Belowground Community Composition Research Articles

Protecting nature's most effective carbon sink: an important role for fungi in peatlands.

This article is a Commentary on Shao et al. (2023), 238: 80–95.

The iDiv Ecotron-A flexible research platform for multitrophic biodiversity research.

Across the globe, ecological communities are confronted with multiple global environmental change drivers, and they are responding in complex ways ranging from behavioral, physiological, and morphological changes within populations to changes in community composition and food web structure with consequences for ecosystem functioning. A better understanding of global change‐induced alterations of multitrophic biodiversity and the ecosystem‐level responses in terrestrial ecosystems requires holistic and integrative experimental approaches to manipulate and study complex communities and processes above and below the ground. We argue that mesocosm experiments fill a critical gap in this context, especially when based on ecological theory and coupled with microcosm experiments, field experiments, and observational studies of macroecological patterns. We describe the design and specifications of a novel terrestrial mesocosm facility, the iDiv Ecotron. It was developed to allow the setup and maintenance of complex communities and the manipulation of several abiotic factors in a near‐natural way, while simultaneously measuring multiple ecosystem functions. To demonstrate the capabilities of the facility, we provide a case study. This study shows that changes in aboveground multitrophic interactions caused by decreased predator densities can have cascading effects on the composition of belowground communities. The iDiv Ecotrons technical features, which allow for the assembly of an endless spectrum of ecosystem components, create the opportunity for collaboration among researchers with an equally broad spectrum of expertise. In the last part, we outline some of such components that will be implemented in future ecological experiments to be realized in the iDiv Ecotron.

Aboveground community composition and soil moisture play determining roles in restoring ecosystem multifunctionality of alpine steppe on Qinghai-Tibetan Plateau

Alpine steppe is one of the most important grassland ecosystems on Qinghai-Tibetan Plateau (QTP), which has been greatly degraded in past decades. However, few studies have paid attention to the ecosystem multifunctionality (EMF) of restored degraded alpine steppes. Four treatments of alpine steppes (degraded alpine steppes, cultivated alpine steppes, fenced alpine steppes and intact alpine steppes) were investigated to explore the effect of treatment, biotic (above- and belowground community composition) and abiotic factors (pH and soil moisture) on restoring nine ecosystem functions (above- and belowground plant biomass, plant nitrogen content, soil organic carbon, soil nitrogen, soil phosphorus, soil microbial biomass carbon, microbial biomass nitrogen and microbial biomass phosphorus) and EMF of alpine steppe ecosystem in Madoi County of Qinghai Province, China. Our results showed that both grassland cultivation and fencing significantly promoted EMF of the degraded alpine steppes. Aboveground plant community composition was more significantly correlated with EMF of the alpine steppes than belowground soil community composition in the process of ecological restoration. Combining abiotic factors with biotic factors could improve the ability to explain EMF than biotic factors alone. Overall, aboveground community composition and soil moisture played determining roles in restoring EMF of alpine steppes.

Linking intraspecific variation in plant chemical defence with arthropod and soil bacterial community structure and N allocation

AimsWe tested whether chemical content of individual Tansy plants influences aboveground arthropod and belowground soil microbial community composition.MethodsWe use Tansy chemical defence composition as focus for our analysis, given that changes in chemical defence are a dominant mechanism expected to modify aboveground and belowground community composition and nutrient cycling. Detailed assessment of arthropod food webs were made on tansy chemotypes. Next generation soil DNA analyses were used to assess soil bacterial community.ResultsTansy plants defended by Camphor and Borneol had higher total soil bacterial diversity than control plants (soils under non-Tansy plants) and Tansy chemotypes containing high concentrations of Thujon. Furthermore, the frequency of bacterial genera with a significant role in litter mineralization processes decreased with time in soil associated with Camphor and Borneol chemotypes, indicative of complete microbial decomposition and mineralization of plant material. No such changes occurred in soils associated with Thujon chemotypes. Thujon plants had fewer aphids, ladybirds, spiders, and Orius sp. than other chemotypes.ConclusionsOur experiments revealed that Thujon chemotypes had different associated aboveground arthropod and belowground soil microbial communities than Camphor or Borneol chemotypes. The common qualitative response between aboveground and belowground communities to Tansy plant defense is consistent with our hypothesis and extensive literature on plant defense and aboveground and belowground feedbacks.

Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long‐term biodiversity experiment

Soil microbes are known to be key drivers of several essential ecosystem processes such as nutrient cycling, plant productivity and the maintenance of plant species diversity. However, how plant species diversity and identity affect soil microbial diversity and community composition in the rhizosphere is largely unknown. We tested whether, over the course of 11years, distinct soil bacterial communities developed under plant monocultures and mixtures, and if over this time frame plants with a monoculture or mixture history changed in the bacterial communities they associated with. For eight species, we grew offspring of plants that had been grown for 11years in the same field monocultures or mixtures (plant history in monoculture vs. mixture) in pots inoculated with microbes extracted from the field monoculture and mixture soils attached to the roots of the host plants (soil legacy). After 5months of growth in the glasshouse, we collected rhizosphere soil from each plant and used 16S rRNA gene sequencing to determine the community composition and diversity of the bacterial communities. Bacterial community structure in the plant rhizosphere was primarily determined by soil legacy and by plant species identity, but not by plant history. In seven of the eight plant species the number of individual operational taxonomic units with increased abundance was larger when inoculated with microbes from mixture soil. We conclude that plant species richness can affect below-ground community composition and diversity, feeding back to the assemblage of rhizosphere bacterial communities in newly establishing plants via the legacy in soil.

Compensatory mechanisms of litter decomposition under alternating moisture regimes in tropical rice fields

A conversion from permanently flooded rice cropping systems to crop rotations that include non-flooded upland crops is heavily promoted in tropical regions to meet the challenges of sustainable food production while reducing water consumption and trace gas emissions. Shorter periods of flooding and manipulation of fertilizer inputs affect belowground community composition, biomass and functioning. However, there have been no previous studies of how such shifts in rice field management might affect soil biota and decomposition. Our objective was to examine how crop diversification, which demands different moisture regimes and nitrogen inputs, influences belowground invertebrate assemblages and their contribution to the decomposition of crop residues.We conducted a litterbag experiment in lowland paddy fields at the experimental field sites of the DFG-ICON project (Laguna, the Philippines) that were either continuously flooded, had seasonally alternating wet and dry periods, or were continuously dry. Additionally, subplot treatments within these crop rotations included different N fertilizer management practices. At a total of 36 plots we used litterbags with two different mesh sizes to assess decomposition with and without fauna over a period of 72days. Furthermore, we sampled soil microfauna and mesofauna in both the wet (rainy) and dry seasons.Although we found no correlation between faunal abundance and the contribution by invertebrates to rice straw decomposition, we found that soil water content was the decisive factor determining the activity of decomposer invertebrates as well as the composition and abundance of the soil fauna in fields with alternating cropping regimes. The impact of invertebrates on rice straw decomposition was higher under anaerobic than aerobic soil conditions which compensated for reduced microbial decay rates during periods of flooding. In contrast, microbial decomposition rates were higher under aerobic conditions, whereas invertebrates had no apparent effects on the mass loss of rice straw despite their higher abundance in dry fields. Our results demonstrate that invertebrates are essential for the effective decay of rice straw residues under flooded soil conditions, and therefore play an important role in supplying nutrients to flooded rice.

Effects of soil organisms on aboveground multitrophic interactions are consistent between plant genotypes mediating the interaction

Belowground communities can affect interactions between plants and aboveground insect communities. Such belowground–aboveground interactions are known to depend on the composition of belowground communities, as well as on the plant species that mediates these interactions. However, it is largely unknown whether the effect of belowground communities on aboveground plant–insect interactions also depends on genotypic variation within the plant species that mediates the interaction. To assess whether the outcome of belowground–aboveground interactions can be affected by plant genotype, we selected two white cabbage cultivars [Brassica oleracea L. var. capitata (Brassicaceae)]. From previous studies, it is known that these cultivars differ in their chemistry and belowground and aboveground multitrophic interactions. Belowground, we inoculated soils of the cultivars with either nematodes or microorganisms and included a sterilized soil as a control treatment. Aboveground, we quantified aphid [Brevicoryne brassicae (L.) (Hemiptera: Aphididae)] population development and parasitoid [Diaeretiella rapae (McIntosh) (Hymenoptera: Braconidae)] fitness parameters. The cultivar that sustained highest aphid numbers also had the best parasitoid performance. Soil treatment affected aphid population sizes: microorganisms increased aphid population growth. Soil treatments did not affect parasitoid performance. Cultivars differed in their amino acid concentration, leaf relative growth rate, and root, shoot, and phloem glucosinolate composition but showed similar responses of these traits to soil treatments. Consistent with this observation, no interactions were found between cultivar and soil treatment for aphid population growth or parasitoid performance. Overall, the aboveground community was more affected by cultivar, which was associated with glucosinolate profiles, than by soil community.

Soil fungal abundance and diversity: another victim of the invasive plant Centaurea maculosa

Interactions between plants and soil microbes are important determinants of both above- and belowground community composition, and ultimately ecosystem function. As exotic plants continue to invade and modify native plant communities, there has been increasing interest in determining the influence of exotic invasives on native soil microbial communities. Here, using highly sensitive molecular techniques, we examine fungal abundance and diversity in the soil surrounding a particularly aggressive invasive plant species in North America, Centaurea maculosa Lam. In mixed stands, we show that this invasive weed can alter the native fungal community composition within its own rhizosphere and that of neighboring native plants. At higher densities, the effect of C. maculosa on native soil fungal communities was even greater. Our results demonstrate that this invasive weed can have significant effects not only on visible aboveground biodiversity but also on the native soil microbial community that extends beyond its rhizosphere.

Successional trajectories of soil nematode and plant communities in a chronosequence of ex-arable lands

Conversion of arable land into semi-natural grassland or heath land is a common practice for restoring and conserving plant diversity. However, little is known about the effectiveness of land conversion for restoring and conserving taxonomic and functional diversity in the soil. We studied soil nematode community development in a chronosequence of abandoned fields and related this to plant community development. The taxonomic and functional composition of the soil nematode community was analyzed to detect changes in soil food web structure, using semi-natural sites and theoretical plant and soil communities as references.While plant communities clearly developed towards the semi-natural references, there was less direction in succession of nematode taxa. The number of fungal feeding nematodes increased after land abandonment. Numbers of omni-carnivorous nematodes expanded only during the first years, after which there were no substantial changes for the next three decades. Plant communities on the ex-arable fields developed towards the theoretical reference plant associations Galio hercynici-Festucetum ovinae and Genisto anglicae-Callunetum. Nematode communities developed away from a theoretical community indicative of arable land, but there was no clear development towards a theoretical (semi-)natural reference. Our results show that restoration and conservation of plant communities is of limited indicative value for developments belowground: successful restoration of plant diversity does not necessarily imply successful restoration of belowground diversity. Assessing the impact of conservation measures on restoring soil biodiversity requires information on belowground community composition of (semi-)natural areas in order to establish proper references for restoration sites.