Abstract Complex principal component analysis is applied to data from three laboratory experiments of flow over two-wave sinusoidal bottom topography in a thermally driven, rotating annulus of fluid. The experiments are conducted at the same imposed temperature contrast (ΔT) and at three different rotation rates (Ω). In each case, the intensity of the wave activity is maximum downstream of the two topographic ridges. The analysis, however, reveals a fundamental difference in the behavior of the waves at lower rotation rates than at the highest rotation rate. At the lower Ω's, the baroclinic waves travel over the topographic ridges with diminished intensity and amplify on the other side of each ridge, with the result that the flows downstream of the two ridges are coherent. At the largest Ω, at which the Rossby number, Ro, is very small and the friction parameter, r = E½/Ro (where E is proportional to the Ekman number), is rather large, the waves downstream of each ridge are decoupled from those downstream...