Abstract Background and Aims Skin and muscle sodium accumulation has been demonstrated in CKD patients and may contribute to progression of the disease. Various methods are available for measuring tissue sodium content. However, the accuracy and reproducibility of these methods remain unknown. Dry ashing is the most used digestion method, but is expensive, time consuming and has a risk of incomplete digestion. This study compared microwave digestion, dry ashing, and two electrolyte quantification methods for quantifying tissue sodium and potassium. Method We compared microwave digestion (Ethos LEAN Compact Microwave Digestion System, Milestone SRL) and dry ashing (Nabertherm S27) as sample preparation methods, and flame atomic absorption spectroscopy (FAAS, Model 425 Flame Photometer, Sherwood Scientific) and inductively coupled plasma optical emission spectrometry (ICP-OES, Varian 720-ES, Varian Inc.) as electrolyte quantification methods. Skin and muscle samples were obtained from rats and mice, and human skin samples were used. Tissues biopsies were cut in three pieces and digested separately. The methods were compared using interclass correlation coefficient (ICC) and Bland-Altman analysis. The third piece of tissue was microwave-digested by another operator to test inter-operator reproducibility by calculating the ICC and absolute overall mean difference. Results With microwave digestion and FAAS median (IQR) human skin concentration was 114.8 (99.2-157.0, n = 12) mmol/L, confirming tissue sodium storage. When including all tissues, FAAS and ICP-OES showed high agreement for sodium (ICC 0.98, bias –0.00008 mmol/g, n = 141 and potassium (ICC 0.98, bias –0.005 mmol/g, n = 141). Microwave digestion and ashing showed agreement for sodium (ICC 0.93, bias –0.002 mmol/g, n = 61) and potassium (ICC 0.93, bias –0.02 mmol/g, n = 61). The inter-operator agreement was good for sodium (ICC 0.95, absolute mean difference (SD) 0.044 mmol/g (0.073), n = 70) and potassium (ICC 0.96, absolute mean difference (SD) 0.031 mmol/g (0.032), n = 70). Conclusion Microwave digestion with FAAS is a reliable and consistent method for sodium and potassium trace analysis in animal and human tissues compared to ashing and ICP-OES, respectively. This method showed more quantification of cations than the most frequently reported method, representing an easier, and less time-consuming way to quantify tissue sodium in CKD research.