Growth factors affect farm owners, environmental conditions, nutrient adaptation, and resistance to chrysanthemum diseases. Healthy chrysanthemum plants can overcome all these factors and provide farms owners with a lot of income. Chrysanthemum white rust disease is a common disease that occurs worldwide; if not treated promptly, the disease spreads to the entire leaf surface, causing the plant’s leaves to burn, turn yellow, and fall prematurely, reducing the photosynthetic performance of the plant and the appearance of the flower branches. In Korea, chrysanthemum white rust disease most often occurs during the spring and autumn seasons, when temperature varies during the summer monsoon, and when ventilation is poor in the winter. Deep neural networks were used to determine healthy and unhealthy plants. We applied the Raspberry Pi 3 module to recognize white rust and test four neural network models. The five main deep neural network processes utilized for a dataset of non-diseased and white rust leaves include: (1) data collection; (2) data partitioning; (3) feature extraction; (4) feature engineering; and (5) prediction modeling based on the train–test loss of 35 epochs within 20 min using Linux. White rust recognition is performed for comparison using four models, namely, DenseNet121, ResNet50, VGG-19, and MobileNet v2. The qualitative white rust detection system is achieved using a Raspberry Pi 3 module. All models accomplished an accuracy of over 94%, and MobileNet v2 achieved the highest accuracy, precision, and recall at over 98%. In the precision comparison, DenseNet121 obtained the second highest recognition accuracy of 97%, whereas ResNet50 and VGG-19 achieved slightly lower accuracies at 95% and 94%, respectively. Qualitative results were obtained using the Raspberry Pi 3 module to assess the performance of the four models. All models had accuracies of over 91%, with ResNet50 obtaining a value of 91%, VGG19 reaching a value of 93%, and DenseNet121 reaching 95%. The highest accuracy rate was 97% (MobileNet v2). MobileNet v2 was validated as the most effective model to recognize white rust in chrysanthemums using the Raspberry Pi 3 system. Raspberry Pi 3 module was considered, in conjunction with the MobileNet v2 model, to be the best application system. MobileNet v2 and Raspberry Pi require a low cost for the recognition of chrysanthemum white rust and the diagnosis of chrysanthemum plant health conditions, reducing the risk of white rust disease and minimizing costs and efforts while improving floral production. Chrysanthemum farmers should consider applying the Raspberry Pi module for detecting white rust, protecting healthy plant growth, and increasing yields with low-cost.