Columbia River Basin Research Articles

Reconstruction of the Hydro‐Thermal Behavior of Regulated River Networks of the Columbia River Basin Using Satellite Remote Sensing and Data‐Driven Techniques

AbstractThe use of satellite‐based thermal infrared remote sensing has facilitated the assessment of surface water temperature on a large scale. However, the inherent limitations of this remote sensing technique make it difficult to assess rivers unless ambient conditions are cloud‐free, devoid of steep terrain and the rivers are at least 60 m wide. To address these challenges that limit the spatiotemporal continuity of satellite‐based hydro‐thermal data, we harnessed the extensive coverage from the Landsat missions' thermal infrared sensors and data‐driven techniques to estimate surface water temperature of rivers. Out of the tested data‐driven techniques, we selected the Random Forest Regressor as our prime non‐linear approach for estimation of surface water temperature in rivers. Using the selected technique, proposed as THORR (Thermal History of Regulated Rivers), we successfully reconstructed a multi‐decadal, continuous spatiotemporal surface water temperature record for regulated rivers in the Columbia River Basin. Using 42 years of data, the surface water temperature could be predicted on average with 0.71° C of absolute error regardless of the dam's potential thermal influence in the downstream reaches. The reconstructed hydro‐thermal behavior generated from THORR revealed a long‐term downstream warming trend along the Columbia River. The open‐source THORR tool can be extended to any river system around the world that is not gauged with in‐situ temperature measurements for the reconstruction of hydro‐thermal behavior.

A Weight-of-Evidence Approach for Understanding the Recovery of Okanagan Sockeye Salmon

The productivity of Pacific Sockeye salmon (Oncorhynchus nerka) in the Columbia River has been declining over the past century. Yet, the Okanagan River Sockeye salmon population, which spawns in the Okanagan River, a Canadian tributary of the Columbia River, has seen a remarkable turnaround in abundance. Different hypotheses and lines of evidence covering multiple spatial scales have been proposed to explain this recovery; but they have never been comprehensively assessed. We adopted a weight-of-evidence approach to systematically assess the relative likelihood that each of these causal hypotheses contributed to the observed recovery. Our analysis disentangles the relative consequences of a set of environmental management actions that have been implemented to augment the Sockeye salmon freshwater productivity, while accounting for changes in freshwater and marine environmental conditions. Our list of potentially explanatory causal factors (anthropogenic and natural) included: (1) changes in escapement concurrent with improving local fish passage, (2) the implementation of fish-friendly flows in the Okanagan River, (3) initiating a hatchery restocking program, (4) potential improvements to Columbia dam operations to support higher relative survival of out-migrating juvenile fish, (5) possible shifts in survival-favorable conditions in the coastal marine environment for ocean-going life stages, and (6) broader changes to multi-stock harvest regimes in the Columbia River. Our assessment leveraged comparisons with the population dynamics of another Sockeye salmon stock in the Columbia River basin to differentiate between the impacts of management actions taken within the Okanagan watershed (our focus) from those occurring over the broader basin and marine scale. The results suggest that while shifts towards survival-favorable conditions in the coastal marine environment in 2007 played an important role in the upturn of the Okanagan population, alone it cannot explain the rate at which the Okanagan River Sockeye salmon recovered. Strong evidence supports the combined effect of increased escapement in conjunction with establishing and securing fish-friendly flows during spawning, incubation, and alevin emergence. Additionally, Sockeye salmon restocking improved the resilience of the stock against density-independent mortality events. These combined basin-level management actions played a pivotal role in magnifying the recovery trajectory afforded by improved marine survivorship. The spectacular response of the Okanagan River Sockeye salmon to the holistic perspectives and management interventions of Indigenous and other caretakers provides hope that other Pacific salmon stocks can be stabilized and recovered.

Prediction of Distributed River Sediment Respiration Rates Using Community‐Generated Data and Machine Learning

AbstractRiver sediment microbial respiration is a key indicator of ecosystem functioning and the biogeochemical fluxes across this critical zone link surface and subsurface waters. As such, there is tremendous interest in measuring and mapping these respiration rates. Respiration observations are expensive and labor intensive; there is limited data available to the community. An open science, collaborative initiative is collecting samples for respiration rate analysis and multi‐scale metadata; this evolving data set is being used for making machine learning (ML) predictions at unsampled sites to help inform continued community engagement. However, it is a challenge to find an optimum configuration for ML models to work with this feature‐rich (i.e., 100+ possible input variables) data set. Here, we present results from a two‐tiered approach to managing the analysis of this complex data set: (a) a stacked ensemble of models that automatically optimizes hyperparameters and manages the training of many models and (b) feature permutation importance to detect the most important features in the models. The major elements of this workflow are modular, portable, open, and cloud‐based thus making this implementation a potential template for other applications. The models developed here predict that sediment organic matter chemistry is one of the most important features for predicting sediment respiration rate. Other larger‐scale, important features fall into the categories of climatic, ecological, geological, and fluvial settings. Leveraging these larger‐scale features to generate data‐driven estimates of river sediment respiration rates reveals spatially consistent but heterogeneous patterns across the river network of the Columbia River Basin.

Back from the brink: Estimating daily and annual abundance of natural-origin salmon smolts from 30-years of mixed-origin capture-recapture data

Evaluating the status and trends of natural-origin anadromous fish populations over time requires robust estimates of out-migrating juvenile abundance. Information on abundance is typically acquired by capturing actively migrating fish as they pass stationary monitoring platforms. Challenges to estimation include protracted migration timing, temporally varying capture probabilities and the contemporaneous presence of unmarked hatchery-origin fish. The confounding effects of unmarked hatchery fish are especially pernicious in systems hosting multiple hatchery programs with variable mark-rates among releases. Here, we address this problem for a regionally and culturally important population of Chinook salmon (Oncorhynchus tshawytscha) supported by a hatchery-supplementation program implemented in response to the listing of this population under the U.S. Endangered Species Act. We developed a model to estimate daily and annual abundance of naturally produced age-0 fall Chinook salmon passing Lower Granite Dam (Snake River, USA) for each of the last 30 years. We accounted for variable hatchery marking rates by integrating two related data sources: 1) release-recapture data of fish with individually identifiable tags and 2) counts of marked and unmarked sample of fish captured each day. We fit joint parameters for daily fish arrival and capture probabilities to these data to estimate the daily abundance of hatchery- and natural-origin fish. Our results show that from 1992 to 2021, the annual abundance of juvenile natural-origin Snake River fall Chinook salmon increased by two orders of magnitude. These results are the first comprehensive evaluation of multi-decadal trends in abundance and run-timing for this population. Our approach can be adapted to other runs and locations within the Columbia River basin or similar systems where out-migrating fish are monitored at fixed locations.

Assessing Zebra Mussels’ Impact on Fishway Efficiency: McNary Lock and Dam Case Study

The Columbia River Basin faces a threat from the potential invasion of zebra mussels (Dreissena polymorpha), notorious for their ability to attach to various substrates, including concrete, which is common in fishway construction. Extensive mussel colonization within fishways may affect fish passage by altering flow patterns or creating physical barriers, leading to increased travel times, or potentially preventing passage altogether. Many factors affect mussel habitat suitability including vectors of dispersal, water parameters, and various hydrodynamic quantities, such as water depth, velocity, and turbulence. The objective of this study is to assess the potential for zebra mussels to attach to fishway surfaces and form colonies in the McNary Lock and Dam Oregon-shore fishway and evaluate the potential impact of this infestation on the fishway’s efficiency. A computational fluid dynamics (CFD) model of the McNary Oregon-shore fishway was developed using the open-source code OpenFOAM, with the two-phase solver interFoam. Mesh quality is critical to obtain a reliable solution, so the numerical mesh was refined near the free surface and all solid surfaces to properly capture the complex flow patterns and free surface location. The simulation results for the 6-year average flow rate showed good agreement with the measured water column depth over each weir. Regions susceptible to mussel infestation were identified, and an analysis was performed to determine the mussel’s preference to colonize as a function of the depth-averaged velocity, water depth, and wall shear stress. Habitat suitability criteria were applied to the output of the hydraulic variables from the CFD solution and provided insight into the potential impact on the fishway efficiency. Details on the mesh construction, model setup, and numerical results are presented and discussed.

Response of Precipitation Increases to Changes in Atmospheric Moisture and Its Flux in the Columbia River Basin: WRF Model–Based Precipitation Maximization for PMP Studies

Response of Precipitation Increases to Changes in Atmospheric Moisture and Its Flux in the Columbia River Basin: WRF Model–Based Precipitation Maximization for PMP Studies

The influence of multidecadal climate variability and abrupt landscape change on terrestrial ecosystem composition and fire regime in the upper Columbia River basin - A high-resolution Holocene perspective

High-resolution paleoclimatic and paleoecologic datasets from a small lake in eastern Washington (USA) help elucidate Holocene environmental dynamics in the interior Pacific Northwest. Round Lake lies near the ecotone between sagebrush steppe and dry pine forest, making it highly sensitive to changes in precipitation-evaporation (P-E) balance. We present isotopic, sedimentological, and paleoecological data from a single sedimentary sequence analyzed at sufficient resolution to detect sub-decadal climatic variability. During the early Holocene (11,000–8500 cal yr BP), when summer insolation was higher than present, Round Lake experienced persistent aridity that led to reduced forest cover and small, probably frequent surface fires. Sub-centennial hydroclimate fluctuations during this period were muted, as indicated by low multi-decadal variability in δ18Ocarbonate records from the region. Oxygen isotopes indicate increased cool-season moisture during the middle Holocene (8500-5300 BP), but stratigraphic evidence suggests intermediate and variable lake levels. The deposition of the Mazama tephra (ca. 7600 cal yr BP) immediately preceded to a protracted expansion of steppe at the expense of forest. Increased hydroclimate variability and fire activity following ash deposition likely restricted conifer taxa even when elevated cool-season moisture would have facilitated their growth. The late Holocene was marked by persistently high lake levels, as indicated by the lithostratigraphic and pollen records. Comparatively large multidecadal variations in precipitation, which peaked during the last millennium, were also prominent features of late-Holocene hydroclimate, and may have been related to the strengthening of the El Niño Southern Oscillation and Pacific Decadal Oscillation. Pinus and Pseudotsuga show a 60–100 year lag in their response to hydroclimatic variations inferred from the oxygen isotope records. These results highlight how millennial-to-decadal scale hydroclimate conditions, along with abrupt landscape change, influence ecology in a water-stressed region of western North America.

Synthetic modeling to manage the nexus of food, energy, and water systems under uncertainty: The case of the Columbia River Basin

Managing the nexus of food, energy, and water (FEW) systems is complex due to uncertainties, especially concerning climate change’s effects on resource demand. To assess these uncertainties’ impacts, we crafted optimization models treating the FEW nexus as a spatially distributed multi-agent system (MAS). Applied to a synthetic Columbia River Basin (CRB), our methodology offers guidance for CRB management. Results inform optimal energy investments, food production, and water allocation, highlighting a reversed water accessibility priority among irrigation and industrial agents. Hydropower’s relevance to policy is minimal but susceptible to climate change, affecting river inflow. Our alternate model evaluates emissions policy, suggesting current caps yield the highest marginal profit. Benchmark tests against a deterministic model reveal significantly increased regional profit potential with our proposed model.

Exploring the food-energy-water nexus in coupled natural-human systems under climate change with a fully integrated agent-based modeling framework

Managing water resources to meet increasing energy and food demands while maintaining environmental sustainability under climate change is a major challenge, especially when this nexus occurred in a coupled natural–human system (CNHS), where heterogeneous human activities affect the natural hydrologic cycle and vice versa. The relevant research has been limited by the lack of models that can effectively integrate human dynamics and hydrologic conditions with spatial details to examine co-evolutionary systems. To address this challenge, this paper develops a modeling framework that integrates an agent-based model (ABM; human behavior model) into a large-scale, process-based distributed hydrologic model to simulate human decisions endogenously in the hydrologic cycle. We then apply the Decision Scaling approach, an ex-post scenario analysis method, with our integrated model to study the bidirectional feedback of the CNHS under future changing climate conditions. With the Columbia River Basin (CRB) selected as the case study area, the calibration results show that the integrated model can simultaneously capture the historical irrigated water consumption and streamflow dynamics. Modeling results show that the trade-off between irrigated water consumption, hydropower generation, and streamflow will become more pronounced under hotter and wetter climate conditions at both the entire basin and regional (states and provinces) levels. Special attention should be given to “temperature thresholds” of different regions when the trade-off pattern started. The trade-off results can potentially inform the Columbia River Treaty renegotiation and provide insights for long-term water management policies.

Efficient species identification for Pacific salmon genetic monitoring programs.

Genetic monitoring of Pacific salmon in the Columbia River basin provides crucial information to fisheries managers that is otherwise challenging to obtain using traditional methods. Monitoring programs such as genetic stock identification (GSI) and parentage-based tagging (PBT) involve genotyping tens of thousands of individuals annually. Although rare, these large sample collections inevitably include misidentified species, which exhibit low genotyping success on species-specific Genotyping-in-Thousands by sequencing (GT-seq) panels. For laboratories involved in large-scale genotyping efforts, diagnosing non-target species and reassigning them to the appropriate monitoring program can be costly and time-consuming. To address this problem, we identified 19 primer pairs that exhibit consistent cross-species amplification among salmonids and contain 51 species informative variants. These genetic markers reliably discriminate among 11 salmonid species and two subspecies of Cutthroat Trout and have been included in species-specific GT-seq panels for Chinook Salmon, Coho Salmon, Sockeye Salmon, and Rainbow Trout commonly used for Pacific salmon genetic monitoring. The majority of species-informative amplicons (16) were newly identified from the four existing GT-seq panels, thus demonstrating a low-cost approach to species identification when using targeted sequencing methods. A species-calling script was developed that is tailored for routine GT-seq genotyping pipelines and automates the identification of non-target species. Following extensive testing with empirical and simulated data, we demonstrated that the genetic markers and accompanying script accurately identified species and are robust to missing genotypic data and low-frequency, shared polymorphisms among species. Finally, we used these tools to identify Coho Salmon incidentally caught in the Columbia River Chinook Salmon sport fishery and used PBT to determine their hatchery of origin. These molecular and computing resources provide a valuable tool for Pacific salmon conservation in the Columbia River basin and demonstrate a cost-effective approach to species identification for genetic monitoring programs.

How Sociopolitical Histories and Lifeways Impact the Formation of ‘Good Governance’ in the Restoration of Anadromous Fish in the Columbia River Basin

Despite decades of restoration efforts in the U.S. Columbia River Basin (CRB), recovery of anadromous fish remains elusive. Regional stakeholder conflicts about objectives for fish restoration complicate efforts to collaboratively develop successful governance systems. While ecological research and solutions have been primary considerations for restoration initiatives, much of the literature recognizes social complexities as the root of the problem. This research employs a qualitative approach that illuminates how sociopolitical histories and lifeways underpin stakeholders’ divergent objectives that challenge the formation of good governance in the CRB. We show how sociopolitical histories and lifeways reproduce a lack of representation of tribal members in leadership which inhibits the formation of good governance. This has significant implications for the process and outcomes of participatory governance and how governance processes can meaningfully integrate diverse voices in an intentional way to facilitate a just and equitable outcome for humans and ecosystems.

Irrigation intensification impacts sustainability of streamflow in the Western United States

Quantifying the interconnected impacts of climate change and irrigation on surface water flows is critical for the proactive management of our water resources and the ecosystem services they provide. Changes in streamflow across the Western U.S. have generally been attributed to an aridifying climate, but in many basins flows can also be highly impacted by irrigation. We developed a 35-year dataset consisting of streamflow, climate, irrigated area, and crop water use to quantify the effects of both climate change and irrigation water use on streamflow across 221 basins in the Colorado, Columbia, and Missouri River systems. We demonstrate that flows have been altered beyond observed climate-related changes and that many of these changes are attributable to irrigation. Further, our results indicate that increases in irrigation water use have occurred over much of the study area, a finding that contradicts government-reported irrigation statistics. Increases in crop consumption have enhanced fall and winter flows in some portions of the Upper Missouri and northern Columbia River basins, and have exacerbated climate change-induced flow declines in parts of the Colorado basin. We classify each basin’s water resources sustainability in terms of flow and irrigation trends and link irrigation-induced flow changes to irrigation infrastructure modernization and differences in basin physiographic setting. These results provide a basis for determining where modern irrigation systems benefit basin water supply, and where less efficient systems contribute to return flows and relieve ecological stress.

Utility of parentage-based tagging for monitoring Coho salmon (Oncorhynchus kisutch) in the interior Columbia River basin.

By the 1980s, after decades of declining numbers in the mid-1900s, Coho salmon (Oncorhynchus kisutch) were considered extirpated from the interior Columbia River. In the mid-1990s, the Confederated Tribes of the Umatilla Indian Reservation, the Confederated Tribes and Bands of the Yakama Nation, and the Nez Perce Tribe began successful reintroduction programs of Coho salmon upstream of Bonneville Dam, but which were initially sourced from lower Columbia River hatcheries. Here we present the first Coho salmon parentage-based tagging (PBT) baseline from seven hatchery programs located in the interior Columbia River basin, and two sites at or downstream of Bonneville Dam, composed of over 32,000 broodstock samples. Analyses of baseline collections revealed that genetic structure followed a temporal pattern based on 3-year broodlines rather than geographic location or stocking history. Across hatchery programs, similar levels of genetic diversity was present. The PBT baseline provided multiple direct applications such as identification of origin for Coho salmon collected in a mixed stock at Priest Rapids Dam and the detection of the proportion and distribution of hatchery-origin fish on the spawning grounds in the Methow River basin. The PBT baseline for Coho salmon is freely available for use and can be downloaded from FishGen.net.

Life-cycle modeling reveals high recovery potential of at-risk wild Chinook salmon via improved migrant survival

Chinook salmon ( Oncorhynchus tshawytscha) in the Columbia River basin are threatened by anthropogenic changes to migratory corridors, estuaries, and natal habitats. Streams provide spatially heterogeneous natal habitats essential for salmon spawning and rearing life stages. We fit a statistical state-space model to salmon populations in Idaho's Middle Fork Salmon River (MFSR) to assess spatial variation in natal productivity and population growth. Our model integrated multiple long-term data sets to estimate variation in per-capita smolt production and smolt-to-adult (SAR) survival. Smolt production varied across stream segments, averaging 104.48 female smolts per spawning female, while SARs averaged 0.74%. Chinook salmon population growth rates exceeded replacement in 17% of segments (4 of 23). By increasing SARs to 1.8% (near the lower bound of Columbia River basin recovery targets), we predict that all 23 MFSR segments will yield positive population growth rates at contemporary (very low) spawner densities. Our analysis suggests that for Snake River basin populations within high-quality natal habitats, SAR improvements will elevate salmon population growth rates and enhance restoration of at-risk wild Chinook salmon.

Caspian Tern Management to Increase Survival of Juvenile Salmonids in the Columbia River Basin: Progress and Adaptive Management Considerations

Predation by Caspian terns Hydroprogne caspia is a factor limiting the recovery of some Endangered Species Act‐listed populations of salmonids from the Columbia River basin, especially steelhead Oncorhynchus mykiss. This prompted the development and implementation of two separate management plans, one in the Columbia River estuary and the other in the Columbia Plateau region, to reduce the impact of Caspian tern predation on smolt survival. Caspian terns nesting at managed breeding colonies within the basin were relocated to alternative nesting islands created for terns outside the basin. Both plans were successful in significantly reducing smolt losses to Caspian terns nesting at managed sites; however, new developments have led to regression in smolt survival gains associated with tern management. Adaptive management to prevent terns at managed colonies from relocating to nest elsewhere in the basin and to improve nesting opportunities for Caspian terns outside the basin are needed to maximize the survival benefits to Endangered Species Act‐listed salmonids from management. Adaptive management is also necessary to ensure the long‐term viability of the Pacific Flyway population of Caspian terns, whose breeding population has declined by more than 50% since the two management plans were implemented.

A Link Between Hydroclimate Variability and Biomass Burning During the Last Millennium in the Interior Pacific Northwest

AbstractWe present oxygen isotope and charcoal accumulation records from two lakes in eastern Washington that have sufficient temporal resolution to quantitatively compare with tree‐ring records and meteorological data. Hydroclimate reconstructions from tree‐rings and lake sediments show close correspondence after accounting for seasonal‐ to centennial‐ scale temporal sensitivities. Carbonate δ18O measurements from Castor and Round lakes reveal that the Medieval Climate Anomaly (MCA) experienced wetter November‐March conditions than the Little Ice Age (LIA). Charcoal records from Castor, Round, and nearby lakes show elevated fire activity during the LIA compared to the MCA. Increased multidecadal hydroclimate variability after 1250 CE is evident in proxy records throughout western North America. In the Upper Columbia River Basin, multidecadal wet periods during the LIA may have enhanced fuel loads that burned in subsequent dry periods. A notable decline in biomass burning occurred with Euro‐American settlement in the late nineteenth century.

The return of the adult Pacific Lamprey offspring from translocations to the Columbia River

AbstractObjectiveThe Pacific Lamprey Entosphenus tridentatus is valuable to tribal culture and to the ecosystem, but its abundance in the interior Columbia River has been highly variable and muted in recent years. Translocation programs have been adopted as a proactive strategy to restore Pacific Lamprey abundance to the interior Columbia River, including the Snake River basin, and these efforts have been largely successful in increasing larval and juvenile abundance in the recipient watersheds and further downstream. We address whether adult translocation offspring from three Columbia River Treaty Tribe programs return to Bonneville Dam in numbers that support previous model predictions; and whether Columbia River origin Pacific Lamprey contribute to adult production widely across the species range.MethodsWe used a genetic data set of unknown origin Pacific Lamprey that returned as adults to Bonneville Dam and broadly distributed locations within and outside of the Columbia River basin. We identified the natal origin of these adults via sibship or parentage to assign individuals to either a precise natal site of volitional production or a set of candidate parents from one of the translocation programs in the Columbia River.ResultWe showed that not only have Snake River translocation offspring returned as adults to Bonneville Dam in numbers that exceeded model projections, but offspring from two other tribal translocation programs in the Umatilla (northeast Oregon) and Yakima (south‐central Washington) rivers were also detected in recent years. Offspring produced across all three translocation programs are estimated at approximately 1065 fish in 2021. Although Pacific Lamprey are known to lack precise natal homing, which may limit the benefits of translocations in the interior Columbia River basin, evidence from detections in this study supports a preference by interior Columbia River Pacific Lamprey to return home and migrate toward their natal basins. However, a portion of Snake River‐origin Pacific Lamprey was estimated to deviate from main‐stem routes into tributaries, including tribal ceded areas where tribal harvest occurs (e.g., Sherars Falls on the Deschutes River).ConclusionThese results indicate benefits from Pacific Lamprey translocation programs that will not only increase abundance to targeted areas but will also increase opportunities for tribal harvest of this culturally important species.

Changing the Narrative: Settler Colonialism, Food and the Columbia River Treaty

While the written terms of the Columbia River Treaty appear to justify the often-heard claim that it is all about hydropower and flood control, a full account of its history reveals its critical importance to US agriculture and close relationship to early phases of colonization and development in the Upper Columbia River Basin. In this paper I argue that the Treaty is best understood as the third phase in the last large-scale government-sponsored settler colonialism project in North America, a project that began with the construction of the Grand Coulee Dam in the 1930s. I further argue that the dominant narrative that informs current efforts by Canada and the US to revise the treaty does not fully recognize the settler colonial structure of the original treaty or its critical impact on both Indigenous and settler food systems throughout the basin. I begin with a description of the history of the treaty, in order to demonstrate its continuity with earlier phases of settler colonialism, then focus on its impact on food systems. I conclude with an assessment of the ongoing Canada/US treaty review and renegotiation process that began in 2011 with suggestions for how the process could be brought into better alignment with the United Nations Declaration on the Rights of Indigenous Peoples and the Calls to Action of the Truth and Reconciliation Commission of Canada.

Using Geospatial Data and Random Forest To Predict PFAS Contamination in Fish Tissue in the Columbia River Basin, United States.

Decision makers in the Columbia River Basin (CRB) are currently challenged with identifying and characterizing the extent of per- and polyfluoroalkyl substances (PFAS) contamination and human exposure to PFAS. This work aims to develop and pilot a methodology to help decision makers target and prioritize sampling investigations and identify contaminated natural resources. Here we use random forest models to predict ∑PFAS in fish tissue; understanding PFAS levels in fish is particularly important in the CRB because fish can be a major component of tribal and indigenous people diet. Geospatial data, including land cover and distances to known or potential PFAS sources and industries, were leveraged as predictors for modeling. Models were developed and evaluated for Washington state and Oregon using limited available empirical data. Mapped predictions show several areas where detectable concentrations of PFAS in fish tissue are predicted to occur, but prior sampling has not yet confirmed. Variable importance is analyzed to identify potentially important sources of PFAS in fish in this region. The cost-effective methodologies demonstrated here can help address sparsity of existing PFAS occurrence data in environmental media in this and other regions while also giving insights into potentially important drivers and sources of PFAS in fish.

Stray compositions of hatchery‐origin Chinook Salmon and steelhead in natural spawning populations of the upper Columbia watershed

AbstractObjectiveOne of the biggest concerns of operating hatchery salmonid programs is high straying of returning adults into nontarget populations and the possible homogenization of genetic diversity among populations caused by spawning of stray fish. The composition of hatchery‐origin stray Chinook Salmon Oncorhynchus tshawytscha and steelhead O. mykiss relative to the natural spawning populations, termed “recipient population stray composition,” was evaluated at three spatial scales in the upper Columbia River basin, where stray target limits were 5–10%.MethodsChinook Salmon carcasses were collected from 1999 to 2018 in spawning areas shortly after spawning, and carcasses were examined to determine origin. Steelhead strays and spawning escapement were evaluated using passive integrated transponder tags between 2013 and 2018. We calculated mean stray compositions for 1999–2018 and for 2014–2018.ResultThe mean recipient population stray compositions ranged between 0.02% and 87.35% and increased with decreasing spatial scale. Recipient stray compositions of all taxa at the basin scale were <3%, and summer and fall Chinook Salmon were <0.5%. Stray compositions in subbasins for all taxa ranged between 0.07% and 33.04%. Spring and summer Chinook Salmon exceeded 5% and 10% (summer Chinook Salmon) in some periods in the Entiat and Methow River subbasins, but stray compositions for all Chinook Salmon were <5% in the Wenatchee, Okanogan, and Hanford Reach subbasins for all periods. All steelhead stray compositions in subbasins exceeded 5%, except for those in the Wenatchee subbasin. Stray compositions of spring Chinook Salmon in tributaries ranged between 0.61% and 87.35%. Only the Chiwawa, Icicle, and Twisp rivers were consistently below 10%.ConclusionIn cases where recipient stray management targets were exceeded, some were the result of single hatchery contributions but others were the result of cumulative contributions from multiple hatcheries. Some solutions to reduce recipient stray compositions will likely involve a combination of changes to hatchery, harvest, and habitat management.