Stenohaline freshwater stingrays (Potamotrygon spp.) are endemic to the very dilute (Na(+), Cl(-), Ca2(+) <or=30 micromol L(-1)), often acidic blackwaters of the Rio Negro despite gill Na(+) and Cl(-) transport characteristics that appear unfavorable (high K(m), low J(max)). We evaluated the possible protective role of blackwater itself, which is rich in dissolved organic carbon (DOC), as well as the importance of Ca(2+) in allowing this tolerance of dilute, acidic conditions. Responses of stingrays in natural blackwater (DOC=8.4 mg L(-1)) were compared with those in a natural reference water with similar ion levels but low DOC (0.6 mg L(-1)). Comparing these two water types, we found that differences in Na(+) and Cl(-) unidirectional fluxes (JXin, JXout; measured with radiotracers) and net fluxes (JXnet), influx and outflux kinetic relationships, and net ammonia excretion (J(Amm)) were generally small at pH 6.3, though the balance points where Jin=Jout shifted from >300 micromol L(-1) in reference water (low DOC) to about 100 micromol L(-1) in blackwater (high DOC). In reference water, both JNain and JClin were inhibited >90%, both JNaout and JClout more than doubled, and J(Amm) did not change at pH 4.0. In blackwater, the inhibition of influxes was attenuated, the increases in outflux did not occur, and J(Amm) increased by 60% at pH 4.0. Addition of 100 micromol L(-1) Ca(2+) to reference water prevented the increases in JNaout and JClout and allowed J(Amm) to increase at pH 4.0, which demonstrates that the gills are sensitive to Ca(2+). However, addition of Ca(2+) to blackwater had no effect on the responses to pH 4.0. Addition of commercial humic acid to reference water did not duplicate the effects of natural Rio Negro blackwater at the same DOC level; instead, it greatly exacerbated the increases in JNaout and JClout at low pH and prevented any protective influence of added Ca(2+). Thus, blackwater DOC appears to be very different from commercial humic acid. Biogeochemical modeling indicated that blackwater DOC prevents Ca(2+) binding, but not H(+) binding, to the gills and that the protective effects of blackwater cannot be attributed to its higher buffer capacity or its elevated Al or Fe levels. Natural DOC may act directly at the gills at low pH to exert a protective effect and, when doing so, may override any protective action of Ca(2+) that might otherwise occur.