Composition Of Assemblages Research Articles

Rapid change in plankton community structure during spring along the eastern Beagle Channel

In November 2019, a first joint Chilean–Argentinian research cruise was conducted along the eastern section of the Beagle Channel (BC). Here we present the results of the microbial plankton (2–200 μm cell size) abundance and composition analyses in relation to water masses and environmental variables, along a longitudinal transect characterized by contrasting hydrology. Plankton samples were analyzed within the photic zone along the channel and at two fixed stations during two short time series (a first one of 30 and a second one of 42 h). Results revealed a spatial zonation in the composition and structure of the plankton assemblages, related to bathymetry, water temperature and nutrient availability but also, a small-scale temporal variability due mainly to a rise in air and water temperature. The inner (westernmost) and outer sectors of the sampled area, west and east of Mackinlay Strait, respectively, were characterized by low plankton abundances, mostly dominated by nanoflagellates and some large diatoms. In contrast, the easternmost sector of BC, showed the highest total cell abundances, displaying a high diversity of small and large diatoms. Notably, in the inner BC (fixed station F1), chlorophyll-a (chl-a) concentrations almost doubled in 24 h, along with an increase in total plankton abundance and the dominance of small diatoms and nanoflagellates. Rapid changes in plankton relative abundance were also observed east to Mackinlay Strait. This highlights the large spatial (km) and temporal (hours to days) plankton heterogeneity along the eastern section of the BC, scales which should be considered for further sampling strategies.

Range extension of invasive Cancer irroratus and native Carcinus maenas polewards in the Ascophyllum-dominated intertidal zone in north-west Iceland

Abstract The rocky intertidal zone of sheltered shores in Breiðafjörður, north-west Iceland is dominated by monospecific stands of canopy-forming brown algae Ascophyllum nodosum, which provide habitat for mobile organisms and has been subjected to long-standing rotational harvesting. We investigated the assemblage composition of little-studied mobile brachyuran crabs in this area, to track distributional shifts in a native species responding to climate change and extent of occupancy of the intertidal by a primarily subtidal invasive non-native species. Potential interactive effects of seaweed harvesting were explored. Breiðafjörður was compared with two reference sites in Faxaflói, south-west Iceland. The study revealed clear poleward expansion of the native European green crab Carcinus maenas in the region, displacing the native spider crab Hyas araneus particularly at mid-shore levels. The invasive non-native Atlantic rock crab Cancer irroratus had negligible occupancy in the intertidal zone, indicating limited effects on the intertidal crab assemblage, composition, and abundance. The current harvesting regime of A. nodosum in Breiðafjörður did not affect the composition and abundance of the brachyuran crab assemblage in the rocky intertidal zone. H. araneus is likely being squeezed by displacement subtidally by C. irroratus, and intertidally by C. maenas. Overall, we provide insights into the potential interactions between climate change, invasive species, and human activities in the rocky intertidal zone.

Litho- and biostratigraphy of the Holocene sediments in the southern part of Lake Ladoga

We present the results of study sediment core, taken in the southern part of Lake Ladoga at the depth of 44 m. The sediments are gray silt with total thickness of 0.8 m. Diatom and loss-on-ignition and grain-size analyzes and radiocarbon dating were carried out. The retrieved sediments formed during the Holocene starting from the regression of the Ancylus Lake at the Baltic ca. 10,200 cal. BP. Changes in the composition of diatom assemblages and the dynamics of organic accumulation correspond to the typical scenarios that we recorded in the Holocene sediments in the central part of Lake Ladoga. No sedimentary hiatuses were recorded. Thus, it has been established that aquatic, relatively deep-water conditions existed in this part of the Ladoga basin starting from the Early Holocene with the accumulation of fine-grained sediments.

Determinants of anuran assemblages in Amazonian White-sand Ecosystems.

Amazonian white-sand ecosystems have predominantly sandy soils and a high amount of endemism, and several species found within them are adapted to long periods of drought. However, little is known about the variation in the structure of anuran assemblages in these ecosystems. Considering that most species are not uniformly distributed in heterogeneous landscapes, we tested the hypothesis that anuran assemblage variation in white-sand ecosystems is related to changes in vegetation structure. Specifically, we focused on a heterogeneous patch of white-sand ecosystems of the central Amazon and evaluated whether vegetation structure and soil characteristics, including root depth, influence the richness, abundance, and composition of anuran assemblages. Our results showed that low amounts of clay in the soil play an important role in structuring vegetation in these ecosystems, and these are the main factors that organize anuran assemblages. The Campinaranas close to the water bodies have a high species richness, while Campina landscapes limit the occupation of most of species. Our findings indicate that anurans undergo environmental filtering in white-sand ecosystems and are organized into hierarchical subgroups, in which only species with specialized reproduction can successfully occupy the most water-restricted environments.

Feet on the ground: Marine archaeomalacology resources during the Mesolithic-Neolithic transition in the Iberian Peninsula

The Iberian Peninsula is the ideal setting for the study of the use of marine resources in the Mesolithic and Neolithic periods. Previous studies have focused on specific geographical areas and on a single chronological period. Instead, we offer here a synthesis of the peninsula covering a broad period of time, thus allowing a study of the role of marine resources in the Neolithisation process. Published data on the exploitation of marine molluscs from 59 archaeological levels, close to the coast and dated between 10,400 and 4650 cal BP, in the Iberian Peninsula are reviewed in order to examine the change that occurred in the consumption of marine resources following the introduction of domestic plants and animals. The analysis of the composition and diversity of assemblages collected at each site has allowed us to identify specialisation in the management strategy of marine molluscs during the Neolithic. Regional variability in the diversity of species collected, particularly in the Cantabrian region, where there is continuity in the management of molluscs between the Mesolithic and Neolithic periods, could be linked to the pace at which agriculture and animal husbandry were adopted. In short, together with environmental factors, the establishment of farming practices may have had a slight impact on the specialisation in the management of coastal environments.

Recent near-shore ostracod fauna of the Caspian Sea

The work is based on the E.A.Gofman’s collection of recent ostracods. Here we present summarized data on our results of studying 45 near-shore sampling sites and previously published data, which were the first one to investigate the distribution of recent ostracods in the Caspian Sea and to discuss the influence of such factors as bottom sediments type, water temperature and salinity. Overall, distribution of the ostracods in the Caspian Sea shows a remarkable depth control. The near-shore ostracod assemblage of the Caspian Sea indicates shallow water conditions. Predominant species tolerates temperature and salinity seasonal changes. In northern area assemblage is dominated by Cyprideis torosa and contains abundant euryhaline species tolerant to reduced salinity ranges reflecting the river influence, significant temperature changes and unstable hydrological regime. In the Central and Southern Caspian Sea, the assemblage is mostly represented by the Tyrrhenocythere amnicola donetziensis and other stenohaline species. The analysis of the recent near-shore ostracods of the Caspian Sea allows to conclude that salinity, along with water depth, are the leading factors determining the composition of ostracod assemblages.

Variáveis ambientais como preditoras da assembleia de peixes em sistemas aquáticos semiáridos

Abstract Aim To understand the distribution of fish species and their use of habitat, a range of environmental variables were evaluated as predictors of fish assemblage composition and richness in tropical semiarid aquatic systems. Methods We surveyed the species composition of fish assemblages in semiarid aquatic systems and established their degree of association with the structure of the aquatic habitat. Sites consisted of stream reaches with surface water flow, isolated temporary pools, and man-made reservoirs. Fish sampling was conducted on four occasions during the wet (April and June 2006) and dry seasons (September and December 2006). The correlation between richness and abundance with the habitat structure was evaluated using stepwise multiple regression. Patterns of variation in fish assemblage composition across sites were evaluated using Nonmetric Multidimensional Scaling, and the Indicator Species Analysis was used to determine which species were significant indicators of sites. To establish multivariate correlations and test the hypothesis of local fish composition being associated with the environmental variables we used a Canonical Correspondence Analysis. Results Morphometric variables, stream reach width, stream length and elevation explained 75.6% of the variation in fish richness. Macrophyte cover and overhanging vegetation added to the predictive power of the model equation, where the final model explained 86.9% of the variation in fish richness. Canonical Correspondence Analysis showed a significant relationship between fish composition data and site morphology (altitude, bank slope and littoral depth). Among the water quality, habitat composition and substrate variables, temperature, sand, and gravel showed higher correlation with the CCA axes. Conclusions These results indicated that fish communities assume different structures and compositions across different habitat types following the environmental heterogeneity in dryland aquatic systems.

Meiofauna at a tropical sandy beach in the SW Atlantic: the influence of seasonality on diversity.

Sandy beaches are dynamic environments housing a large diversity of organisms and providing important environmental services. Meiofaunal metazoan are small organisms that play a key role in the sediment. Their diversity, distribution and composition are driven by sedimentary and oceanographic parameters. Understanding the diversity patterns of marine meiofauna is critical in a changing world. In this study, we investigate if there is seasonal difference in meiofaunal assemblage composition and diversity along 1 year and if the marine seascapes dynamics (water masses with particular biogeochemical features, characterized by temperature, salinity, absolute dynamic topography, chromophoric dissolved organic material, chlorophyll-a, and normalized fluorescent line height), rainfall, and sediment parameters (total organic matter, carbonate, carbohydrate, protein, lipids, protein-to-carbohydrate, carbohydrate-to-lipids, and biopolymeric carbon) affect significatively meiofaunal diversity at a tropical sandy beach. We tested two hypotheses here: (i) meiofaunal diversity is higher during warmer months and its composition changes significatively among seasons along a year at a tropical sandy beach, and (ii) meiofaunal diversity metrics are significantly explained by marine seascapes characteristics and sediment parameters. We used metabarcoding (V9 hypervariable region from 18S gene) from sediment samples to assess the meiofaunal assemblage composition and diversity (phylogenetic diversity and Shannon's diversity) over a period of 1 year. Meiofauna was dominated by Crustacea (46% of sequence reads), Annelida (28% of sequence reads) and Nematoda (12% of sequence reads) in periods of the year with high temperatures (>25 °C), high salinity (>31.5 ppt), and calm waters. Our data support our initial hypotheses revealing a higher meiofaunal diversity (phylogenetic and Shannon's Diversity) and different composition during warmer periods of the year. Meiofaunal diversity was driven by a set of multiple variables, including biological variables (biopolymeric carbon) and organic matter quality (protein content, lipid content, and carbohydrate-to-lipid ratio).

Evolution of Lake Ladoga as recorded in litho- and biostratigraphy of a small coastal lake

The study is focused on the litho- and biostratigraphic record of Lake Lavijarvi, presently a small lake in the closest vicinity from the Ladoga coast, and formerly a sheltered bay of Lake Ladoga. Several stages of its evolution were revealed that are characterized with different organic matter content in the sediments, diatom assemblages composition and abundances of siliceous microalgae remains. It has been demonstrated that at the earlier stages, the environments in the basin of Lake Lavijarvi were similar to those in Lake Ladoga. Later in the Holocene, local factors became more pronounced, and the conditions different from those in the open-water part of Lake Ladoga established in the basin of Lake Lavijarvi. The regression of Lake Ladoga resulted in the isolation of Lake Lavijarvi and the beginning of its small-lake stage after ca. 3900 cal. BP.

Putting eDNA to the test: A field comparison of eDNA metabarcoding to established protocols for assessing biodiversity in Missouri's Ozark Highland streams

AbstractAquatic biodiversity monitoring to inform conservation and management efforts in‐stream systems has increasingly begun to incorporate environmental DNA (eDNA)‐based sampling methods. We conducted a comparison of eDNA metabarcoding to a traditional protocol of combined seining and electrofishing methods to assess fish biodiversity of wadeable stream sites in six separate drainages in the Ozark Highlands of Missouri (USA). The study further focused on the headwaters of the Meramec River, which included 11 sites and seasonal sampling (summer and winter). We compared estimates of diversity across sampling methods, assessed the influences of water flow (depth, velocity, and discharge) and season, and tested the effects of sampling method and site locality on fish assemblage composition. eDNA sampling detected approximately double the number of species compared to traditional methods, providing higher diversity estimates while maintaining the relative ranking of sites. eDNA detection probabilities were positively associated with stream depth and velocity and were generally higher in summer than in winter but not for all species. Estimated species richness was positively associated with discharge for both methods but the relationship was stronger with eDNA sampling. Assemblage differences between tributary and mainstem sites were attributable to a small number of species that were found predominantly in one stream size category or the other, indicating that eDNA was sensitive to within‐drainage assemblage structure relationships. We highlight improved species detection, a more comprehensive understanding of assemblage structural dynamics, and the potential ability to integrate data across sampling methods as important benefits that encourage the use of eDNA metabarcoding as a primary collection method in future stream biodiversity assessment and monitoring programs.

Contrasting patterns of decadal stability for shallow water sponge boulder assemblages and subtidal rocky cliffs at Lough Hyne, Ireland

Abstract Lough Hyne (LH) Marine Nature Reserve in Ireland is a globally recognised biodiversity hotspot that hosts mesophotic-like communities in shallow water, however, major changes have occurred to most of the rocky cliff (>6 m) communities in one or more events between 2010 and 2015. To provide insights into these changes, we compared the sponge assemblage composition on the undersides of different sized, shallow (<1 m) subtidal boulders between 2000 and 2022 at two sites in LH. We also measured sponge species richness at seven sites in 2018. We found that unlike earlier reports from the deeper subtidal reef sponge assemblages, there was no evidence for changes in sponge assemblage composition on the undersides of boulders at either site. We also found high levels of sponge species richness at all seven sites sampled in 2018. We did find differences in sponge assemblages between sites and for different boulder sizes, which we propose is a result of site-specific environmental conditions and disturbance and size–area relationships. Since we found no changes in the shallow subtidal sponge assemblages between 2000 and 2022, our results support the hypothesis that changes to the deeper subtidal sponge assemblages at LH are driven by local processes associated with deeper water in LH, potentially related to the seasonal oxythermocline that forms within LH. Given the national and global importance of LH, understanding the drivers of change is critical to determine if management actions can prevent any future alterations to the LH sponge assemblages and support wider mesophotic community management.

Nuanced impacts of the invasive aquatic plant Crassula helmsii on Northwest European freshwater macroinvertebrate assemblages

Invasive alien species are considered one of the greatest threats to global biodiversity, and are particularly problematic in aquatic systems. Given the foundational role of macrophytes in most freshwaters, alien aquatic plant invasions may drive strong bottom-up impacts on recipient biota. Crassula helmsii (New Zealand pygmyweed) is an Australasian macrophyte, now widespread in northwest Europe. Crassula helmsii rapidly invades small lentic waterbodies, where it is generally considered a serious threat to native biodiversity. The precise ecological impacts of this invasion remain poorly understood, however, particularly with respect to macroinvertebrates, which comprise the bulk of freshwater faunal biodiversity. We conducted a field study of ponds, ditches and small lakes across the core of C. helmsii's invasive range (United Kingdom, Belgium and the Netherlands), finding that invaded sites had higher macroinvertebrate taxon richness than uninvaded sites, and that many infrequent and rare macroinvertebrates co-occurred with C. helmsii. Alien macroinvertebrates were more abundant in C. helmsii sites, however, particularly the North American amphipod Crangonyx pseudogracilis. At the order level, water beetle (Coleoptera) richness and abundance were higher in C. helmsii sites, whereas true fly (Diptera) abundance was higher in uninvaded sites. Taxonomic and functional assemblage composition were both impacted by invasion, largely in relation to taxa and traits associated with detritivory, suggesting that the impacts of C. helmsii on macroinvertebrates are partly mediated by the availability and palatability of its detritus. The nuanced effects of C. helmsii on macroinvertebrates found here should encourage further quantitative research on the impacts of this invasive plant, and perhaps prompt a more balanced re-evaluation of its effects on native aquatic macrofauna.

Exploring dynamics of floristic composition in Mediterranean grasslands: a case study from Sardinia, Italy

Mediterranean grasslands stand out as biodiversity hotspots due to their inclusion of diverse habitats that foster a remarkable range of biological diversity, characterized by inter-annual variability of floristic composition. This study aims to assess the inter-annual dynamics of the floristic composition in a grassland within a typical silvopastoral system in the Mediterranean basin, within the framework of rainfall variability. The study was performed on a farm representative of Mediterranean silvopastoral systems in Central-Western Sardinia (Italy). Vegetation surveys started in the spring of 2018 and concluded in the spring of 2022. They were conducted annually in the spring (S) and winter (W) seasons, using the point quadrat method along eight permanent transects. The dynamics of floristic composition were compared within and between years in terms of variability of specific percentage contribution (CSP) of each plant species. The results highlighted substantial differences in the composition of plant assemblages between the two seasons (W vs S) and between surveys within each season for all a posteriori comparisons. Anthemis arvensis, Lolium rigidum, Festuca ligustica and Medicago polymorpha were the main discriminating plant species between seasons. Considering the discriminant species between the four winter surveys, we found a positive effect of August rain on Cynodon dactylonCSP and a negative one on Trifolium subterraneumCSP. Considering the spring surveys, we found a positive effect of January rain on L. rigidum and a negative effect on Plantago lanceolata. The rain affected the inter-annual dynamics of floristic composition in the Mediterranean grasslands. Other factors, such as temperature, remain to be investigated. Moreover, a more extended data series may allow us to strengthen our results.

Comparison of Abundance and Structure of Larval Fish Assemblages between Autumn and Spring in the Waters Surrounding Taiwan Bank, Western North Pacific

The fluctuations in both time and space of larval fish assemblages in relation to hydrographic characteristics in the waters surrounding Taiwan Bank were studied in October 2021 (autumn) and March 2022 (spring). Throughout the study period, we identified a total of 149 taxa of fish larvae, encompassing 96 genera and 71 families. Engraulis japonicus, Diaphus slender type, unidentified Gobiidae, Apogon sp., unidentified Clupeidae, and Benthosema pterotum were the six dominant taxa and together constituted 47.39% of the total catch. There were no notable temporal variations observed in the abundance of fish larvae, but the species number of fish larvae was greater in spring than in autumn. Significant variations in species composition were observed between the different cruises, and the cluster analysis unveiled a distinct temporal structure of the assemblages of fish larvae. The dynamics of the prevailing currents induced by seasonal monsoons contribute significantly to the transportation of fish larvae. The distribution of fish larvae showed a good association with hydrographic characteristics, where seawater temperature and salinity emerged as the primary explanatory factors influencing the composition of larval fish assemblages in the waters surrounding Taiwan Bank. While the increased influx of nutrients from upwelling ensures abundant food availability, the hydrographic conditions may not be suitable for every fish larva.

Changes in thermal niche position and breadth of bird assemblages in Spain in relation to increasing temperatures

AbstractAimAnimal communities around the world are responding to climate change by altering their taxonomic composition, mainly through an increase in the colonisation rate of warm‐dwelling species and the local extinction of cold‐dwelling ones. We assessed whether the taxonomic composition of bird assemblages in peninsular Spain has changed in accordance with the recent increase in temperature. We also evaluated the role of species thermal affinities and population dynamics on these changes.LocationPeninsular Spain.TaxonBirds.MethodsWe compared assemblages reported in the last Spanish breeding bird atlases (1998–2002 vs. 2014–2018) in 10 × 10 km squares. We described species' thermal niches by overlaying global species breeding distributions and world temperature metrics (based on mean, minimum, maximum and range), and then aggregated them to obtain a set of community thermal indices for each assemblage (CTIs and CTR for ranges). Long‐term average temperatures and local current temperatures were related to changes in CTIs using spatial GLMMs, which considered habitat change. We identified the species most responsible for variation in assemblages and regressed species' influence on thermal affinities and population dynamics.ResultsCTIs increased with temperature and warm‐dwelling species became more prevalent to the detriment of cold‐dwelling ones. However, we found a counteracting effect of temperature and habitat. Cold‐dwelling forest species were among the most influential species, mainly through colonisation, while warm‐dwelling farmland species contributed through local extinctions (both attenuated local increases in CTI). The mean thermal breadth of assemblages (CTR) decreased with temperatures.Main conclusionsThe taxonomic composition of bird assemblages shifted in line with the main expectations due to global change (thermophilisation), mainly due to local colonisation of warm‐dwelling species, although it did not show the pattern of thermal homogenisation suggested elsewhere. Our results add further evidence of the interplay between climate warming and land‐use change in the ongoing adjustment of animal communities.

Similar functional composition of fish assemblages despite contrasting levels of habitat degradation on shallow Caribbean coral reefs.

Functional trait-based approaches provide an opportunity to assess how changes in habitat affect the structure of associated communities. Global analyses have found a similarity in the composition of reef fish functional traits despite differences in species richness, environmental regimes, and habitat components. These large-scale patterns raised the question of whether this same stability can be observed at smaller spatial scales. Here, we compared the fish trait composition and their functional diversity in two Caribbean shallow coral reefs with contrasting levels of habitat degradation: Limones (>30% cover), constituted mainly by colonies of Acropora palmata and Bonanza, a reef with extensive areas of dead Acropora structures, dominated by algae. To characterize the functional structure of fishes on each reef, we calculated the community-weighted mean trait values (CWM), functional richness, functional evenness, functional dispersion, and functional originality. Despite the differences in habitat quality, reefs exhibited a similar proportion and common structure on fish functional traits. Functional richness and functional evenness differed significantly, but functional dispersion and functional originality did not show differences between reefs. The greater niche complexity driven by the high availability of microhabitats provided by A. palmata may explain the higher functional richness in Limones, whereas the reef degradation in Bonanza may contribute to a higher functional evenness because of a similar distribution of abundance per fish trait combinations. Our results suggest that widespread degradation on Caribbean reefs has limited the type, variety, and range of traits, which could lead to a functional homogenization of fish communities even at local scales.

Changes in assemblage and functional composition of benthos in response to changes in tidal flat environments including topographic openness on islands in the Seto Inland Sea

Changes in assemblage and functional composition of benthos in response to changes in tidal flat environments including topographic openness on islands in the Seto Inland Sea

Comparisons of Twelve Freshwater Mussel Bed Assemblages Quantitatively Sampled at a 15-year Interval in the Buffalo National River, Arkansas, USA

Historically, 23 freshwater mussel species have been documented from the Buffalo National River (BNR), a 246 km, free-flowing river in northern Arkansas. The potential threats to BNR include land use/land cover changes, eutrophication, recreation, physical habitat changes, and various climate change-related effects. Twelve quantitative mussel bed sites were established and then sampled using a stratified random sampling protocol to evaluate the long-term changes between 2006 and 2020–2021 in population and assemblage characteristics. We compared (1) overall mussel bed persistence, sampling confidence levels and study-wide relative abundances, and compared species’ size and size-frequency distributions; (2) 10 overall site assemblage variables using paired t-tests; (3) site-level mean density, richness, and diversity indices using pair-wise Mann–Whitney U statistics; and (4) assemblage composition using Non-Metric Multidimensional Scaling. The major findings included the following: (1) sampling efforts based on a targeted 80% confidence level appears relatively robust, (2) BNR mussel assemblage composition and structure were relatively stable (however, small mussel bed persistence is a concern), (3) 7 of 23 sites were outliers based on freshwater mussel composition and habitat characteristics, and (4) assemblage composition changed with three species declining (Actinonaias ligamentina, Lasmigona costata, and Ptychobranchus occidentalis) and four species increasing (Cambarunio hesperus, Cyclonaias tuberculata, Eurynia dilatata, and Venustaconcha pleasii) between monitoring events.

Distribution and composition of Decapod larvae assemblages on the Berlengas archipelago and Peniche coast (western coast of Portugal)

For the first time, the decapod larval community in the Berlenga and coastal Peniche region have been investigated in detail, from a short-term time series (2015 – 2020). Sampling was conducted in two locations, at Berlengas archipelago, and near the coast, at Peniche. The communities found at both stations were revealed to be 80% different in terms of species composition, but species of Brachyura, Caridea, and Anomura were the most abundant in both locations. A marked seasonality, with abundance peaks during summer and autumn, was found for the assemblages near the coast, but absent in the assemblages of the Berlenga region. This suggests that factors other than the environmental variables examined in this study may play a crucial role in shaping the assemblages more offshore. Water temperature, upwelling index, salinity, and chlorophyll-a were the main factors dictating species abundance, especially at Peniche. This emphasizes the significant role of the Iberian upwelling productivity, which in turn influences decapod communities. Also, the progressive warming of coastal water will most likely have a negative impact on the decapod meroplanktonic life forms, with further consequences on recruitment and adult life stages.

Benthic Foraminifera as Proxies of Paleoenvironmental Changes in the Sant’Elia-Foxi Canyon (Gulf of Cagliari, Italy, Western Tyrrhenian Sea)

Marine coastal areas are highly dynamic and fragile environments characterised by a complex interplay of biological, physical, and chemical factors. These areas are also affected by anthropogenic activities with the discharge of organic and inorganic contaminants that alters the quality of the environment. In this work, the effects of anthropogenic activities (i.e., urban and industrial development) on benthic foraminifera have been investigated along the A2TM core collected from the Sant’Elia-Foxi Canyon (Gulf of Cagliari, Sardinia—western Tyrrhenian Sea). The Gulf of Cagliari has experienced intense urbanisation since the beginning of the twentieth century with the establishment of petrochemical complexes and harbour activities. The A2TM core, dating from 1907 to 2013, was analysed with an integrated approach that includes grain size, organic matter, and benthic foraminifera characterisation compared with geochemical characterisation. The variations in the composition of the benthic foraminiferal assemblages and the Margalef diversity index are related to the altered environmental conditions that reflect the historical development of the area and to the land-based activities surrounding the Gulf of Cagliari. The statistical analysis identifies two main intervals (i.e., the years 1907–1986 and 1986–2013) that are typified by different benthic foraminiferal assemblages and diversity values. Accordingly, the increases in organic matter content and both organic and inorganic contaminants are well mirrored by a major drop in foraminiferal diversity after 1973 and a major foraminiferal turnover after 1989. The composition of the benthic foraminiferal assemblages in the uppermost part of the core (i.e., 1989–2013) might suggest a lowering of the oxygen availability at the seafloor. These changes might be related to the increase in organic matter and the silty fraction in the same interval likely triggered by damming on land and wetland reclamation.