Abstract Fluoride (F−) contamination in global water sources is a growing concern, prompting the need for innovative solutions. This explores a novel method using zinc oxide nanoparticle-activated carbon (ZnO-NP/AC) composite for efficient fluoride removal from deep soil water, aiming to evaluate its effectiveness in attracting fluoride contaminants. The focus is on treatment of water sample collected from Dharmapuri, Tamil Nadu, using green synthesis method for ZnO-NP/AC column filter. Employed an exclusive column adsorption method, investigated on physiochemical parameters in water before and after running the column. Fluoride concentration and TDS where significantly harnessed in water after running the green synthesis composite column filter. Characterization of green synthesized nanoparticles of Strychnos potatorum seed powder synthesis with ZnO NPs. Green synthesis successes were confirmed in two ways; one way is UV-visible spectrophotometer technique in depth quantity peak and another one is graphically peak from SEM, density and crystalline structure in XRD techniques. Column composite with S.potatorum ZnO-AC NPs has removed fluoride efficiently (80.5%) at range of 20 g/L for a contact time of 60 minutes, surpassing World health organization (WHO) guidelines for safe drinking water. In conclusion ZnO-AC NPs composite is a sustainable and cost-effective method for effective removal of fluoride contaminants from deep soil water, addressing a pressing global issue.