Soil Community Research Articles

Wood- and Manure-Derived Biochars Reduce Antibiotic Residues and Shift Antibiotic Resistance Genes and Microbial Communities in Manure Applied Forage–Soil Systems

The increasing use of antibiotics in livestock poses environmental risks, leading to contamination of agricultural soils and propagation of microbial antibiotic-resistant genes (ARGs). This study examined the impacts of wood- and manure-derived biochar (BC) on antibiotic residues, ARGs, and microbial communities in sandy loam and clay loam soils amended with manure in Cynodon dactylon pastures. We hypothesized that BC amendments would influence the degradation of antibiotics and the structure of microbial communities based on their physicochemical properties and soil types. Our results demonstrated that wood BC reduced the concentrations of tetracycline and sulfonamides, particularly in sandy loam soil, due to its larger surface area and hydrophobic properties. In contrast, manure BC provided additional nutrients and supported atmospheric nitrogen-fixing microbial groups, especially in clay loam soil, while exhibiting variable efficiency in reducing antibiotic residues due to its lower surface area and higher ash content. These findings underscore the differential impacts of each BC type, emphasizing the need for tailored BC applications based on soil type to effectively mitigate antibiotic contamination and promote sustainable agricultural practices. In conclusion, wood BC was more effective in enhancing soil health by reducing antibiotic residues and improving microbial diversity, particularly in sandy loam soils, while manure BC was beneficial for nutrient cycling in clay loam soils.

Earthworms and warming alter methane uptake and methane-cycling microbial community in meadow soil

Earthworms and warming alter methane uptake and methane-cycling microbial community in meadow soil

Characteristics of Bacterial Community Structure and Function in Artificial Soil Prepared Using Red Mud and Phosphogypsum.

The preparation of artificial soil is a potential cooperative resource utilization scheme for red mud and phosphogypsum on a large scale, with a low cost and simple operation. The characteristics of the bacterial community structure and function in three artificial soils were systematically studied for the first time. Relatively rich bacterial communities were formed in the artificial soils, with relatively high abundances of bacterial phyla (e.g., Cyanobacteria, Proteobacteria, Actinobacteriota, and Chloroflexi) and bacterial genera (e.g., Microcoleus_PCC-7113, Rheinheimera, and Egicoccus), which can play key roles in various nutrient transformations, resistance to saline-alkali stress and pollutant toxicity, the enhancement of various soil enzyme activities, and the ecosystem construction of artificial soil. There were diverse bacterial functions (e.g., photoautotrophy, chemoheterotrophy, aromatic compound degradation, fermentation, nitrate reduction, cellulolysis, nitrogen fixation, etc.), indicating the possibility of various bacteria-dominated biochemical reactions in the artificial soil, which can significantly enrich the nutrient cycling and energy flow and enhance the fertility of the artificial soil and the activity of the soil life. The bacterial communities in the different artificial soils were generally correlated with major physicochemical factors (e.g., pH, OM, TN, AN, and AP), as well as enzyme activity factors (e.g., S-UE, S-SC, S-AKP, S-CAT, and S-AP), which comprehensively illustrates the complexity of the interaction between bacterial communities and environmental factors in artificial soils, and which may affect the succession direction of bacterial communities, the quality of the artificial soil environment, and the speed and direction of the development and maturity of the artificial soil. This study provides an important scientific basis for the synergistic soilization of two typical industrial solid wastes, red mud and phosphogypsum, specifically for the microbial mechanism, for the further evolution and development of artificial soil prepared using red mud and phosphogypsum.

Plant G × Microbial E: Plant Genotype Interaction with Soil Bacterial Community Shapes Rhizosphere Composition During Invasion

It is increasingly recognized that different genetic variants of hosts can uniquely shape their microbiomes. Invasive species often evolve in their introduced ranges, but little is known about the potential for their microbial associations to change during invasion as a result. We asked whether host genotype (G), microbial environment (E), or their interaction (G × E) affected the composition and diversity of host-associated microbiomes in Centaurea solstitialis (yellow starthistle), a Eurasian plant that is known to have evolved novel genotypes and phenotypes and to have altered microbial interactions, in its severe invasion of CA, USA. We conducted an experiment in which native and invading plant genotypes were inoculated with native and invaded range soil microbial communities. We used amplicon sequencing to characterize rhizosphere bacteria in both the experiment and the field soils from which they were derived. We found that native and invading plant genotypes accumulated different microbial associations at the family level in each soil community, often counter to differences in family abundance between soil communities. Root associations with potentially beneficial Streptomycetaceae were particularly interesting, as these were more abundant in the invaded range field soil and accumulated on invading genotypes. We also found that bacterial diversity is higher in invaded soils, but that invading genotypes accumulated a lower diversity of bacteria and unique microbial composition in experimental inoculations, relative to native genotypes. Thus variation in microbial associations of invaders was driven by the interaction of plant G and microbial E, and rhizosphere microbial communities appear to change in composition in response to host evolution during invasion.

Assessment of microbial diversity in various saline soils driven by salt content

The Yellow River Delta, as an important reserve land resource area, faces soil salinization problems. Understanding the bacterial community composition in saline soils is an important foundation for control and utilization of saline soils. However, few studies have been conducted on the composition of bacterial communities in soils with different degrees of salinization. Thus, saline soils categorized into low-salinity (LS), medium-salinity (MS), and high-salinity (HS) based on electrical conductivity (EC) were collected. The 16S rRNA high-throughput sequencing analysis was performed to analyze the effects of salinities on soil bacterial community patterns, as well as the relationships between soil bacterial communities and environmental factors. The results showed that Actinobacteriota, Proteobacteria, Chloroflexi, Firmicutes, Acidobacteriota, Gemmatimonadota and Bacteroidota accounted for almost 90 % of all the bacterial community. The linear discriminant analysis effects (LDA > 3.7) showed that 6, 5 and 3 biomarkers were present in LS, MS and HS soils, respectively, which indicated EC was an important factor influencing the saline soil bacterial community patterns. Redundancy analysis further revealed that the primary environmental parameters impacting the bacterial community were pH, EC, nitrate nitrogen, available phosphorus, total phosphorus, and soil organic matter. According to network analysis, the microbial network complexity was increased steadily with increasing of soil salinity. These findings together revealed that bacterial communities could serve as a reliable way to assess and improve the quality of salinized soils.

Deciphering root-associated microbial communities in asymptomatic oil palm seedlings exposed to Ganoderma boninense: new insight into disease tolerance of oil palms.

Understanding the microbial communities in asymptomatic oil palm seedlings is crucial for developing disease-suppressive microbiota against basal stem rot (BSR) in oil palm. In this study, we compared the microbial communities in bulk soil, rhizosphere, and endosphere of control, asymptomatic, and symptomatic seedlings following inoculation with Ganoderma boninense. Our findings revealed significant shifts in microbial structure and interactions, particularly in asymptomatic seedlings. Both Actinobacteriota and Ascomycota were notably enriched in these samples, with Actinobacteriota identified as keystone taxa. Long-read shotgun metagenomics demonstrated that 67.4% of enriched Actinobacteriota taxa were unique to asymptomatic seedlings. Similarly, Ascomycota members showed significant enrichment, suggesting their potential role in BSR suppression. The consistent identification of these phyla across various analyses underscores their importance in disease resistance. This is the first report detailing the shifts in prokaryotic and fungal communities in asymptomatic and symptomatic seedlings, offering insights into potential disease-suppressive taxa across three compartments: bulk soil, rhizosphere, and endosphere of oil palm seedlings.

Response of nitrogen-cycling key functional genes and microbial communities in paddy soils to microplastics combined with antibiotics

Response of nitrogen-cycling key functional genes and microbial communities in paddy soils to microplastics combined with antibiotics

Understanding the transmission of bacterial agents of sapronotic diseases using an ecosystem-based approach: A first spatially realistic metacommunity model.

Pathogens such as bacteria, fungi and viruses are important components of soil and aquatic communities, where they can benefit from decaying and living organic matter, and may opportunistically infect human and animal hosts. One-third of human infectious diseases is constituted by sapronotic disease agents that are natural inhabitants of soil or aquatic ecosystems. They are capable of existing and reproducing in the environment outside of the host for extended periods of time. However, as ecological research on sapronosis is infrequent and epidemiological models are even rarer, very little information is currently available. Their importance is overlooked in medical and veterinary research, as well as the relationships between free environmental forms and those that are pathogenic. Here, using dynamical models in realistic aquatic metacommunity systems, we analyze sapronosis transmission, using the human pathogen Mycobacterium ulcerans that is responsible for Buruli ulcer. We show that the persistence of bacilli in aquatic ecosystems is driven by a seasonal upstream supply, and that the attachment and development of cells to aquatic living forms is essential for such pathogen persistence and population dynamics. Our work constitutes the first set of metacommunity models of sapronotic disease transmission, and is highly flexible for adaptation to other types of sapronosis. The importance of sapronotic agents on animal and human disease burden needs better understanding and new models of sapronosis disease ecology to guide the management and prevention of this important group of pathogens.

Specialized protist communities on mycorrhizal fungal hyphae.

Arbuscular mycorrhizal (AM) fungi not only play a crucial role in acquiring nutrients for plants but also serve as a habitat for soil microbes. Recent studies observed that AM fungal hyphae are colonized by specific bacterial communities. However, so far it has not been explored whether fungal hyphae and mycorrhizal networks also harbor specific communities of protists, a key group of microbes in the soil microbiome. Here, we characterized protist communities in soil in a compartment with plant roots and on hyphae collected from hyphal compartments without plant roots. We detected specific protist communities on fungal hyphae. Fourteen protistan amplicon sequences variants (ASVs) were significantly associated with fungal hyphae, half of which belonged to the Cercozoa group. This research, for the first-time detected specific protist ASVs directly associated with abundant AM fungus hyphae, highlighting the complexity of the hyphal food web.

Winter forage crops influence soil properties through establishing different arbuscular mycorrhizal fungi communities in paddy field

Winter planting is promising for improving the utilization rate of fallow paddy fields in southern China by establishing arbuscular mycorrhizal fungi (AMF) communities. However, the effects of different winter forage crops on AMF community construction remain unknown. The AMF community establishment of different winter planting forage crops were conducted in oat, rye, Chinese milk vetch, and ryegrass, with winter fallow as a control. The AMF colonization rate, soil AMF spore density, community structure and diversity, and soil physicochemical properties were determined. The results showed that the total nitrogen and available nitrogen in winter Chinese milk vetch were 11.11% and 16.92% higher than those in winter fallow (P < 0.05). After planting winter forage crops, the AMF spore density in winter oat, rye, Chinese milk vetch, and ryegrass soil were 127.90%, 64.37%, 59.91%, and 73.62% higher than that before planting, respectively (P < 0.05). Claroideoglomus was the dominant AMF genus in the soil of winter planting oat, rye, and ryegrass. The average membership function value of winter Chinese milk vetch was the highest, indicating that it had the best comprehensive effect on soil physicochemical properties, AMF community structure and diversity, and fresh forage yield. Winter forage crops could increase the spore pool of soil AMF and improve the soil AMF community structure and diversity. Winter Chinese milk vetch in paddy field had the best comprehensive effect on soil physicochemical properties and soil AMF community according to the comprehensive evaluation. These findings provide a theoretical basis for sustainable development and utilization of the southern rice paddy ecosystem.

Effects of different soil and water conservation measures on plant functional traits in the Loess Plateau.

Soil and water conservation measures (SWCM) have wide-ranging effects on vegetation and soil, and their effects on the ecosystem are multifaceted, with complex mechanisms. While numerous studies have focused on the impact of such measures on soil, the improvement of plant functional traits is a major factor in the ecological recovery of the Loess Plateau. This survey extensively investigated no measure plots, vegetation measure plots, and engineering measure plots in the Loess Plateau. The impact of SWCM on plant functional traits was investigated using structural equation modeling. We examined six plant functional traits-leaf dry weight (LD), specific leaf area (SLA), leaf tissue density (LTD), leaf total phosphorus (LTP), leaf total nitrogen (LTN), and leaf volume (LV)-correlated with resource acquisition and allocation. In 122 plots, we explored the effects of measures, soil, diversity, and community structure on the weighted average of plant functional traits. The findings showed substantial positive correlations between LD and SLA, LD and LV, SLA and LV, SLA and LTP, and LTP and LTN. LTD has a substantial negative correlation with LD, LTD with SLA, and LTD with LV. SWCM limits diversity, and the mechanisms by which it affects plant functional traits vary. In the structural equation model (SEM) of vegetation measures, improving community structure enhances plant functional traits, but soil factors have the greatest influence on plant functional traits in SEM engineering measures. Plant functional trait differences on the Loess Plateau result are due to differential plant responses to diverse soil properties and community structure. Vegetation measures enhance the chemical properties of plant functional traits, while engineering measures improve physical properties. The study provides a theoretical foundation for vegetation restoration and management following the implementation of diverse SWCM.

Biodegradation of PAEs in contaminated soil by immobilized bacterial agent and the response of indigenous bacterial community

Phthalic acid esters (PAEs) are common hazardous organic contaminants in agricultural soil. Microbial remediation is an effective and eco-friendly method for eliminating PAEs. Nevertheless, the operational mode and potential application of immobilized microorganisms in PAEs-contaminated soil are poorly understood. In this study, we prepared an immobilized bacterial agent (IBA) using a cedar biochar carrier to investigate the removal efficiency of PAEs by IBA in the soil. We found that IBA degraded 88.35% of six optimal-control PAEs, with 99.62% biodegradation of low-molecular-weight PAEs (DMP, DEP, and DBP). The findings demonstrated that the IBA achieved high efficiency and a broad-spectrum in degrading PAEs. High-throughput sequencing revealed that IBA application altered the composition of the soil bacterial community, leading to an increase in the relative abundance of PAEs-degrading bacteria (Rhodococcus). Furthermore, co-occurrence network analysis indicated that IBA promoted microbial interactions within the soil community. This study introduces an efficient method for the sustainable remediation of PAEs-contaminated soil.

Effects of Continuous Cropping on the Physiochemical Properties, Pesticide Residues, and Microbial Community in the Root Zone Soil of Lycium barbarum

Continuous cropping is a common obstacle limiting the high quality and yield of Lycium barbarum （wolfberry）. To clarify the response of soil characteristics of the wolfberry root zone to continuous cropping years, we systematically determined the physicochemical properties and pesticide residues of soils in the wolfberry root zone with different continuous cropping years. In addition, soil bacterial and fungal communities were characterized using high-throughput sequencing technology. The results were as follows： The content of total salt and imidacloprid in the root zone of wolfberry increased with increasing years of continuous cropping. Compared to that with 2 and 9 years, the total salt content in the root zone of wolfberry with 15 years of continuous cropping increased by 51.97% and 54.33%, respectively, and the imidacloprid content increased by 39.58% and 36.61%, respectively. Alkaline nitrogen and available potassium showed an increasing and then decreasing trend. Compared to that with 2 and 15 years, alkaline nitrogen and available potassium in the root-soil of wolfberry with 9 years of continuous cropping increased by 16.94%-28.09% and 18.31%-18.34%, respectively. The diversity and abundance of bacterial communities and the abundance of fungal communities were higher in the root-soil of wolfberry with 9 years of continuous cropping compared to that with 15 years of continuous cropping. In addition, the increase in continuous cropping years also increased the accumulation of harmful plant pathogens such as Pseudomonas, Arthrobacter, Actinomucor, and Trichoderma in the root zone of L. barbarum. Soil total salinity, organic matter, alkaline hydrolyzable nitrogen, and available potassium were the main factors influencing the distribution of bacterial communities. Soil alkaline hydrolyzable nitrogen, available potassium, and ammonium nitrogen were the main factors influencing the distribution of fungal communities. In addition, the soil bacteria in the root zone of L. barbarum were dominated by metabolic functions； in particular, amino acid metabolism, energy metabolism, and nucleotide metabolism were most abundant in the root soil of wolfberry with 9 years of continuous cropping, whereas the highest abundance of functional genes related to membrane translocation was found in the root-soil of wolfberry with 15 years of continuous cropping. The soil fungi were all dominated by saprophytic trophic types, followed by pathogenic cross-nutrients in the root zone of L. barbarum. In conclusion, long-term continuous cropping induced changes in the soil microenvironment in the root zone of L. barbarum, increased soil residues of harmful pesticides and the enrichment of plant pathogens, and reduced the diversity of soil bacterial and fungal communities. Therefore, it is necessary to control the rate of application of soil nutrients and pesticides in the management of L. barbarum and to carry out deep ploughing and deep tilling in good time, and the turnover of old plants in the cultivation of L. barbarum.

Microplastics and nanoplastics in soil: Sources, impacts, and solutions for soil health and environmental sustainability.

The present review discusses the growing concern of microplastics (MPs) and nanoplastics (NPs) in soil, together with their sources, concentration, distribution, and impact on soil microorganisms, human health, and ecosystems. MPs and NPs can enter the soil through various pathways, such as agricultural activities, sewage sludge application, and atmospheric deposition. Once in the soil, they can accumulate in the upper layers and affect soil structure, water retention, and nutrient availability. The presence of MPs and NPs in soil can also have ecological consequences, acting as carriers for pollutants and contaminants, such as heavy metals and persistent organic pollutants. Additionally, the leaching of chemicals and additives from MPs and NPs can pose public health risks through the food web and groundwater contamination. The detection and analyses of MPs and NPs in soil can be challenging, and methods involve spectroscopic and microscopy techniques, such as Fourier-transform infrared spectroscopy and scanning electron microscopy. To mitigate the presence and effects of MPs and NPs in soil, it is essential to reduce plastic waste production, improve waste management practices, and adopt sustainable agricultural practices. Effective mitigation measures include implementing stricter regulations on plastic use, promoting biodegradable alternatives, and enhancing recycling infrastructure. Additionally, soil amendments, such as biochar and compost, can help immobilize MPs and NPs, reducing their mobility and bioavailability. This review article aims to provide a comprehensive understanding of these emerging environmental issues and identify potential solutions to alleviate their impact on soil health, ecosystem functioning, and community health.

Fate of chlordecone in soil food webs in a banana agroecosystem in Martinique

Large quantities of chlordecone-based insecticides were produced and used throughout the world. One of its most important uses was to control the damage caused by Cosmopolites sordidus in banana-growing regions. In the islands of Martinique and Guadeloupe, 18,000 ha of farmland are potentially contaminated. Despite the key role played by soil macrofauna in agroecosystems, there are currently no data on their contamination. The aim of this study was to explore the fate of chlordecone (CLD) and its transfer to different organisms of the soil food web.Seven species of invertebrates representing different taxonomic groups and trophic levels of the soil communities of Martinique were targeted and collected in six experimental banana fields, with a level of contamination within a range of values classically observed. Soil samples and macrofauna from the study sites were analysed for CLD and chlordecol (CLDOH) its main transformation product. The contamination of the soil fauna were related to δ15N (trophic level), proportion of soil ingestion (diet) and types of epidermis (mucus or exoskeleton) in order to study the different mechanisms of macrofauna contamination.Presence of CLD and CLDOH could be quantified in all the soil organisms from contaminated fields. Results showed a significant relationship between the CLD contamination of detritivorous and the ash content of their faeces, suggesting that soil ingestion was the main contamination pathway. In contrast, the exoskeleton-bearing diplopod Trigoniulus coralinus and the soft-bodied earthworm Eudrilus eugeniae, both detritivores with a comparable diet, had similar contamination levels, suggesting that the type of tegument has little influence on bioaccumulation. At the scale of the entire trophic network, a significant relationship was uncovered between δ15N values and CLD contamination of the fauna, therefore providing some in situ evidence for a bioamplification process along the soil food chain.

Key microbial taxa play essential roles in maintaining soil muti-nutrient cycling following an extreme drought event in ecological buffer zones along the Yangtze River.

Climatic extremes, especially extreme droughts, are occurring more frequently and profoundly impacting biogeochemical processes. However, the relative importance of microbial communities on soil nutrient cycling and community maintenance under natural extreme drought events remains elusive. During a record-breaking drought in the Yangtze River Basin (YRB) in the summer of 2022, we collected ambient soils and drought-affected bare and vegetated soils in ecological buffer zones from two sites with similar soil and vegetation characteristics along the YRB, and examined the relative contribution of soil bacterial communities in supporting multi-nutrient cycling index (MNCI) involving carbon-, nitrate- and phosphorus-cycling and their associations with microbial network. Extreme drought decreased (p < 0.05) bacterial α-diversity but increased MNCI in vegetated soils at both sites, while both remained unchanged (p > 0.05) in bare soils, possibly as a result of vegetation releasing rhizodeposits under drought which selectively recruited bacterial communities. Bacterial community compositions were shifted (p < 0.05) only in vegetated soils, and they exerted more influence than α-diversity on soil MNCI. Notably, the Anaerolineae, identified as a biomarker enriched in vegetated soils, had close associations with enzyme activities and soil MNCI at both sites, suggesting their potential recruitment by vegetation to withstand drought. Furthermore, key ecological clusters (Module 1) in bacterial co-occurrence networks at both sites supported (p < 0.05) higher MNCI, despite no substantial variation in network structure due to drought. Specifically, the most important taxa within Module 1 for predicting soil MNCI revealed by random forest modeling analysis (R2=0.44 - 0.63, p < 0.001), such as B1-7BS, SBR1031 and Nocardioides, could be deeply involved in soil nitrogen-cycling, suggesting an essential role of specialized interactions of bacterial communities in maintaining soil multifunctionality. Overall, this study demonstrates that changes in biomarkers and functional taxa under extreme drought may better reflect the biological mechanisms involved in microbial communities impacting ecosystem function, which may aid in forecasting the ecological consequences of ongoing climate change in the ecological buffer zones along the YRB.

Terrestrial plastisphere as unique niches for fungal communities

Global prevalence of microplastics underscores the urgent need to investigate the ecology and biogeochemistry of the plastisphere. However, plastisphere mycobiome, particularly in terrestrial environments, remains largely unexplored. We conducted a comparative analysis of soil and plastisphere fungal communities using 125 experimental microcosms. Our results revealed distinct taxonomic structures between these two environments, with the genera Penicillium and pathogenic Alternaria being specifically enriched in the plastisphere. In comparison with soil communities, plastisphere communities exhibited weaker associations with environmental variables. Stochastic processes were found to be primary drivers of plastisphere fungal community assembly. Limited dispersal of fungal communities on soil microplastics was obtained, suggesting potential implications for taxa isolation or even diversity loss. The expanding plastisphere would pose critical planetary ecology challenges. Our findings highlight plastisphere act as unique niches for fungal communities that are less influenced by environmental variables, providing new insights into the ecology of the soil plastisphere.

Bacillus subtilis B55 degraded the ferulic acid and p-coumaric acid and changed the soil bacterial community in soils.

This study aimed to assess the effects of phenolic acid-degrading bacteria strains on phenolic acid content, plant growth, and soil bacterial community in phenolic acid-treated soils. The strain of interest coded as B55 was isolated from cucumber root litter, and its degradation rates of ferulic acid and p-coumaric acid were 81.92% and 72.41% in Luria-Bertani solution, respectively, and B55 was identified as Bacillus subtilis. B55 had plant growth-promoting attributes, including solubilization of inorganic phosphate and production of siderophore and indole acetic acid. Both ferulic acid and p-coumaric acid significantly restrained an increase in cucumber seedling dry biomass, while the B55 inoculation not only completely counteracted the damage of phenolic acids to cucumber seedlings and decreased the content of ferulic acid and p-coumaric acid in soil, but also promoted cucumber seedlings growth. Amplicon sequencing found that B55 inoculation changed the cucumber rhizosphere bacterial community structure and promoted the enrichment of certain bacteria, such as Pseudomonas, Arthrobacter, Bacillus, Flavobacterium, Streptomyces, and Comamonas. B55 not only promoted cucumber seedling growth, and decreased the content of ferulic acid and p-coumaric acid in soil, but it also increased the relative abundance of beneficial microorganisms in the cucumber rhizosphere.

Microbial controls on seed germination

Germination onset is the first stage in the phenological plant cycle, influenced by abiotic and biotic factors. Both soil and seed microbiota are key drivers of germination, influencing seed storage, dormancy release, and germination rates. Interactions between plants and soil microbes contribute to plant adaptation to their environment. Therefore, plants could benefit more from interacting with soil microbes from the local (‘home’) environment than with those from other origins. As crucial germination drivers, plants may select for specific microbial taxa that provide them with a home-field advantage, regardless of microbial richness and diversity in their surroundings. Here, we looked at the role of seed-associated microorganisms on holm oak (Quercus ilex) germination, whether seed or soil microbes have a greater impact on this process, and how the interaction between seed and soil microbiotas influence holm oak germination. We found that microbes on Q. ilex seeds have a significant effect on germination, with non-sterilised seeds having higher germinated acorns than sterilised ones. Moreover, when co-occurring, soil microorganisms enhance the effect of seed-associated microbes on holm oak germination. Overall, our results evidence a home-field advantage where local soil communities, along with seed-associated microorganisms, enhance Q. ilex germination over that of different soil or plant species, evidencing the importance of local adaptation for plant fitness.

Quantitative and Qualitative Relationships between Phospholipid Fatty Acid Analysis Biomarkers and Lignin in Soil from the Tibetan Plateau (China) under Laboratory Incubation Conditions

Lignin, an organic compound with a complex structure, is formed through the polymerization of structural units linked by carbon–carbon bonds and ether bonds. The question of whether lignin is labile or resistant to biological and chemical degradation in soil, particularly in alpine ecosystems, remains unresolved. To address this knowledge gap, we analyzed the relationship between phospholipid fatty acid biomarkers and the abundance of lignin components in grassland soils from North Tibet, China. Soil samples were collected from alpine grasslands, including alpine meadows and alpine steppes. The relative abundance of lignin in these alpine grassland soils before and after a 210-day incubation period was measured. Our results indicate that the relative abundance of lignin in the alpine grassland soils decreased during the incubation period. Significant relationships were found between the phospholipid fatty acid biomarkers of bacteria, fungi, Gram-positive bacteria, and Gram-negative bacteria and the relative abundance of lignin components. This research was conducted under laboratory conditions that are optimal for the development of microorganisms but significantly different from the conditions in Tibet. Furthermore, this study contributes to the understanding of soil organic matter degradation and the dynamics of microbial communities in alpine grassland soils in the context of future global warming.