Ecological Communities Research Articles

ФРАКЦИОНИРОВАНИЕ ПЛАНКТОНА С ПОМОЩЬЮ ПОСЛЕДОВАТЕЛЬНОЙ ФИЛЬТРАЦИИ И ПОСТРОЕНИЕ ПИРАМИД БИОРАЗНООБРАЗИЯ

Lotka-Volterra predator-prey models are used to study community ecology, but their ability to generate ecological pyramids compared to field data has not been investigated in detail. In this paper, agent-based modeling (ABM) was used instead of systems of ordinary differential equations (ODE). It was shown that the two-component producer-consumer system is unstable, whereas the three-component system with consumers of the 1st and 2nd order is stable under prolonged simulation. Time slices as the program progresses can generate both ecological pyramids and cascades. Simulation results are consistent with experiments on separation of the Black Sea plankton from the area of Cape Fiolent (Crimea) into fractions ranging in size from 2 mm to 2 microns. Although biodiversity in individual samples at different points in time as well as abundance vary widely, both predictably decline with rising trophic levels in cases where the number of tests increases over time.

Interspecific transfer of genetic information through polyploid bridges

Hybridization blurs species boundaries and leads to intertwined lineages resulting in reticulate evolution. Polyploidy, the outcome of whole genome duplication (WGD), has more recently been implicated in promoting and facilitating hybridization between polyploid species, potentially leading to adaptive introgression. However, because polyploid lineages are usually ephemeral states in the evolutionary history of life it is unclear whether WGD-potentiated hybridization has any appreciable effect on their diploid counterparts. Here, we develop a model of cytotype dynamics within mixed-ploidy populations to demonstrate that polyploidy can in fact serve as a bridge for gene flow between diploid lineages, where introgression is fully or partially hampered by the species barrier. Polyploid bridges emerge in the presence of triploid organisms, which despite critically low levels of fitness, can still allow the transfer of alleles between diploid states of independently evolving mixed-ploidy species. Notably, while marked genetic divergence prevents polyploid-mediated interspecific gene flow, we show that increased recombination rates can offset these evolutionary constraints, allowing a more efficient sorting of alleles at higher-ploidy levels before introgression into diploid gene pools. Additionally, we derive an analytical approximation for the rate of gene flow at the tetraploid level necessary to supersede introgression between diploids with nonzero introgression rates, which is especially relevant for plant species complexes, where interspecific gene flow is ubiquitous. Altogether, our results illustrate the potential impact of polyploid bridges on the (re)distribution of genetic material across ecological communities during evolution, representing a potential force behind reticulation.

Spatiotemporal Mechanisms of the Coexistence of Reintroduced Scimitar-Horned Oryx and Native Dorcas Gazelle in Sidi Toui National Park, Tunisia.

Examining the distribution patterns and spatiotemporal niche overlap of sympatric species is crucial for understanding core concepts in community ecology and for the effective management of multi-species habitats within shared landscapes. Using data from 26 camera-traps, recorded over two years (December 2020-November 2022), in Sidi Toui National Park (STNP), Tunisia, we investigate habitat use and activity patterns of the scimitar-horned oryx (n = 1865 captures) and dorcas gazelle (n = 1208 captures). Using information theory and multi-model inference methods, along with the Pianka index, we evaluated the habitat characteristics influencing species distribution and their spatial niche overlap. To delineate daily activity patterns, we applied kernel density estimation. Our findings indicate minimal spatial overlap and distinct environmental factors determining suitable habitats for each species. Furthermore, we found significant temporal niche overlaps, indicative of synchrony in daily activity patterns, with both species showing peak activity at dawn and dusk. Our results indicated that oryx and gazelle differ in at least one dimension of their ecological niche at the current density levels, which contributes to their long-term and stable coexistence in STNP.

Warming and shifts in litter quality drive multiple responses in freshwater detritivore communities

Aquatic detritivores are highly sensitive to changes in temperature and leaf litter quality caused by increases in atmospheric CO2. While impacts on detritivores are evident at the organismal and population level, the mechanisms shaping ecological communities remain unclear. Here, we conducted field and laboratory experiments to examine the interactive effects of changes in leaf litter quality, due to increasing atmospheric CO2, and warming, on detritivore survival (at both organismal and community levels) and detritus consumption rates. Detritivore community consisted of the collector-gathering Polypedilum (Chironomidae), the scraper and facultative filtering-collector Atalophlebiinae (Leptophlebiidae), and Calamoceratidae (Trichoptera), a typical shredder. Our findings reveal intricate responses across taxonomic levels. At the organismal level, poor-quality leaf litter decreased survivorship of Polypedilum and Atalophlebiinae. We observed taxon-specific responses to warming, with varying effects on growth and consumption rates. Notably, species interactions (competition, facilitation) might have mediated detritivore responses to climate stressors, influencing community dynamics. While poor-quality leaf litter and warming independently affected detritivore larvae abundance of Atalophebiinae and Calamoceratidae, their combined effects altered detritus consumption and emergence of adults of Atalophlebiinae. Furthermore, warming influenced species abundances differently, likely exacerbating intraspecific competition in some taxa while accelerating development in others. Our study underscores the importance of considering complex ecological interactions in predicting the impact of climate change on freshwater ecosystem functioning. Understanding these emergent properties contributes to a better understanding of how detritivore communities may respond to future environmental conditions, providing valuable insights for ecosystem management and conservation efforts.

Bee and butterfly records indicate diversity losses in western and southern North America, but extensive knowledge gaps remain.

Pollinator losses threaten ecosystems and food security, diminishing gene flow and reproductive output for ecological communities and impacting ecosystem services broadly. For four focal families of bees and butterflies, we constructed over 1400 ensemble species distribution models over two time periods for North America. Models indicated disproportionally increased richness in eastern North America over time, with decreases in richness over time in the western US and southern Mexico. To further pinpoint geographic areas of vulnerability, we mapped records of potential pollinator species of conservation concern and found high concentrations of detections in the Great Lakes region, US East Coast, and southern Canada. Finally, we estimated asymptotic diversity indices for genera known to include species that visit flowers and may carry pollen for ecoregions across two time periods. Patterns of generic diversity through time mirrored those of species-level analyses, again indicating a decline in pollinators in the western U.S. Increases in generic diversity were observed in cooler and wetter ecoregions. Overall, changes in pollinator diversity appear to reflect changes in climate, though other factors such as land use change may also explain regional shifts. While statistical methods were employed to account for unequal sampling effort across regions and time, improved monitoring efforts with rigorous sampling designs would provide a deeper understanding of pollinator communities and their responses to ongoing environmental change.

Fitness effects of symbiotic relationships between arthropod predators: Synergy in a three‐way spider symbiosis

Abstract Symbiotic relationships shape ecological communities and often involve more than two species. Yet few experimental studies examine the impact of symbioses involving three species, particularly any mediating role of third parties, and none involving symbioses of predators. We investigated experimentally the synergistic and antagonistic fitness effects of three symbiotic spider predators across a broad latitudinal range and involving different species combinations. The three‐dimensional web complex of Cyrtophora spiders is a habitat patch to different associates—species of Argyrodes and web‐building Leucauge spider guests. Our field experiments, which manipulated the presence of each guest species and determined the subsequent host weight change, revealed a remarkable consistency in fitness outcomes across the three populations, with the consequences of the interactions between two species depending upon the services provided by a third. Cyrtophora hosts intercepted more prey when web‐building Leucauge guests were present and thus gained more weight. In contrast, Argyrodes guests exerted a fitness cost on their Cyrtophora host, but only when Leucauge guests were absent. A comparison of the prey consumed by Cyrtophora hosts and Argyrodes guests revealed that their diets (reflected in the size of prey) overlapped less in the presence of Leucauge web‐building guests. Our novel experimental study highlights the importance of exploring synergistic effects in multi‐species symbioses. Read the free Plain Language Summary for this article on the Journal blog.

Potential importance of vegetative spread and fragment regeneration for invasiveness of Clematis vitalba

AbstractIdentifying characteristics of invasive species or growth forms that facilitate their range expansion is critical for management. Clematis vitalba L. (old man's beard) is an invasive temperate liana in many areas of its introduction, yet its seedlings do not thrive in circumstances where resources are limited. Although some lianas in both tropical and temperate climates have been shown to spread by clonal stems along the ground, the bulk of previous research on C. vitalba reproduction has focused largely on aspects of seed ecology. The vegetative growth of the species is poorly understood. The first objective of our study was to evaluate the use of vegetative spread by C. vitalba as a means of local dispersal and population growth. We excavated ten 1‐m2 plots in infested riparian zones and found an extensive, branching network of creeping stems, both above and below ground. Our second objective was to test the ability of C. vitalba stem fragments to act as vegetative propagules. After 4 months, ~50% of two‐node fragments had regenerated, from both creeping and climbing stems. These studies help explain how a temperate liana forms populations and dominate ecological communities. The findings provide good evidence that C. vitalba may rely quite heavily on asexual reproduction. In addition, the results document liana stem phenotypic plasticity; fragmented climbing stems are just as likely as fragmented creeping stems to reprogram shoot tissue systems, generate roots and regrow as independent plants.

Native species diversity associated with Bosque Palmeras de Ocol in the Amazonas region, Peru

The objective was to evaluate the ecology and dynamics of the native species community in the Bosque Palmeras de Ocol in the district of Molinopampa, Amazonas, Peru. Six sampling points were established, in which 1,569 trees belonging to 47 species were found. Species such as Astrocaryum sp., with a relative density of 10.7 % and an importance value index (IVI) of 23.54 %, and Prunus sp., with a relative density of 8.9 % and an IVI of 22.23 %, stood out. Myrsine coriacea subsp. 2 was identified as key with a high relative frequency and an IVI of 16.21 %. Density per hectare revealed high values for Astrocaryum sp. (560 individuals/ha), Nectandra sp. (526 individuals/ha) and Prunus sp. 2 (470 individuals/ha). The distribution of tree height and diameter showed a predominance of smaller individuals, with most species presenting diameters less than 20 cm and heights between 3 and 4 m. The range/abundance curve highlighted Astrocaryum sp. as the most abundant species. The distribution models showed a good fit to the Null and Preemption distributions, with low values of Akaike's criterion (AIC) 111.56 and 114.60, respectively. These findings provide a detailed understanding of the species community in this forest, fundamental for its conservation and sustainable management.

Naïve and induced tolerance of 15 amphibian populations to three commonly applied insecticides

Human impacts on ecological communities are pervasive and species must either move or adapt to changing environmental conditions. For environments polluted by contaminants, researchers have found hundreds of target pest species evolving increased tolerance, but we have substantially fewer cases of evolved tolerance in non-target species. When species do evolve increased tolerance, inducible tolerance can provide immediate protection and favor the evolution of increased tolerance over generations via genetic assimilation. Using a model larval amphibian (wood frogs, Rana sylvatica), we examined the tolerance of 15 populations from western Pennsylvania and eastern New York (USA), when first exposed to no pesticide or sublethal concentrations and subsequently exposed to lethal concentrations of three common insecticides (carbaryl, chlorpyrifos, and diazinon). We found high variation in naïve tolerance among the populations for all three insecticides. We also discovered that nearly half of the populations exhibited inducible tolerance, though the degree of inducible tolerance (magnitude of tolerance plasticity; MoTP) varied. We observed a cross-tolerance pattern of the populations between chlorpyrifos and diazinon, but no pattern of similar MoTP among the pesticides. With populations combined from two regions, increased tolerance was not associated with proximity to agricultural fields, but there were correlations between proximity to agriculture and MoTP. Collectively, these results suggests that amphibian populations possess a wide range of naïve tolerance to common pesticides, with many also being able to rapidly induce increased tolerance. Future research should examine inducible tolerance in a wide variety of other taxa and contaminants to determine the ubiquity of these responses to anthropogenic factors.

Mechanics limits ecological diversity and promotes heterogeneity in confined bacterial communities

Multispecies bacterial populations often inhabit confined and densely packed environments where spatial competition determines the ecological diversity of the community. However, the role of mechanical interactions in shaping the ecology is still poorly understood. Here, we study a model system consisting of two populations of nonmotile Escherichia coli bacteria competing within open, monolayer microchannels. The competitive dynamics is observed to be biphasic: After seeding, either one strain rapidly fixates or both strains orient into spatially stratified, stable communities. We find that mechanical interactions with other cells and local spatial constraints influence the resulting community ecology in unexpected ways, severely limiting the overall diversity of the communities while simultaneously allowing for the establishment of stable, heterogeneous populations of bacteria displaying disparate growth rates. Surprisingly, the populations have a high probability of coexisting even when one strain has a significant growth advantage. A more coccus morphology is shown to provide a selective advantage, but agent-based simulations indicate this is due to hydrodynamic and adhesion effects within the microchannel and not from breaking of the nematic ordering. Our observations are qualitatively reproduced by a simple Pólya urn model, which suggests the generality of our findings for confined population dynamics and highlights the importance of early colonization conditions on the resulting diversity and ecology of bacterial communities. These results provide fundamental insights into the determinants of community diversity in dense confined ecosystems where spatial exclusion is central to competition as in organized biofilms or intestinal crypts.

Does fortune follow function? Exploring how consumer preferences drive the functional trait composition of the global songbird trade

Abstract Defaunation and extinction undermine the resilience and functioning of ecological communities and ecosystems. Relative to other disturbances, overexploitation for the global wildlife trade presents a unique case of trait‐based selection, as demand for specific individuals is often tied to unique morphological or aesthetic traits desired by consumers (‘market traits’). Because evolutionary history leads to species that share both market and functional traits, we posit that non‐random patterns of exploitation will result in non‐random loss of functional diversity. We applied a trait‐based framework to the global songbird trade for 4616 species, 148 of which are plausibly threatened by the trade. We quantified select market traits, such as unique coloration and song quality, and ecological traits related to body size, diet, and foraging strategy to assess whether the trade disproportionately threatens particular functional groups. We additionally looked for patterns of association between market traits and functional traits to assess whether selection on certain market traits could drive selection on associated functional traits. We found that overexploited birds are a distinct functional subset of the global songbird pool, with the trade disproportionately threatening large bodied, frugivorous, and seed eating birds. Across all songbirds, there were multiple non‐random associations between market traits and functional traits, with the strongest associations observed among trade‐threatened birds; this was consistent with our theory that consumer‐driven selection on market traits could theoretically result in selection on functional traits. However, there was mixed evidence for this hypothesis at a global scale, suggesting that disproportionate threat to functional diversity may be more likely in regions where there is heavy demand for associated market traits. Policy implications. Our results highlight the need for increased focus on the mechanistic drivers of trait‐based selection on the consumer side of wildlife trade, and how patterns of overexploitation can systematically affect ecological communities and ecosystem services. Read the free Plain Language Summary for this article on the Journal blog.

How do host population dynamics impact Lyme disease risk dynamics in theoretical models?

Lyme disease is the most common wildlife-to-human transmitted disease reported in North America. The study of this disease requires an understanding of the ecology of the complex communities of ticks and host species involved in harboring and transmitting this disease. Much of the ecology of this system is well understood, such as the life cycle of ticks, and how hosts are able to support tick populations and serve as disease reservoirs, but there is much to be explored about how the population dynamics of different host species and communities impact disease risk to humans. In this study, we construct a stage-structured, empirically-informed model with host dynamics to investigate how host population dynamics can affect disease risk to humans. The model describes a tick population and a simplified community of three host species, where primary nymph host populations are made to fluctuate on an annual basis, as commonly observed in host populations. We tested the model under different environmental conditions to examine the effect of environment on the interactions of host dynamics and disease risk. Results show that allowing for host dynamics in the model reduces mean nymphal infection prevalence and increases the maximum annual prevalence of nymphal infection and the density of infected nymphs. Effects of host dynamics on disease measures of nymphal infection prevalence were nonlinear and patterns in the effect of dynamics on amplitude in nymphal infection prevalence varied across environmental conditions. These results highlight the importance of further study of the effect of community dynamics on disease risk. This will involve the construction of further theoretical models and collection of robust field data to inform these models. With a more complete understanding of disease dynamics we can begin to better determine how to predict and manage disease risk using these models.

Estimating kill intervals for a specific prey species using location clusters from GPS-collared Eurasian lynx (Lynx lynx)

An increasing number of GPS telemetry studies have helped to gain important insights into predator-prey relationships in recent years. However, considerable time and effort is needed to evaluate whether GPS location clusters (GLCs) reflect predation events. To reduce field effort, predictive models are being developed to calculate predator kill intervals, but few studies have attempted to do this for a specific species of prey. Between 2013 and 2018, we studied predation by 13 GPS-collared Eurasian lynx (Lynx lynx) on Alpine chamois (Rupicapra rupicapra) in the northwestern Swiss Alps. Our objectives were to predict the total number of killed chamois, including potential kills in unchecked GLCs, and to evaluate if model predictions were sufficiently accurate. We built a set of generalized linear models (GLM) predicting the occurrence of GLCs containing lynx-killed chamois (1) versus GLCs containing other prey types or no prey (0) and compared their predictive performance by means of k-fold cross-validation. We found that model performance was very similar for all candidate models, with the full model yielding the best cross-validation result (accuracy = 0.83, sensitivity = 0.43, specificity = 0.94). Female lynx killed on average one chamois every 11.9 days (10.6–13.0 days, 95% CI); male lynx killed one chamois every 7.2 days (6.7–7.6 days, 95% CI). Our model showed high specificity for detecting non-chamois GLCs, but sensitivity for detection of GLCs with actual chamois kills was low. We conclude that the sensitivity of the models should be further improved, but the results can be sufficient for practical application. Predictive modelling approaches do not replace extensive fieldwork but require large sets of field data, high individual variability and thorough knowledge of a predator’s ecology and prey community. Our approach may provide useful results for binary classifications in rather simple predator-prey systems, but extrapolations from one study system to another might be difficult.

Diseñando la coexistencia urbana

This paper critically examines the prevailing paradigms of environmental and spatial justice, emphasising the existing disparities in policies that predominantly favour human interests while overlooking the fundamental rights and well-being of non-human species. Despite the growing acknowledgement of the importance of establishing a deeper connection between human and non-human actors for overall well-being, a pervasive speciesism mindset persists, distancing humans from the broader natural world. This separation from nature profoundly influences the formulation of policies and justice, establishing a bias that focuses primarily on human concerns and environmental conditions tailored to human well-being. Architects and planners, despite possessing the potential to enrich habitats for various species, frequently adopt human-centric approaches that marginalise other-than-human entities, restricting their access to the immediate surroundings of human territories and impeding opportunities for immersive nature experiences. This article advocates for a comprehensive paradigm shift in architectural practices, urging a more inclusive and equitable approach that extends spatial and environmental justice to encompass the diverse needs and rights of both human and non-human species within the urban landscape. The conclusions underscore the urgent need for architects and planners to re-evaluate their approaches, fostering an environment that supports coexistence and acknowledges the interconnectedness of all species. In the face of global biodiversity concerns and international frameworks such as the Kunming-Montreal Global Biodiversity Framework, the research contributes to the discourse on sustainable and ethical design practices, advocating for a future where spatial and environmental justice extends its reach beyond the confines of human experience to create a respectful and just coexistence with the entire ecological community.

The superiority of hydrophilic polyurethane in comammox-dominant ammonia oxidation during low-strength wastewater treatment

Carriers have been extensively employed to enhance nitrification performance during low-strength wastewater treatment by retaining slow-growing ammonia oxidizing microorganisms (AOMs). Still, there is a dearth of systematic understanding of biofilm properties and microbial community structure formed on different carriers. In this study, hydrophilic polyurethane foam (PUF) carriers were prepared and compared with five widely used commercial carriers, namely Kaldness 3, Biochip, activated carbon, volcanic rock, and zeolite. The results indicated that the biofilms formed on carriers enhanced microbial ammonia oxidation activity. Additionally, the biofilm developed on the PUF demonstrated the most superior performance among all selected carriers, not only exhibiting the highest abundant and the most active AOMs, with amoA gene abundance of 1.41 × 1013 copies/m3 and specific ammonia oxidation rate of 9.84 g NH4+-N/(m3 × h), but also possessing a compact structure, with 3.41 kg VSS/m3 and 46.83 mg extracellular polymeric substances/g VSS. The high-throughput sequencing analysis revealed that the comammox (CMX) Nitrospira dominated on biofilm due to the intrinsically low apparent half-saturation constant for substrate. A unique ecological community structure was established on PUF, characterized by low species diversity and high homogeneity in alignment with community characteristics of CMX. The biofilms on PUF contributed to the proliferation of CMX Nitrospira dominated by Nitrospira nitrosa, achieving the highest proportion among colonial three AOMs at 86.58 %. The appropriate average pore size, superior hydrophilicity, and large specific surface area of PUF carriers provided a robust foundation for the exceptional ammonia oxidation performance of the formed biofilms.

Environmental warming increases the importance of high-turnover energy channels in stream food webs.

Warming temperatures are altering communities and trophic networks across Earth's ecosystems. While the overall influence of warming on food webs is often context-dependent, increasing temperatures are predicted to change communities in two fundamental ways: (1) by reducing average body size and (2) by increasing individual metabolic rates. These warming-induced changes have the potential to influence the distribution of food web fluxes, food web stability, and the relative importance of deterministic and stochastic ecological processes shaping community assembly. Here, we quantified patterns and the relative distribution of organic matter fluxes through stream food webs spanning a broad natural temperature gradient (5-27°C). We then related these patterns to species and community trait distributions of mean body size and population biomass turnover (P:B) within and across streams. We predicted that (1) communities in warmer streams would exhibit smaller body size and higher P:B and (2) organic matter fluxes within warmer communities would increasingly skew toward smaller, higher P:B populations. Across the temperature gradient, warmer communities were characterized by smaller body size (~9% per °C) and higher P:B (~7% faster turnover per °C) populations on average. Additionally, organic matter fluxes within warmer streams were increasingly skewed toward higher P:B populations, demonstrating that warming can restructure organic matter fluxes in both an absolute and relative sense. With warming, the relative distribution of organic matter fluxes was decreasingly likely to arise through the random sorting of species, suggesting stronger selection for traits driving high turnover with increasing temperature. Our study suggests that a warming world will favor energy fluxes through "smaller and faster" populations, and that these changes may be more predictable than previously thought.

Meteorological, demographic, and environmental risk factors for Leishmania infantum in wildlife

Leishmania infantum is an important and neglected vector-borne zoonotic protozoa endemic in the Mediterranean basin. Several wild and domestic mammals can contribute to maintaining its circulation but their importance as effective reservoirs is still under discussion and varies depending on local ecological communities. By combining environmental, climatic, and individual information, this study assessed the presence of L. infantum DNA in a set of wild species from Northwestern Italy and the potential ecological factors related to the risk of infection. From 2020 to 2022, 304 free-ranging wild animals were analyzed for the detection of L. infantum DNA in the spleen and popliteal lymph node (when available).The prevalence obtained in wild boar (Sus scrofa) and roe deer (Capreolus capreolus) was higher than those previously reported (% ± confidence interval 95%; 42.9 ± 18.4% and 27 ± 6.6% in wild boar and roe deer, respectively), and this is the first report of this parasite infecting the coypu Myocastor coypus (60 ± 34.7%). L. infantum DNA was detected in all the seasons including those free of adult sandflies and seasonal differences were minimal, suggesting a long course of infection. The models revealed that animals from rainy areas with higher greenness during the summer, highly populated by humans and predominantly covered by water surfaces had a higher risk of L. infantum.This study contributes to confirming previous findings on the existence of a sylvatic cycle for L. infantum in certain regions of Italy, as well as on the potential epidemiological role of roe deer for this parasite given the elevated prevalence found.

Effects of sustainable agricultural practices on soil microbial diversity, composition, and functions

Soil microorganisms can provide multiple benefits to agroecosystems, which are assumed to be promoted by sustainable agricultural practices. However, the mechanisms that explain this relationship have not been clearly elucidated. Although studies have reported that sustainable agricultural practices promote microbial biomass, the broader implications for soil microbial composition and functions remain uncertain. Accordingly, we searched field experiments worldwide contrasting soil microbial communities under conventional and sustainable agricultural practices. We analysed 924 results of relative abundance of bacteria or fungi (using 16 S and ITS rRNA amplicon sequencing, respectively) at the Family taxonomic level obtained from 46 articles. We found higher soil bacterial richness and higher abundance of copiotrophic bacteria under sustainable agricultural practices. Organic fertilisation promoted the abundance of bacteria involved in C and N cycling, while conservation tillage decreased those involved in the decomposition of plant residue. While sustainable agricultural practices had a minor effect on the overall fungal structure, they led to increases in symbiotic fungi abundance (e.g., Geoglossaceae). Additionally, we observed a slight increase in arbuscular mycorrhizal fungi and a slight reduction in pathogenic fungi associated with plant disease (e.g., Botryosphaeriaceae). Higher soil microbial taxonomic diversity did not lead to increased soil multifunctionality; however, it could safeguard resilience for soil functions via the diversity insurance effect. This study establishes that sustainable agricultural practices can significantly influence microbial communities, leading to compositional and structural changes, as well as promoting relevant functions for agroecosystems. Altogether, these results highlight the importance of integrating concepts of community ecology into agricultural management practices for reaching sustainable agricultural systems.

Critical complex network structures in animal gastrointestinal tract microbiomes

BackgroundLiving things from microbes to their hosts (plants, animals and humans) interact with each other, and their relationships may be described with complex network models. The present study focuses on the critical network structures, specifically the core/periphery nodes and backbones (paths of high-salience skeletons) in animal gastrointestinal microbiomes (AGMs) networks. The core/periphery network (CPN) mirrors nearly ubiquitous nestedness in ecological communities, particularly dividing the network as densely interconnected core-species and periphery-species that only sparsely linked to the core. Complementarily, the high-salience skeleton network (HSN) mirrors the pervasive asymmetrical species interactions (strictly microbial species correlations), particularly forming heterogenous pathways in AGM networks with both “backbones” and “rural roads” (regular or weak links). While the cores and backbones can act as critical functional structures, the periphery nodes and weak links may stabilize network functionalities through redundancy.ResultsHere, we build and analyze 36 pairs of CPN/HSN for the AGMs based on 4903 gastrointestinal-microbiome samples containing 473,359 microbial species collected from 318 animal species covering all vertebrate and four major invertebrate classes. The network analyses were performed at host species, order, class, phylum, kingdom scales and diet types with selected and comparative taxon pairs. Besides diet types, the influence of host phylogeny, measured with phylogenetic (evolutionary) timeline or “age”, were integrated into the analyses. For example, it was found that the evolutionary trends of three primary microbial phyla (Bacteroidetes/Firmicutes/Proteobacteria) and their pairwise abundance-ratios in animals do not mirror the patterns in modern humans phylogenetically, although they are consistent in terms of diet types.ConclusionsOverall, the critical network structures of AGMs are qualitatively and structurally similar to those of the human gut microbiomes. Nevertheless, it appears that the critical composition (the three phyla of Bacteroidetes, Firmicutes, and Proteobacteria) in human gut microbiomes has broken the evolutionary trend from animals to humans, possibly attributable to the Anthropocene epoch and reflecting the far-reaching influences of agriculture and industrial revolution on the human gut microbiomes. The influences may have led to the deviations between modern humans and our hunter-gather ancestors and animals.

Shifting the paradigm: The role of introduced plants in the resiliency of terrestrial ecosystems to climate change.

Current ecological communities are in a constant state of flux from climate change and from species introductions. Recent discussion has focused on the positive roles introduced species can play in ecological communities and on the importance of conserving resilient ecosystems, but not how these two ideas intersect. There has been insufficient work to define the attributes needed to support ecosystem resilience to climate change in modern communities. Here, I argue that non-invasive, introduced plant species could play an important role in supporting the resilience of terrestrial ecosystems to climate change. Using examples from multiple taxonomic groups and ecosystems, I discuss how introduced plants can contribute to ecosystem resilience via their roles in plant and insect communities, as well as their associated ecosystem functions. I highlight the current and potential contributions of introduced plants and where there are critical knowledge gaps. Determining when and how introduced plants are contributing to the resilience of ecosystems to climate change will contribute to effective conservation strategies.