Color Variants Research Articles

The relationship between eggshell color, hatching traits, fertility, mortality, and some qualitative aspects of Japanese quail (Coturnix japonica) eggs

Quail, one of the most important sources of meat and eggs, can aid in the reduction of the meat crisis if they are raised and cared for by small farmers. The current study investigated the impact of eggshell color variety on egg quality traits and hatching parameters of Japanese quail Coturnix japonica eggs. Therefore, 1,075 eggs were collected from female quails when they were 10-wk old. These eggs were distributed based on the color of their eggshells into 5 different classifications: eggshell with color type 1, very dark distributed brown spots on brown eggshell; eggshell with color type 2, small black spots on a white eggshell; eggshell with color type 3, widespread brown spots on brown eggshell; eggshell with color type 4, bubble egg, pin dotted on grayish brown color eggshell; and eggshell with color type 5, small brown spots on very clearly white eggshell. The characteristics of hatchability, internal and external egg quality, and the rate of embryonic death were then determined. The results showed that the percentage of fertility and commercial and scientific hatchability was greatly affected by eggshell color. There were also variations in the percentage of hatched chicks', early mortality rates, and late mortality rates based on eggshell color. According to the results of the current study, eggshell color has a significant impact on egg weight, egg width, and percentages of eggshell, yolk, and albumen but has no effect on shape index, egg length, or egg elongation. Based on the results, eggshells with color types 2 and 3 were recommended for use in hatching procedures due to their high levels of fertility (92.01 and 91.63%, respectively), scientific hatchability (82.92 and 83.93%, respectively), commercial hatchability (76.56 and 77.32%, respectively), and hatched chick (5.50 and 6.70, respectively). In addition, the late embryonic mortality rate was 0.00% for eggshells with color type 3. Therefore, the color of the eggshell can be employed as a key factor in guiding the eggs that are produced, whether they are going to be consumed at the table or used for hatching, to make breeding easier.

DlMYB113 mutation affects anthocyanin accumulation in red pericarp longan (Dimocarpus longan Lour.)

Fruit color influences fruit quality and commodity value. Most longan (Dimocarpus longan Lour.) varieties have a yellowish-brown or grayish-yellow pericarp, and the discovery of red pericarp (RP) longan expanded the color varieties of longan fruit. Our previous research showed that the red pericarp of RP fruit was mainly caused by anthocyanin accumulation; however, its underlying regulatory mechanism remains unknown. Herein, DlMYB113, an R2R3-MYB transcription factor, was discovered by examining differentially expressed genes in two longan cultivars. Dimocarpus longan MYB (v-myb avian myeloblastosis viral) 113 (DlMYB113) expression was significantly higher in the pericarp and leaves of RP longan than in ‘Shixia’ longan. Sequence alignment analysis revealed two amino acid substitutions in the R3 domain between DlMYB113rp in RP longan and DlMYB113sx in ‘Shixia’ longan. Transient expression of DlMYB113rp significantly increased anthocyanin accumulation in tobacco leaves, whereas DlMYB113sx had negligible effect. Meanwhile, DlMYB113 overexpression promotes anthocyanin accumulation in Arabidopsis and longan calli. Site-directed mutation detection revealed divergence in DlMYB113 function when the R3 repeat 197-position base T was replaced with G, and the 317- and 318-position AT bases were replaced with GA. Our findings indicate that DlMYB113 can regulate anthocyanin production in RP longan, and three mutations in its nucleic acid sequence lead to anthocyanin accumulation, thereby developing molecular markers associated with the anthocyanin accumulation trait in RP longan. This study will facilitate early screening of longan hybrids with desirable fruit color and be significant for breeding new characteristic varieties.

Characterization of Potential Melanoma Predisposition Genes in High-Risk Brazilian Patients

Increased genetic risk for melanoma can occur in the context of germline pathogenic variants in high-penetrance genes, such as CDKN2A and CDK4, risk variants in low- to moderate-penetrance genes (MC1R and MITF), and possibly due to variants in emerging genes, such as ACD, TERF2IP, and TERT. We aimed to identify germline variants in high- and low- to moderate-penetrance melanoma risk genes in Brazilian patients with clinical criteria for familial melanoma syndrome. We selected patients with three or more melanomas or melanoma patients from families with three tumors (melanoma and pancreatic cancer) in first- or second-degree relatives. Genetic testing was performed with a nine-gene panel (ACD, BAP1, CDK4, CDKN2A, POT1, TERT, TERF2IP, MC1R, and MITF). In 36 patients, we identified 2 (5.6%) with germline pathogenic variants in CDKN2A and BAP1 and 4 (11.1%) with variants of uncertain significance in the high-penetrance genes. MC1R variants were found in 86.5%, and both red hair color variants and unknown risk variants were enriched in patients compared to a control group. The low frequency of germline pathogenic variants in the high-penetrance genes and the high prevalence of MC1R variants found in our cohort show the importance of the MC1R genotype in determining the risk of melanoma in the Brazilian melanoma-prone families.

Assessing the Anti-Aging and Wound Healing Capabilities of Etlingera elatior Inflorescence Extract: A Comparison of Three Inflorescence Color Varieties.

Torch ginger, Etlingera elatior, is a Zingiberaceae plant with various red, pink, and white inflorescence. The wound healing potential and anti-aging effects of freeze-dried torch ginger inflorescence extracts (FTIEs) from three varieties were compared. The red FTIE had the highest content of phenolic, flavonoid, caffeoylquinic acid, and chlorogenic acid, followed by the white and pink FTIE. Consistent with the chemical constituents, the red FTIE demonstrated the greatest capacities for free radical scavenging, anti-tyrosinase, and anti-collagenase activity, followed by the white and pink FTIE. In cell-based studies, FTIEs displayed cytotoxicity to B16F10 melanoma cells, with the red FTIE showing the greatest activity (LC50 of 115.5 μg/mL). In contrast, the pink and the white FTIEs had less cytotoxicity impact. Nonetheless, at 1000 μg/mL, all three FTIE variants were safe on L929 fibroblasts or RAW 264.7 monocyte cells. White FTIE (500 μg/mL) exhibited the highest activity in stimulating collagen production and the greatest impact on cell migration, whereas the pink and red FTIE had a lesser effect. All FTIEs slightly suppressed the pro-inflammatory cytokines produced by lipopolysaccharide-stimulated monocytes, with no significant variation between FTIE variants. In conclusion, all FTIEs revealed promising potential for anti-aging cosmeceuticals and wound care products at specific concentrations.

Complete chloroplast genome assembly and phylogenetic analysis of blackcurrant (Ribes nigrum), red and white currant (Ribes rubrum), and gooseberry (Ribes uva-crispa) provide new insights into the phylogeny of Grossulariaceae.

Blackcurrant (Ribes nigrum), red currant (R. rubrum), white currant (R. rubrum), and gooseberry (R. uva-crispa) belong to Grossulariaceae and are popular small-berry crops worldwide. The lack of genomic data has severely limited their systematic classification and molecular breeding. The complete chloroplast (cp) genomes of these four taxa were assembled for the first time using MGI-DNBSEQ reads, and their genome structures, repeat elements and protein-coding genes were annotated. By genomic comparison of the present four and previous released five Ribes cp genomes, the genomic variations were identified. By phylogenetic analysis based on maximum-likelihood and Bayesian methods, the phylogeny of Grossulariaceae and the infrageneric relationships of the Ribes were revealed. The four cp genomes have lengths ranging from 157,450 to 157,802 bp and 131 shared genes. A total of 3,322 SNPs and 485 Indels were identified from the nine released Ribes cp genomes. Red currant and white currant have 100% identical cp genomes partially supporting the hypothesis that white currant (R. rubrum) is a fruit color variant of red currant (R. rubrum). The most polymorphic genic and intergenic region is ycf1 and trnT-psbD, respectively. The phylogenetic analysis demonstrated the monophyly of Grossulariaceae in Saxifragales and the paraphyletic relationship between Saxifragaceae and Grossulariaceae. Notably, the Grossularia subgenus is well nested within the Ribes subgenus and shows a paraphyletic relationship with the co-ancestor of Calobotrya and Coreosma sections, which challenges the dichotomous subclassification of the Ribes genus based on morphology (subgenus Ribes and subgenus Grossularia). These data, results, and insights lay a foundation for the phylogenetic research and breeding of Ribes species.

Effects of Seven Sterilization Methods on the Functional Characteristics and Color of Yan 73 (Vitis vinifera) Grape Juice.

Yan 73 (Vitis vinifera) is a dyed grape variety cultivated in China. Currently, most studies have focused on the mechanism of anthocyanins or the impact of anthocyanins as auxiliary color varieties on wine color. There is little research on its direct use or direct processing of products such as juice. In order to investigate the effects of different processing methods on the juice of Yan 73 grapes, the physicochemical and functional properties, as well as the sensory indexes of the juice, were analyzed by using thermal pasteurization (TP), thermosonication (TS), TS combined with nisin (TSN), TS combined with ε-Polylysine (TSε), irradiation (IR), and high hydrostatic pressure (HHP). The physicochemical indexes, functional properties, and sensory indexes of Smoke 73 grape juice were determined and analyzed. The results of the study showed that among the seven sterilization methods, total polyphenol content (TPC) in juice was significantly increased in all treatments except HHP. TPC was the highest in TP (3773.33 mg GAE/L). Total anthocyanin content (TAC) was increased except IR5, and TSN (1202.67 mg/L) had the highest TAC. In terms of color, TP (a* = 36.57, b* = 19.70, L* = 14.81, C* = 41.55, h° = 28.30, ΔE = 5.9) promotes the dissolution of anthocyanins because of high temperatures, which basically improves all the color indicators of grape juice and makes the color of grape juice more vivid. After HHP treatment, the color (ΔE = 1.72) and aroma indicators are closer to the grape juice itself. The Entropy weight-TOPSIS, CRITIC-Topsis, and PCA integrated quality evaluation models showed that all selected TP as the best integrated quality.

Analysis of BhAPRR2 allele variation, chlorophyll content, and chloroplast structure of different peel colour varieties of wax gourd (Benincasa hispida) and development of molecular markers

Analysis of BhAPRR2 allele variation, chlorophyll content, and chloroplast structure of different peel colour varieties of wax gourd (Benincasa hispida) and development of molecular markers

Length-weight relationship for the dragonfish, Stichopus cf. monotuberculatus (Holothuroidea)

Length-weight relationships are commonly used to convert length measurements to body weights for data from population surveys, to generate estimates of biomass for stock assessment. These morphometric relationships assess whether increases in body weight are proportional to unit increases in length, providing an insight into growth. Few biological data are available for the nocturnally active sea cucumber, Stichopus cf. monotuberculatus, which is harvested throughout the Indo-Pacific region. This study assessed the morphometric relationships between body length and weight, and basal area and weight for three broad colour variants of S. cf. monotuberculatus at two reefs on the Southern Great Barrier Reef. Preparation of ossicles from the external tissues of the animals validated the species identification. All morphometric relationships were significant and revealed negative allometric growth (exponent, b, range = 2.17–2.42), as found in other holothuroids. Despite some deviance in length-weight relationships between colour types, the largely overlapping data points suggest that a single equation should be appropriate for weight estimation of S. cf. monotuberculatus. Length measurements alone were sufficient for estimating weight (r2 = 0.80) because the addition of width measurements made no tangible improvement to the model fit. The findings indicate that this sea cucumber maintains a relatively consistent shape, with limited contraction of the body. These results will be useful for estimations of weight in future fishery surveys to estimate stock biomass and catch volumes.

Prevalence and potential evolutionary significance of color variants in freshwater crayfishes (Decapoda: Astacidea)

Abstract Mutations may lead to the evolution and diversification of color phenotypes in animals. Much of the research on this topic, however, has been conducted on vertebrates. I compile here records of color variants in freshwater crayfishes (Decapoda: Astacidea). I found color variants to be surprisingly common, with 115 documented occurrences. The overwhelming majority of these variants were blue-colored (71.3%), although there are records of document red and orange variants, among others. Whether these variants are all due to mutations or can lead to adaptive evolution in crayfishes is unknown. Some crayfish species exhibit conspicuous colors like blue, orange, and red in nature. Many of these conspicuously colored species are also semi-terrestrial burrowers, which have limited migration potential, smaller population sizes, and thus reduced gene flow compared to aquatic burrowing crayfishes. I speculate that in at least some species, conspicuous colors may be a neutral color trait that faces little to no selective pressure. This is one potential explanation as to why semi-terrestrial burrowing species are more likely to be conspicuously colored. Genetic studies and behavioral experiments are required to test this hypothesis.

A genome-wide association study of coat color in Chinese Rex rabbits.

Coat color is an important phenotypic characteristic of the domestic rabbit (Oryctolagus cuniculus) and has specific economic importance in the Rex rabbit industry. Coat color varies considerably among different populations of rabbits, and several causal genes for this variation have been thoroughly studied. Nevertheless, the candidate genes affecting coat color variation in Chinese Rex rabbits remained to be investigated. In this study, we collected blood samples from 250 Chinese Rex rabbits with six different coat colors. We performed genome sequencing using a restriction site-associated DNA sequencing approach. A total of 91,546 single nucleotide polymorphisms (SNPs), evenly distributed among 21 autosomes, were identified. Genome-wide association studies (GWAS) were performed using a mixed linear model, in which the individual polygenic effect was fitted as a random effect. We detected a total of 24 significant SNPs that were located within a genomic region on chromosome 4 (OCU4). After re-fitting the most significant SNP (OCU4:13,434,448, p = 1.31e-12) as a covariate, another near-significant SNP (OCU4:11,344,946, p = 7.03e-07) was still present. Hence, we conclude that the 2.1-Mb genomic region located between these two significant SNPs is significantly associated with coat color in Chinese Rex rabbits. The well-studied coat-color-associated agouti signaling protein (ASIP) gene is located within this region. Furthermore, low genetic differentiation was also observed among the six coat color varieties. In conclusion, our results confirmed that ASIP is a putative causal gene affecting coat color variation in Chinese Rex rabbits.

Anthrenus (s. str.) semipallens sp. nov., a new species from Spain (Coleoptera: Dermestidae: Anthreninae).

During an examination of Spanish Anthrenus spp. held in Andreas Herrmann's private collection, four specimens of a new species were noted: Anthrenus (Anthrenus) semipallens. Images of habitus features, including antenna, are presented and compared with other Anthrenus species thought to occur in Spain. A. semipallens is small so some comparison species could be eliminated courtesy of size. Although A. semipallens doesn't resemble the colour pattern of any other species, the possibility that A. semipallens is an unknown colour variant of a comparison species was considered. The A. semipallens specimens were dissected and the aedeagus compared with aedeagi from all other possible species. There was no similarity. Anthrenus semipallens is a valid new species.

The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview

Barramundi (Lates calcarifer), a popular aquaculture species, has silver to bronze skin coloration with rare golden, “panda” (golden and black spots), and black variants. Increased production of these rare color variants is commercially desirable; however, the differences in skin-cell morphologies have not been characterized. Microscopy, transmission electron microscopy, and immunohistochemistry were utilized to characterize morphological, ultrastructural, and cellular differences between barramundi color variants. Notably, melanophores, iridophores, and xanthophores were evident. Differences in the occurrence of melanin were visible, with a reduction in melanophores in the golden (average of 0.47 melanophores/cm2) versus the silver (average of 218.6 melanophores/cm2) or black (average of 462.9 melanophores/cm2) color phenotypes. Furthermore, a significant decrease in melanophores was observed in panda variant at the edge between golden and black patches: golden vs. edge (p < 0.001), golden vs. black (p < 0.001) and edge vs. black (p < 0.001). The TEM analysis revealed a distinct difference in melanophores and mature melanosomes, with stages 1, 2, 3, and 4 melanosomes present in silver variants and rare stage 1 (immature) melanosomes in golden variant. Furthermore, the immunohistochemical techniques provided independent and thorough documentation of the presence and maturity of melanophores and melanosomes across highly valued barramundi color variants. In conclusion, the color of barramundi appears to be driven by the presence/absence and number of melanophores in the skin layer.

Formula Optimization From Halal Lip Cream Variety With Tomato Extract (Lycopersicum esculentum L.)

The majority of the population of Indonesia embraces Islam, which is obliged to consume halal products. One of the most popular products is the lip cream variant. One of the forms and physical stability of halal lip cream variants is influenced by the selection and content of the base Wax. The halal aspect of the lip cream variant is viewed from the components and processing process. Tomatoes are used as natural dyes with a concentration of 5% to support the halal element. This research aims to get the optimal Wax base in the halal lip cream formula so that the variant can meet the necessities. This research was conducted experimentally by using a base comparison. The base Wax used in this research were Carnauba Wax (15%), Microcrystalline Wax (15%), and a combination of the two (6%:9%). The results showed an orange color variant, semi-solid form, rose smell, homogeneous composition, pH, spreadability, good smearing power, and not irritating. The adhesion test showed that F1 adhered well while F2 and F3 did not. In the stability test, F1 and F3 were stable, while F2 was unstable with the formation of 2 phases. Based on the evaluation of the halal lip cream variant showed the most optimal result, namely the F1 combination of Carnauba Wax and Microcrystalline Wax

Colourfulness of European beech wood with a round false heartwood in the color space CIE L*a*b*

The paper analyzes the color of dry wood of false heartwood in the color space CIE L*a*b*. The color of dry European beech wood with false heartwood perceived by the human eye is in a wide range of shades from light to brown-yellow to red-brown. The color of the wood of the false heartwood in the color space CIE L*a*b* was measured with a Color reader CR-10 colorimeter (Konica Minolta, Japan). A D65 light source was used and the diameter of the optical sensing aperture was 8 mm. The results of the statistical processing of the measured values of the color of dry beech wood, false heartwood on the planed surface is identified through the values on the lightness coordinate L* = 65.9 4.8 and on the chromatic coordinates: red color a* = 12.7 2.1 and yellow b* = 20.3 1.9. The colourfulness of the darkness and yellow-brown-red shades of wood of the false heartwood is numerically quantified by the total color difference ΔEsx* = 5.5.The presented values of the color of false heartwood beech wood and the definition of color boundaries in the color space CIE L*a*b* create space for designers to model the color variety of compositions and construction and joinery products made of beech wood.

Differences in Some Physical and Chemical Properties of Beechwood with False Heartwood, Mature Wood and Sapwood

The article presents the differences in some physical and chemical properties of wood with false heartwood, mature wood, and sapwood of Fagus sylvatica L.: density of wood in the dry state, color in the color space CIE L*a*b* on the tangential surface and the planed surface at w = 10 ± 0.5%, as well as moisture and acidity of wet wood. As part of chemical analyses, the relative proportion of cellulose, hemicelluloses, lignin, and extractive substances in individual zones of beechwood in trunks with false heartwood was determined. From the carried out analyses, it follows that the biggest difference between the wood of false heartwood, mature wood, and sapwood is the color of the wood. The red-brown color of the wood with false heartwood in the color space CIE L*a*b* is described by the following coordinate values: L* = 64.9 ± 4.9; a* = 12.9 ± 1.4; b* = 19.6 ± 1.7. The most significant differences between the values of the color space are on the lightness coordinate, where the light ochre-white of mature wood shows a decrease of ∆L* = −14.0 compared with the color of false heartwood, and the white—pale grey color of sapwood shows a decrease of ∆L* = −17.5. The density of dry beechwood with false heartwood is higher by ∆ρ0 = 4.7% than the density of mature wood, and the density of sapwood is ∆ρ0 = 12.3% lower than the density of wood with false heartwood. The exact opposite applies to the acidity of wet beechwood. The results of wet wood acidity measurements also point to certain differences. While the acidity of the wet wood of false heartwood is pH = 5.32 ± 0.13, the acidity of the sapwood is 5.1% lower. The higher acidity of beech heartwood is attributed to the presence of organic acids in polyphenols during heartwood formation. From the comparison of the representation of cellulose, hemicellulose, lignin, and extractive substances, it follows that the relative content of lignin and hemicelluloses is higher in false heartwood than in mature wood and sapwood. On the contrary, the content of holocellulose and cellulose is highest in sapwood. The presented divisions in the physical and chemical properties of beechwood with false heartwood do not limit the use of beechwood in industrial applications, except for a change in color; the definition of color boundaries in the color space CIE L*a*b* creates space for sorting beechwood according to color and can be used to increase the color variety of compositions of construction-carpentry products.

Spatial patterns of flower colour variation in native and introduced ranges of Convolvulus arvensis (Convolvulaceae) revealed by citizen-science data and machine learning.

Flower colour polymorphism refers to the presence of multiple colour variants in plant populations. Investigation of this phenomenon led to multiple discoveries, including the principles of heredity and the foundations of population genetics. I examined flower colour variation across native and introduced ranges of Convolvulus arvensis, which exhibits flower colour polymorphism (individuals have white or pink petals). To study flower colour variation of this species throughout large geographic scale, I used observations gathered from the iNaturalist platform. To handle a large amount of data, I trained a neural network to classify the plants' morphs based on photographs. After which I performed spatial analyses to examine the patterns of the colour frequency, also in relation to environmental factors. The results show that flower colours are polymorphic across the whole species range, but the frequency of pink versus white flowers varies. In the Palearctic, I observed geographic clines of colour morph frequencies: a higher frequency of the pink morph in populations from Northwest Europe, whereas in South and East Europe, towards the eastern edge of the range, the white morph was dominant. In contrast, pattern of colour distribution in North America (where the species is invasive) seems random, but the model indicates a link between higher proportions of pink morphs in mild and humid climates. The mechanisms behind the observed patterns remain largely unknown, as changes in a morphs' frequency are not strongly linked to abiotic factors. To understand the spatial pattern, a detailed investigation, accounting for the species' phylogeography is needed. This study provides another example of how the general public may collect data relevant to ecological studies, even when the data are not collected for a specific project.

Accumulation of Microplastics in the Digestive Tract and Gonads and its Effects on Gonad Quality of Sea urchins Tripnesutes gratilla

Marine plastic debris that is transported will move with the flow of water and float and then be degraded into smaller particles, namely microplastics, sink and settle on the substrate. Sea urchins as deposit feeders have the potential to ingest microplastic particles, where these particles can influence changes in behavior, growth, enzyme production, reproduction, and tissue structure. This study used a purposive sampling method with descriptive analysis for data related to the recording of morphometrics and gonadal quality as well as follow-up tests of the Tukey test and Pearson test. This study aims to analyze how the accumulation of microplastics in organs (digestive tract and gonads) affects the gonadal quality of sea urchins Tripneustes gratilla. The results showed that the number of microplastic particles found in the digestive tract of sea urchins was 233 particles/individual and in the gonads were 205 particles/individual with the color variants transparent, multicolor, blue, yellow, red, green, and purple. Gonadal quality assessment indicators are color, firmness, and gonadal index. Gonads with good quality were shown by sea urchins from Laha beach (site 1) with a composition of 40% bright orange, 40% yellow/pale yellow, 20% bright orange, very firm 80% and not firm20%, and a gonadal index value of 7.57 %. In contrast, gonads with poor quality were shown by sea urchins from Erie beach (site 4) with a composition of 80% brown and 20% gray, a very firm of 60% and 40% firm, and a gonadal index value of 3.08%. This difference in quality is thought to be the result of microplastic accumulation in the sea urchin organs which causes the satiated delusion.

Green Sweet Pepper Fruit and Peduncle Detection Using Mask R-CNN in Greenhouses

In this paper, a mask region-based convolutional neural network (Mask R-CNN) is used to improve the performance of machine vision in the challenging task of detecting peduncles and fruits of green sweet peppers (Capsicum annuum L.) in greenhouses. One of the most complicated stages of the sweet pepper harvesting process is to achieve a precise cut of the peduncle or stem because this type of specialty crop cannot be grabbed and pulled by the fruit since the integrity and value of the product are compromised. Therefore, accurate peduncle detection becomes vital for the autonomous harvesting of sweet peppers. ResNet-101 combined with the feature pyramid network (FPN) architecture (ResNet-101 + FPN) is adopted as the backbone network for feature extraction and object representation enhancement at multiple scales. Mask images of fruits and peduncles are generated, focused on green sweet pepper, which is the most complex color variety due to its resemblance to the background. In addition to bounding boxes, Mask R-CNN provides binary masks as a result of instance segmentation, which would help improve the localization process in 3D space, the next phase of the autonomous harvesting process of sweet peppers, since it isolates the pixels belonging to the object and demarcates its boundaries. The prediction results of 1148 fruits on 100 test images showed a precision rate of 84.53%. The prediction results of 265 peduncles showed a precision rate of 71.78%. The mean average precision rate with an intersection over union at 50 percent (mAP@IoU=50) for model-wide instance segmentation was 72.64%. The average detection time for sweet pepper fruit and peduncle using high-resolution images was 1.18 s. The experimental results show that the proposed implementation manages to segment the peduncle and fruit of the green sweet pepper in real-time in an unmodified production environment under occlusion, overlap, and light variation conditions with effectiveness not previously reported for simultaneous 2D detection models of peduncles and fruits of green sweet pepper.

Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus.

Scleropages formosus (Osteoglossiformes, Teleostei) represents one of the most valued ornamental fishes, yet it is critically endangered due to overexploitation and habitat destruction. This species encompasses three major color groups that naturally occur in allopatric populations, but the evolutionary and taxonomic relationships of S. formosus color varieties remain uncertain. Here, we utilized a range of molecular cytogenetic techniques to characterize the karyotypes of five S. formosus color phenotypes, which correspond to naturally occurring variants: the red ones (Super Red); the golden ones (Golden Crossback and Highback Golden); the green ones (Asian Green and Yellow Tail Silver). Additionally, we describe the satellitome of S. formosus (Highback Golden) by applying a high-throughput sequencing technology. All color phenotypes possessed the same karyotype structure 2n = 50 (8m/sm + 42st/a) and distribution of SatDNAs, but different chromosomal locations of rDNAs, which were involved in a chromosome size polymorphism. Our results show indications of population genetic structure and microstructure differences in karyotypes of the color phenotypes. However, the findings do not clearly back up the hypothesis that there are discrete lineages or evolutionary units among the color phenotypes of S. formosus, but another case of interspecific chromosome stasis cannot be excluded.

Whole genome sequencing identifies candidate genes and mutations that can explain diluted and other colour varieties of domestic canaries (Serinus canaria).

The domestic canary (Serinus canaria) is one of the most common pet birds and has been extensively selected and bred over the last few centuries to constitute many different varieties. Plumage pigmentation is one of the main phenotypic traits that distinguish canary breeds and lines. Feather colours in these birds, similarly to other avian species, are mainly depended on the presence of two major types of pigments: carotenoids and melanins. In this study, we exploited whole genome sequencing (WGS) datasets produced from five canary lines or populations (Black Frosted Yellow, Opal, Onyx, Opal × Onyx and Mogno, some of which carrying different putative dilute alleles), complemented with other WGS datasets retrieved from previous studies, to identify candidate genes that might explain pigmentation variability across canary breeds and varieties. Sequencing data were obtained using a DNA pool-seq approach and genomic data were compared using window-based FST analyses. We identified signatures of selection in genomic regions harbouring genes involved in carotenoid-derived pigmentation variants (CYP2J19, EDC, BCO2 and SCARB1), confirming the results reported by previous works, and identified several other signatures of selection in the correspondence of melanogenesis-related genes (AGRP, ASIP, DCT, EDNRB, KITLG, MITF, MLPH, SLC45A2, TYRP1 and ZEB2). Two putative causative mutations were identified in the MLPH gene that may explain the Opal and Onyx dilute mutant alleles. Other signatures of selection were also identified that might explain additional phenotypic differences between the investigated canary populations.