblages

In the Mediterranean Sea, shallow rocky reefs and the associated three-dimensional (3D) structure support rich and abundant communities; they are therefore of functional importance, in particular for the renewal of fish stocks. However, these habitats and their functions are likely to be altered by anthropogenic pressures inducing habitat transformations. It is therefore necessary to assess their 3D structure, their transformations and relationship to communities, especially for management and conservation purposes. In this article we aimed (i) to compare two methods that quantify the metrics of the 3D structure (rugosity) of shallow rocky reefs (chain-and-tape method and photogrammetry), and (ii) to quantify the possible links between this habitat structure and the fish assemblages. We found that photogrammetry and the chain-and-tape method yielded a similar estimate of rugosity, but photogrammetry was the most efficient method in terms of measurement quality and time (when considering in-water acquisition). This method also displayed the best repeatability. The 3D habitat descriptors (mean surface rugosity, variation of surface rugosity, and depth) differed significantly between the studied sites and were therefore included as covariables. Total fish abundance and species richness increased with higher mean surface rugosity. In addition, the composition of fish assemblages was significantly influenced by surface rugosity, although this effect was modulated by depth. When focusing on specific taxa, neither density patterns nor size class distributions displayed clear patterns in relation to rugosity metrics. However, this study demonstrated that spatial variability of teleost fish assemblages can be explained by habitat rugosity which probably increases the number of shelters and food resources, and therefore improves chances of survival. In addition, our study has shown that photogrammetry is an appropriate method to assess 3D structure metrics in a temperate rocky reef.

All shallow coastal habitats matter as nurseries for Mediterranean juvenile fish

Coastal zones are ecosystems of high economic value but exposed to numerous disturbances, while they represent nurseries for many fish species, raising the issue of the preservation of their functions and services. In this context, the juvenile fish assemblages of all types of habitats present in shallow coastal zones were studied on the south-east coast of France using underwater visual censuses in warm (June–July 2014) and cold (April 2015) periods. A total of fourteen habitat types were characterized, which could be grouped into three broad categories, rocky substrates (natural and artificial), sedimentary bottoms with all levels of granulometry, and seagrass beds including Cymodocea nodosa and Posidonia oceanica meadows; the ecotones or interfaces between the three broad habitat categories were individualized as particular habitat types. The abiotic and biotic descriptors of the 14 habitat types individualized did not vary with time, except for a higher cover percentage and canopy height of macrophytes in the warm period, which increased the three-dimensional structure of some habitats. The taxonomic composition and density of juvenile fish assemblages were analyzed using both multivariate and univariate descriptors, after grouping the 57 fish species recorded into 41 well-individualized taxa. Juvenile fishes were recorded in all habitat types, with higher mean species richness and abundance during the warm than the cold period. The richest habitats in terms of both fish species richness and abundance were the natural rocky substrates and the interfaces between Posidonia beds and the other habitats. Although juvenile fish assemblage composition differed among habitat types and between periods, the most abundant fish species were Atherina sp., Sarpa salpa, Gobiidae, Symphodus spp., Pagellus spp. and several Diplodus species, which colonized 7 up to 14 different habitat types (depending on taxa) during their juvenile life. Most species settled in one or a few specific habitats but rapidly colonized adjacent habitats when growing. This study provided evidence of the role of all types of shallow coastal habitats as fish nurseries and their varying pattern of occupation in space and time by the different juvenile stages. It highlighted the importance of the mosaic of habitats and interfaces for the complete development of all juvenile life stages of fishes, and for the preservation of a high diversity of coastal fish assemblages and fisheries resources in the Mediterranean Sea.

Plasticity of trophic interactions in fish assemblages results in temporal stability of benthic-pelagic couplings

This study addresses the temporal variability of couplings between pelagic and benthic habitats for fish assemblages at five periods in a shallow epicontinental sea, the Eastern English Channel (EEC). Organic matter fluxes fueling fish assemblages and the relative contribution of their different sources were assessed using stable isotope analysis and associated isotopic functional metrics. Couplings between benthic and pelagic realms appeared to be a permanent feature in the EEC, potentially favored by shallow depth and driven by the combination of two trophic processes. First, trophic interactions exhibited plasticity and revealed resource partitioning. Second, changes in the composition of fish assemblages did not impact benthic-pelagic couplings, as most dominant species were generalists during at least one time period, allowing complete use of available resources. Examining both unweighted and biomass-weighted indices was complementary and permitted a better understanding of trophic interactions and energy fluxes.

Short-term change in fish assemblages after the passage of a typhoon in a temperate, coastal bay

To study the effects of a typhoon on a temperate, coastal bay community, the species composition, catch amount, and diversity of epipelagic fish assemblages were investigated. Fish samples were taken from catches of a purse seine fishery in Tachibana Bay, Japan between May and July 2011, covering before and after the passage of a typhoon in the area. Although major changes in total catch amount were not observed before and after the passage of the typhoon, the abundance of the Japanese anchovy, Engraulis japonicus Temminck et Schlegel, 1846, markedly decreased and bycatch of species increased, accompanied by increasing levels of diversity of the fish assemblage. Multivariate analysis showed that community differences before and after the passage were quantitative rather than qualitative. Comparisons in total length frequencies between the two periods indicated that specimens of the species compared were bigger in size for Trachurus japonicus (Temminck et Schlegel, 1844) and smaller for E. japonicus in the “after” period. These results suggest that the passage of the typhoon triggered not only interspecific faunal change but also intraspecific recruitment shifts in and around the bay.

EDNA metabarcoding in lakes to quantify influences of landscape features and human activity on aquatic invasive species prevalence and fish community diversity

AbstractAimOur goal was to use eDNA metabarcoding to characterize fish community diversity, detect aquatic invasive species (AIS) and assess how measures of community (or AIS) diversity are influenced by lake physical and environmental covariates, measures of hydrological connectivity and human accessibility.LocationMichigan, USA.MethodseDNA samples collected from 22 lakes were sequenced using two mitochondrial gene regions (12S and 16S rRNA). Metabarcoding data were compared to traditional fisheries survey data for a subset of lakes, and data from all 22 lakes were combined with environmental information to identify significant associations with community diversity and AIS relative abundance.ResultsOccupancy modelling indicated that detection probabilities were generally higher with eDNA than traditional fisheries gear. Measures of connectivity with upstream aquatic habitats were positively associated with both AIS relative abundance and fish species diversity. We also demonstrate the use of spatial interpolation methods to map distributions of species diversity and AIS relative abundance within lakes.Main conclusionseDNA metabarcoding methods provided information on the composition and diversity of fish assemblages and the presence of AIS in freshwater lakes that varied greatly in drainage connectivity and anthropogenic development. Our case study identified associations between environmental covariates and fish diversity or AIS relative abundance across lakes. This information is of particular importance given increasing anthropogenic disturbance, invasive species spread and associated declines in aquatic biodiversity. Incorporating eDNA metabarcoding as a supplement to traditional fisheries surveys will permit managers to identify greater numbers of taxa, including early detection of AIS, with less field effort and fish mortality. Further, eDNA methods may more accurately identify physical and biological features that correlate with diversity and abundance and allow agencies to more effectively direct AIS management activities.

Local Environmental Context Structures Animal-Habitat Associations Across Biogeographic Regions

The mechanisms that govern fauna-habitat associations across multiple spatial scales remain largely undefined. Can environmental factors structure fauna-habitat associations over both local and global spatial scales, alongside biogeographical processes and patterns? We compare the extent to which the use of mangroves by fishes is consistent within and between biogeographic locations, and whether any similarities and differences can be attributed to the environmental context of those forests, such as the physical environment, seascape composition and constraints on access by fishes. We focus on three important proxies of these structuring forces for fish—salinity, distance to reefs and tidal amplitude. Using directly comparable remote underwater visual census from a range of diverse environmental contexts in the Central and Eastern Indo-Pacific, we examine similarity in the family-level taxonomic composition of fish assemblages in mangrove forests. Local environmental context appears to explain similarities and differences in mangrove association by fishes at both regional and local scales across the Indo-Pacific. There were strong consistencies in taxonomic composition in similar environmental contexts despite geographic separation. Tidal amplitude was a powerful explanatory factor that interacted with both distance to reef and salinity in partitioning variation in fish assemblage structure. Substantial differences in the use of mangroves between regions appear to be independent of historical biogeography, relating instead to local context. Our findings suggest that the effects of local context on habitat suitability can play out over biogeographical scales, and global similarities in fauna-habitat associations may be partially explained by comparable environmental contexts, with important management implications.

Seasonal variation and drivers of zooplankton, macroinvertebrate and littoral fish communities from irrigation ponds in a semi-arid region in the Eastern Cape (South Africa)

Irrigation ponds are increasingly abundant globally, particularly in water-stressed countries with limited natural surface waters, yet knowledge of their ecology is limited. Here, we assessed zooplankton, macroinvertebrate, and littoral fish communities from irrigation ponds located in the Sundays River Valley in South Africa. This study assessed the seasonal community patterns in response to physico-chemical and biotic components. Water temperature, water depth, Secchi depth, and ammonium concentrations differed significantly across seasons. Similarly, Chlorophyll-a concentrations differed seasonally, with water transparency identified as the main driver. Zooplankton was dominated by Rotifera, Copepoda and Cladocera. Seasonal changes in temperature and subsequent fluctuations in water levels resulted in changes in zooplankton community. Macroinvertebrates were dominated by insects, notably the families Corixidae and Naucoridae. The littoral fish community comprised of Glossogobius callidus, Oreochromis mossambicus and Gambusia affinis. Zooplankton, macroinvertebrates and littoral fish abundances, species richness, diversity and assemblage composition differed significantly across seasons with temperature identified as the main driver of these differences. This study demonstrates that bottom-up processes are the dominant drivers of the irrigation pond communities in the Sundays River Valley and highlights the relevance of seasonal abiotic drivers in structuring these communities, particularly G. callidus and G. affinis.

Effect of environmental and spatial factors on small-sized fish assemblages in a tropical river

ABSTRACT The river continuum concept predicts that gradual changes in river geomorphology and hydrology can drive longitudinal changes in aquatic community structure. Accordingly, we evaluated how environmental variables (electrical conductivity, pH, water transparency and water velocity), spatial factors (distance from headwaters and Moran’s eigen vector maps - MEMs), and the presence of dams affect small-sized fish assemblages along a 105-km stretch of the upper Branco River, a tributary in the Madeira River, Amazonas Basin, Brazil. Seine-net based collections were carried out at 15 sites up- and downriver from dams during the 2019 dry season. We captured a total of 4,330 individual fish belonging to three orders, nine families and 26 species (and a hybrid individual). Electrical conductivity and pH were affected by the presence of dams and the distance from headwaters. Species richness and abundance did not vary in response to environmental variables. While species richness showed no significant variation along the sampled river section, abundance showed a negative relationship with distance from headwaters. Species composition varied significantly in response to pH, linear spatial factors and the presence of dams. Our results suggest that change in species composition of small-sized fish assemblages in the upper Branco River occurs due to variation in water characteristics, inherent dispersal limitation, and in response to the presence of dams.

Trade-off between number and length of remote videos for rapid assessments of reef fish assemblages.

Remote underwater videos are widely employed to assess the structure and composition of reef fish assemblages but the sampling effort employed on each survey differs considerably, indicating that both the number of assessments and video length could be optimized. We searched for this optimal sampling effort in remote video samples to conduct rapid assessments of community composition and discussed the relation between number of replicates and video length, and how it impacts the method's efficiency to characterize species assemblages. Remote video recordings from tropical reefs in northeastern Brazil were used to investigate how fish species richness and composition builds across time and number of assays. Videos as short as 5 min successfully recorded species richness, requiring about five repetitions to record most species that compose 80% of the total biomass. Recording species composition required even less time in these reefs, setting a minimum of 3 min with the same five videos. By comparing the detected richness per analysed time unit, we found several shorter videos recorded for more species than a few longer videos, indicating that increasing the sampling coverage in the reef area might be better than just extending the video length for rapid assessments.

Impacts of large and small barriers on fish assemblage composition assessed using environmental DNA metabarcoding

River fragmentation caused by instream barriers is a leading cause of biodiversity loss, particularly for freshwater migratory fish, the vertebrate group that has suffered the steepest decline. However, most studies have tended to focus on the impacts of large dams on only a few taxa. We estimated the cumulative impact of both large and small barriers on fish species richness and relative abundance along an altitudinal gradient in the main stem of the River Allier (France). Using eDNA metabarcoding, we identified 24 fish zero-radius operational taxonomic units (zOTUs), corresponding to 26 species distributed along the main stem of the river. Elevation explained the greatest amount of variation in fish distribution, together with average flow, barrier density and its interaction with cumulative barrier height. Based on eDNA, the largest discontinuity in species richness was not related to the location of Poutès, the largest dam in the system, but located downstream from it. Our results indicate that, in addition to the more obvious effects of large dams on migratory fish such as the Atlantic salmon, the cumulative effects of small barriers can have widespread impacts on fish species richness and relative abundance, which should not be overlooked. We suggest that, as for other fragmented rivers, acting on numerous small barriers might bring about greater benefits in fish species richness than focusing only on the largest dams.

High and dry in days gone by: Life‐history theory predicts Appalachian mountain stream fish assemblage transformation during historical drought

AbstractUnderstanding the ecological dimensions of drought is critical for predicting how humans and nature will be affected by the expected increased prevalence of drought in the future. We tested life‐history‐based predictions for fish assemblage responses to drought using retrospective analysis of long‐term (1986–2003) fish surveys from two streams in the Appalachian Mountains of North America. We hypothesised that (1) fish assemblage composition would correlate with wet and dry hydrologic conditions as assemblages fluctuated within a loose equilibrium and (2) life‐history traits of fishes would correlate with dry versus wet periods such that opportunistic life‐history strategists would dominate during drought. Results showed fish assemblage changes in Little River and Cataloochee Creek correlated with drought severity measured one year prior to fish surveys. Fish assemblages at all three sampling sites in Little River and two sites in Cataloochee Creek fluctuated within a loose equilibrium, while the remaining two sites in Cataloochee Creek indicated directional change. Life‐history traits for fishes in Cataloochee Creek correlated with one‐year time lag fluctuations in drought caused by opportunistic species being dominant during drought and periodic/equilibrium species dominant during wet periods. Time series plots of fish abundances aggregated by life‐history strategy revealed dominance of opportunistic species emerged at the onset of a multi‐year drought spanning 1998–2004, particularly for the two sites undergoing directional change. Our work provides empirical evidence for theoretical linkages between life history and environmental fluctuations and can ultimately be used to predict stream fish community response to future drought regimes.

Mesophotic fish communities of the ancient coastline in Western Australia.

Marine diversity across the Australian continental shelf is shaped by characteristic benthic habitats which are determined by geomorphic features such as paleoshorelines. In north-western Australia there has been little attention on the fish communities that inhabit an ancient coastline at ~125 m depth (the designated AC125), which is specified as a key ecological feature (KEF) of the region and is thought to comprise hard substrate and support enhanced diversity. We investigated drivers of fish species richness and assemblage composition spanning six degrees of latitude along sections of the ancient coastline, categorised as ‘on’ and ‘off’ the AC125 based on depth, across a range of habitats and seafloor complexity (~60–180 m depth). While some surveyed sections of the AC125 had hard bottom substrate and supported enhanced fish diversity, including over half of the total species observed, species richness and abundance overall were not greater on the AC125 than immediately adjacent to the AC125. Instead, depth, seafloor complexity and habitat type explained patterns in richness and abundance, and structured fish assemblages at both local and broad spatial scales. Fewer fishes were associated with deep sites characterized by negligible complexity and soft-bottom habitats, in contrast to shallower depths that featured benthic biota and pockets of complex substrate. Drivers of abundance of common species were species-specific and primarily related to sampling Areas, depth and substrate. Fishes of the ancient coastline and adjacent habitats are representative of mesophotic fish communities of the region, included species important to fisheries and conservation, and several species were observed deeper than their currently known distribution. This study provides the first assessment of fish biodiversity associated with an ancient coastline feature, improving our understanding of the function it plays in regional spatial patterns in abundance of mesophotic fishes. Management decisions that incorporate the broader variety of depths and habitats surrounding the designated AC125 could enhance the ecological role of this KEF, contributing to effective conservation of fish biodiversity on Australia’s north west shelf.

Waterfalls mediate the longitudinal distribution of diadromous predatory fishes structuring communities in tropical, short, steep coastal streams

Abstract Tropical short, steep coastal streams are typically dominated by diadromous species, especially amphidromous fishes, crustaceans, and molluscs. We undertook a study to determine the distribution of fishes along the stream continuum and determine if substantial natural instream barriers influenced assemblage composition. We surveyed fish assemblages in three short, steep coastal streams in the Australian Wet Tropics by snorkelling and performing single pass counts in each 100‐m section along the entire main channel from the high‐tide mark to the source (or near source: until fish were no longer recorded). A primary focus was mapping the distribution and relative abundance of sicydiine gobies, and we also estimated freshwater crustacean numbers (Caridea: Palaemonidae and Atyidae). In total, 2,837 individual fish of 25 species were recorded upstream of the high‐tide mark across the three streams and the first records of an additional sicydiine goby (Smilosicyopus leprurus) were obtained from continental Australia. Consistent with findings from tropical Pacific island streams, we observed a shift in fish assemblage composition along the elevation gradient and in relation to major instream barriers (e.g. waterfalls >5 m, and high flow chutes across smooth bedrock surfaces). Species richness of diurnal predatory fishes was greatest in the lower course of streams and absent upstream of major instream barriers. Diurnal predatory fishes were, in some instances, found upstream of barriers. Specifically, large adult (>200 mm total length) Kuhlia rupestris (diurnal predators) accessed reaches above challenging sequences of cascades combined with small waterfalls. In contrast, all sizes of that species, adult Kuhlia marginata (>150 mm total length) and a diversity of other diurnal predatory fishes occupied the lower course of streams including upstream of gentle cascade sequences or isolated small waterfalls. Where abundances of diurnal predatory fishes were high, freshwater carideans were rarely observed. Peak densities of carideans were observed upstream of major barriers, with moderate densities in the upper mid‐course in the presence of few Kuhlia spp. The current study demonstrates the value of complete single‐pass surveys of fish assemblages in tropical short, steep coastal streams by revealing the highly localised occupation of particular reaches by rare fishes. It also points towards the importance of stream‐specific characteristics, namely the position of waterfalls in dictating diadromous predator distribution with consequences for community structure, thereby aligning with the Riverine Discontinuum Concept.

ICHTHYOFAUNA IN THE INNER CONTINENTAL SHELF NEXT TO THE PARANAGUÁ ESTUARINE COMPLEX, SOUTHERN BRAZIL

The composition and structure of fish assemblages in the inner continental shelf of the Paraná State are affected by cold fronts and the rainfall regime. Data from fishing activities in this region, as well as the analysis of environmental characteristics, are the main tools available for understanding fish dynamics, under influence of increasing human activities. In order to better understand patterns and temporal variations in fish assemblages in the inner continental shelf of the Paraná State, a total of 24 double trawls were performed with an otter trawl between August 2000 and July 2001, in two sampling areas, the North area in front of the northern mouth of the Paranaguá Estuary Complex, and the South area, in front of the Leste beach. A total of 45,277 fish specimens belonging to 35 families and 97 species were caught. Sciaenidae was the most abundant family, with 37.1% of the total number of individuals caught, and with the highest richness (18 species). Statistical analyses evidenced significant differences in environmental characteristics and in fish fauna, and that both areas disturbances were observed in the fish assemblages during the dry and wet season, being more intense in the Southern area, disturbances that would be related to the shrimp fishing present in the two areas sampled in this study.

Valley-scale hydrogeomorphology drives river fish assemblage variation in Mongolia.

River hydrogeomorphology is a major driver shaping biodiversity and community composition. Here, we examine how hydrogeomorphic heterogeneity expressed by Functional Process Zones (FPZs) in river networks is associated with fish assemblage variation. We examined this association in two distinct ecoregions in Mongolia expected to display different gradients of river network hydrogeomorphic heterogeneity. We delineated FPZs by extracting valley‐scale hydrogeomorphic variables at 10 km sample intervals in forest steppe (FS) and in grassland (G) river networks. We sampled fish assemblages and examined variation associated with changes in gradients of hydrogeomorphology as expressed by the FPZs. Thus, we examined assemblage variation as patterns of occurrence‐ and abundance‐based beta diversities for the taxonomic composition of assemblages and as functional beta diversity. Overall, we delineated 5 and 6 FPZs in river networks of the FS and G, respectively. Eight fish species were found in the FS river network and seventeen in the G, four of them common to both ecoregions. Functional richness was correspondingly higher in the G river network. Variation in the taxonomic composition of assemblages was driven by species turnover and was only significant in the G river network. Abundance‐based taxonomic variation was significant in river networks of both ecoregions, while the functional beta diversity results were inconclusive. We show that valley‐scale hydrogeomorphology is a significant driver of variation in fish assemblages at a macrosystem scale. Both changes in the composition of fish assemblages and the carrying capacity of the river network were driven by valley‐scale hydrogeomorphic variables. River network hydrogeomorphology as accounted for in the study has, therefore, the potential to inform macrosystem scale community ecology research and conservation efforts.

Tropicalization and kelp loss shift trophic composition and lead to more winners than losers in fish communities.

Climate-mediated species redistributions are causing novel interactions and leading to profound regime shifts globally. For species that expand their distribution in response to warming, survival depends not only on their physiological capacity, but also on the ability to coexist or be competitive within the established community. In temperate marine reefs from around the world, the range expansion of tropical species, known as 'tropicalization', has been linked to the disappearance of temperate habitat-forming kelps and shifts to dominance by low-biomass turfing algae. The consequences of these range expansions and habitat changes on resident fish communities are, however, unclear. Here, we use data derived from baited remote underwater video (BRUV) surveys to analyse changes in diversity and abundance of marine fishes over a 17-year period in warming reefs that have experienced kelp loss (occurring c. 2009). Despite the loss of kelp, we found that species richness and overall abundance of fishes (measured as probability of occurrence and relative abundance), including both tropical and temperate species, increased through time. We also found dramatic shifts in the trophic composition of fish assemblages. Tropical herbivorous fish increased most markedly through time, and temperate-associated planktivores were the only group that declined, a potential consequence of tropicalization not previously identified. At the species level, we identified 22 tropical and temperate species from four trophic guilds that significantly increased in occurrence, while only three species (all temperate associated) declined. Morphological trait space models suggest increases in fish diversity and overall occurrence are unlikely to be driven by uniqueness of traits among tropical range expanders. Our results show more winners than losers and suggest that pathways of energy flow will change in tropicalized systems, as planktonic inputs become less important and a higher proportion of algal productivity gets consumed locally by increasingly abundant herbivores.

Isolated reefs support stable fish communities with high abundances of regionally fished species.

Anthropogenic impacts at isolated and inaccessible reefs are often minimal, offering rare opportunities to observe fish assemblages in a relatively undisturbed state. The remote Rowley Shoals are regarded as one of the healthiest reef systems in the Indian Ocean with demonstrated resilience to natural disturbance, no permanent human population nearby, low visitation rates, and large protected areas where fishing prohibitions are enforced. We used baited remote underwater video systems (BRUVS) to quantify fish assemblages and the relative abundance of regionally fished species within the lagoon, on the slope and in the mesophotic habitat at the Rowley Shoals at three times spanning 14 years and compared abundances of regionally fished species and the length distributions of predatory species to other isolated reefs in the northeast Indian Ocean. Fish assemblage composition and the relative abundance of regionally fished species were remarkably stable through time. We recorded high abundances of regionally fished species relative to other isolated reefs, including globally threatened humphead Maori wrasse (Cheilinus undulatus) and bumphead parrotfish (Bolbometopon muricatum). Length distributions of fish differed among habitats at the Rowley Shoals, suggesting differences in ontogenetic shifts among species. The Cocos (Keeling) Islands typically had larger‐bodied predatory species than at the Rowley Shoals. Differences in geomorphology, lagoonal habitats, and fishing history likely contribute to the differences among remote reefs. Rowley Shoals is a rare example of a reef system demonstrating ecological stability in reef fish assemblages during a time of unprecedented degradation of coral reefs.