Color Pattern Research Articles

The first record of the alpheid shrimp Automate isabelae Ramos-Tafur, 2018 from Brazil (Decapoda: Caridea)

The alpheid shrimp Automate isabelae Ramos-Tafur, 2018 was described based on material found in stomachs of the lane snapper Lutjanus synagris (L.) in the Florida Keys and south-western coast of Florida, USA (24°N). In the present study, A. isabelae is reported from Araçá Bay, São Sebastião, São Paulo, Brazil (23°S), the first time since its original description, representing the first record of the species for the south-western Atlantic. The colour pattern of A. isabelae is illustrated for the first time. The differentiating characters between A. isabelae and its presumed eastern Pacific sister species A. rugosa Coutière, 1902 are discussed.

Addressing cities’ color issues and planning urban colors with regional features to preserve the history and culture of cities: the case of Suzhou, Wuxi, and Changzhou (China)

ABSTRACT Although there are many remarkable examples of color traditions from different parts of the world, many cities still face color-related issues, such as lack of regionality and clutter. Since the color issues of different cities vary, the solutions must also be different. This paper examines the old urban areas of Suzhou, Wuxi, and Changzhou in China as a case study to investigate how to solve urban color problems and shape the architectural color with regional characteristics. By exploring the spatial distribution of color categories and the interval distribution of color attribute values, this paper finds that the increase in colored buildings (especially along the main roads) and the excessive chromaticity of new buildings affect the regionality of urban colors. Therefore, we propose restoring urban color by establishing color zoning and controlling chromaticity to increase cultural diversity, promote economic vitality, and enhance people’s sense of belonging. The planning of urban color and the establishment of color patterns with regional characteristics are of positive significance for the development of urban history, culture, and habitat.

PMEL is involved in snake colour pattern transition from blotches to stripes

Corn snakes are emerging models for animal colouration studies. Here, we focus on the Terrazzo morph, whose skin pattern is characterized by stripes rather than blotches. Using genome mapping, we discover a disruptive mutation in the coding region of the Premelanosome protein (PMEL) gene. Our transcriptomic analyses reveal that PMEL expression is significantly downregulated in Terrazzo embryonic tissues. We produce corn snake PMEL knockouts, which present a comparable colouration phenotype to Terrazzo and the subcellular structure of their melanosomes and xanthosomes is also similarly impacted. Our single-cell expression analyses of wild-type embryonic dorsal skin demonstrate that all chromatophore progenitors express PMEL at varying levels. Finally, we show that in wild-type embryos PMEL-expressing cells are initially uniformly spread before forming aggregates and eventually blotches, as seen in the adults. In Terrazzo embryos, the aggregates fail to form. Our results provide insights into the mechanisms governing colouration patterning in reptiles.

Color Analysis of Brocade from the 4th to 8th Centuries Driven by Image-Based Matching Network Modeling

To achieve the color matching rules for the textiles discovered during Silk Road excavations between the 4th and 8th centuries, this research proposed an image-based matching network modeling method. The Silk Road facilitated trade and cultural exchange between the East and West, and the textiles found along the way depict the development of fabrics in a color scheme with great cultural significance. A total of 165 images with brocade patterns were collected from a book with a detailed description of the Western influences on textiles along the Silk Road. Two different clustering methods, including the K-means clustering method and octree quantization approach, were used to extract the primary and secondary colors. By combining the HSV color space with the PCCS color system, the color distribution was analyzed to discover the features of representative color patterns. The co-occurrence relationship of the auxiliary colors was explored using the Apriori algorithm, and a total of eight association rules were established. The results showed that the K-means clustering algorithm can show a better effect of color classification to obtain three primary colors and nine secondary colors. The matching mechanism with a visualized network model was also proposed, which showed that reddish-yellow tones are the main colors in the brocade patterns, and the light and soft tones separately account for 27% and 20%. Beige and brown are the most common colorways, with a confidence level of 47%. One style of brocade pattern was used to demonstrate different appearances within various color networks, which could be applied to 3D virtual fitting. This image-based matching network modeling approach makes the color matching schemes visible, and can assist fashion design with fabric features influenced by historical and cultural development.

A new species of Anthopleura (Cnidaria: Anthozoa: Actiniaria) from the Mexican Pacific

Anthopleura is one of the most speciose genera within the family Actiniidae. This genus is particularly characterized by its members having both verrucae on the column and acrorhagi on the margin. In the region of the Baja California Peninsula, in the Mexican Pacific, six species of Anthopleura have been documented, which are relatively well defined by their morphological characteristics and coloration patterns. During recent visits to the intertidal zone of Cerritos, in Baja California Sur, we found individuals of Anthopleura displaying a variety of colorations that do not agree with known species for the region. We collected and examined specimens of four morphotypes of Anthopleura, analyzing them by integrating information about their external and internal anatomy, as well as their cnidome. Additionally, we obtained and analyzed genetic sequences from mitochondrial and nuclear markers through phylogenetic analyses. Our results reveal that the four morphotypes belong to a single, and undescribed species of Anthopleura. We provide a detailed description of the species Anthopleura variata sp. nov., which is characterized by a variety of coloration patterns, as well as having a circumscribed, palmate, and pedunculate marginal sphincter muscle, harboring zooxanthellae, and lacking directive mesenteries, among other characteristics. Anthopleura variata sp. nov. is the 49th species in the genus and the seventh species of Anthopleura documented for the Mexican Pacific.

Antibody-Mediated Protein Knockdown Reveals Distal-less Functions for Eyespots and Parafocal Elements in Butterfly Wing Color Pattern Development.

One of the important genes for eyespot development in butterfly wings is Distal-less. Its function has been evaluated via several methods, including CRISPR/Cas9 genome editing. However, functional inhibition may be performed at the right time at the right place using a different method. Here, we used a novel protein delivery method for pupal wing tissues in vivo to inactivate a target protein, Distal-less, with a polyclonal anti-Distal-less antibody using the blue pansy butterfly Junonia orithya. We first demonstrated that various antibodies including the anti-Distal-less antibody were delivered to wing epithelial cells in vivo in this species. Treatment with the anti-Distal-less antibody reduced eyespot size, confirming the positive role of Distal-less in eyespot development. The treatment eliminated or deformed a parafocal element, suggesting a positive role of Distal-less in the development of the parafocal element. This result also suggested the integrity of an eyespot and its corresponding parafocal element as the border symmetry system. Taken together, these findings demonstrate that the antibody-mediated protein knockdown method is a useful tool for functional assays of proteins, such as Distal-less, expressed in pupal wing tissues, and that Distal-less functions for eyespots and parafocal elements in butterfly wing color pattern development.

Description of the sixth known species from the genus Nanopsocus Pearman, 1928 (Insecta: Psocodea) from Zanzibar

This study describes a new species, Nanopsocus ajabu n. sp., discovered on Unguja Island, Zanzibar. The species exhibits unique morphological characteristics and complex colour patterns. Material was collected and examined following standard protocols, with specimen deposited at the National Museum of Natural History, Sofia, Bulgaria. An identification key for all known Nanopsocus species is provided.

A new cockroach (Blattodea, Rhipidoblattinidae) from the Toarcian (Lower Jurassic) of Alderton Hill, Gloucestershire, UK, and the earliest likely occurrence of aposematic colouration in cockroaches

AbstractWe describe the seventh valid species of cockroach, Alderblattina simmsi gen. et sp. nov., from insect‐rich strata recording the Toarcian Oceanic Anoxic Event (T‐OAE). The T‐OAE represents a period of extreme global warming and environmental change that drove palaeoecological pressures and evolutionary changes in marine and terrestrial ecosystems. Here, for the first time, we present evidence that this event may also be the driver for the evolution of aposematic colouration, a predator deterrent, in cockroaches. The specimen, an isolated compressed tegmen, was collected at Alderton Hill, Gloucestershire, UK, and is assigned to a new genus and species, based on the following unique combination of characteristics: small forewing; 15 branches of R and 11 branches of M + CuA; strong cross‐vein between R and M; intercalaries; and two well‐defined subspherical maculae (spots) and colouration at the wing tip. Alderblattina simmsi is assigned to the family Rhipidoblattinidae Rohdendorf, primarily based on its small size and the presence of branched anal veins in the clavus. The colouration present on A. simmsi represents the first recorded likely occurrence of aposematism in cockroaches, and provides evidence for the evolution of colour patterning in Blattodea.

Anti-proliferative activities of Carthamidin mediated gold nanoparticles against breast cancer: An in-vitro approach

Natural pigments have unique commercial properties and are a versatile resource. Additionally, these pigments have potent therapeutic qualities that could be developed into a medication. With this rationale, a simple one-pot synthesis of gold nanoparticles (AuNPs) was achieved using Carthamidin (CT). The synthesis of gold nanoparticles was visually confirmed by the change of color pattern from yellow to dark purple color. The CTAuNPs exhibit Surface Plasmon Resonance at 537 nm in Ultra-Violet Visible Spectroscopy analysis (UV-Vis). The face-centered cubic crystalline nature of CTAuNPs was determined by the X-ray diffraction spectrum. The spherical, polydispersed, stable nanoparticles with an average size of 35 nm are depicted by scanning and transmission electron microscopy and CTAuNPs were stable as determined by zeta potential. The CTAuNPs were evaluated as a cytotoxic agent in the MCF 7 cells using the (3-[4,5-dimethylthiazol-2-yl]-2,5 diphenyltetrazolium bromide) (MTT) method. The assay inhibits the cell proliferation in a dose-dependent manner with an IC50 76.32 µg/mL. Additionally, we used the Reactive Oxygen Species assay, Lactate Dehydrogenase assay, and Acridine Orange/Ethidium Bromide Staining to annotate the apoptosis pattern. These comprehensive assays validate that the MCF 7 cancer cells treated with CTAuNPs underwent apoptosis-mediated cell death. Furthermore, flow cytometry analysis showed that the CTAuNPs stop the cell cycle at the GO/G1 phase in the MCF 7 cells. It is clear from the analyses that CTAuNPs induce apoptosis in MCF 7 cells. As a result, the development of novel pigment-based gold nanoparticles will enhance the nanoparticles as a theranostic agent as a new paradigm to combat breast cancer and resistance.

A long noncoding RNA at the cortex locus controls adaptive coloration in butterflies

Evolutionary variation in the wing pigmentation of butterflies and moths offers striking examples of adaptation by crypsis and mimicry. The cortex locus has been independently mapped as the locus controlling color polymorphisms in 15 lepidopteran species, suggesting that it acts as a genomic hotspot for the diversification of wing patterns, but functional validation through protein-coding knockouts has proven difficult to obtain. Our study unveils the role of a long noncoding RNA (lncRNA) which we name ivory, transcribed from the cortex locus, in modulating color patterning in butterflies. Strikingly, ivory expression prefigures most melanic patterns during pupal development, suggesting an early developmental role in specifying scale identity. To test this, we generated CRISPR mosaic knock-outs in five nymphalid butterfly species and show that ivory mutagenesis yields transformations of dark pigmented scales into white or light-colored scales. Genotyping of Vanessa cardui germline mutants associates these phenotypes to small on-target deletions at the conserved first exon of ivory. In contrast, cortex germline mutant butterflies with confirmed null alleles lack any wing phenotype and exclude a color patterning role for this adjacent gene. Overall, these results show that a lncRNA gene acts as a master switch of color pattern specification and played key roles in the adaptive diversification of wing patterns in butterflies.

Multifunctional electrochromic yarns for variable optical and thermal regulation

In this study, tungsten oxide and polyaniline hybrid films were deposited on the surface of stainless steel yarns by electrochemical deposition, and the electrochromic yarns with double electrochromic layer structure were formed. WO3 acts as a protective layer and binder to connect PANI nanorods, thereby improving electrochemical stability and electrochromic performance. The electrochromic yarns present five color changes in the voltage range of −0.4 V-1.1 V, the optical modulation of 59.98 %, the response time of 0.75 s, the coloration efficiency of 74.89 cm2/C, good electrochemical cycling stability (100 cycles without significant degeneration) and washing durability. At the same time, stable electrochromic behavior is still maintained in the bending state. The device based electrochromic yarns also has reversible multi-color variation, fast reaction time, and long-term stability. What's more, the device can be embroidered or woven into the fabric and designed into patterns of different colors. More color combinations can be achieved by adjusting the voltage. Finally, the fabric based on multifunction electrochromic yarns are used to study the thermal shielding performance. It can effectively block thermal radiation. These results indicate that the electrochromic yarn has promising potential for high-performance optical and thermal regulation applications. This research provides a prospective strategy for constructing multifunctional electronic devices in wearable application.

A new species of the Cambeva variegata group (Siluriformes: Trichomycteridae) from the Serra do Espinhaço, south-eastern Brazil, under severe risk of extinction

The mountain ranges of southeastern and southern Brazil are inhabited by a great diversity of catfishes of the genus Cambeva. The Cambeva variegata group, diagnosed by having a prominent skin crest similar to an adipose fin, an interrupted supraorbital laterosensory canal, with an additional supraorbital S4 pore, and a relatively small premaxilla with an accentuated constriction on its lateral portion, occurs in a broad area of south-eastern Brazil, mostly within the savannah-like Cerrado vegetation at the northern-most part of the genus distribution. The new species described here was collected in streams of the Rio das Velhas drainage, Rio São Francisco basin, draining the Serra do Espinhaço. The new species is diagnosed by having more interopercular odontodes and a combination of morphometric data, colour pattern, relative dorsal-fin origin and vertebra position, and-fin-ray morphology. Field studies indicate that the two localities where the new species occur are being dramatically affected by negative human impacts, putting it in severe risk of extinction.

Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera).

Insects have evolved complex and diverse visual systems in which light-sensing protein molecules called "opsins" couple with a chromophore to form photopigments. Insect photopigments group into three major gene families based on wavelength sensitivity: long wavelength (LW), short wavelength (SW), and ultraviolet wavelength (UV). In this study, we identified 123 opsin sequences from whole-genome assemblies across 25 caddisfly species (Insecta: Trichoptera). We discovered the LW opsins have the most diversity across species and form two separate clades in the opsin gene tree. Conversely, we observed a loss of the SW opsin in half of the trichopteran species in this study, which might be associated with the fact that caddisflies are active during low-light conditions. Lastly, we found a single copy of the UV opsin in all the species in this study, with one exception: Athripsodes cinereus has two copies of the UV opsin and resides within a clade of caddisflies with colorful wing patterns.

Examination of the roles of CgTH in tyrosine metabolism and pigmentation of Pacific oyster (Crassostrea gigas)

The visually appealing shell colours and intricate patterns of shellfish not only attract consumers but also enhance their economic value. Understanding the inheritance pattern of shell colour and the molecular mechanism of pigmentation is highly important for enhancing breeding efficiency. This study involved the identification of a tyrosine hydroxylase gene (CgTH) and the investigation of its function in the metabolism of tyrosine and pigmentation in Pacific oysters (Crassostrea gigas). CgTH contains a conserved Biopterin_H domain that consists of a binding site for iron atoms and a binding site for tetrahydrobiopterin (BH4). Quantitative PCR (qPCR) and immunofluorescence analysis revealed that the expression of CgTH was higher in the mantle of black shell oysters in comparison to the white strain. The in vitro and in vivo experiments confirmed that CgTH is involved in tyrosine metabolism through the catalysis of the conversion of L-tyrosine to L-DOPA. In order to examine its functions in melanin synthesis in oysters, 3-Iodo-L-tyrosine (3-IT) treatment, RNA interference (RNAi), and L-DOPA treatment assays were conducted. The results of our study showed that 3-IT effectively inhibited CgTH activity, leading to a suppression of tyrosine metabolism. Knockdown of CgTH hindered the cAMP-CREM-MITF axis and decreased pigmentation. On the other hand, L-DOPA stimulated melanin production through cAMP signaling and counteracted the inhibitory effects of 3-IT on the metabolism of tyrosine. These data indicated that there may be a feedback loop involving CgTH and the cAMP-CREM-MITF axis that regulates tyrosine metabolism and melanogenesis in Pacific oysters. This study enhances our understanding of the molecular mechanism that governs oyster pigmentation and offers a possible molecular indicator for the targeted breeding of particular strains of Pacific oysters.

Seed color patterns in domesticated common bean are regulated by MYB-bHLH-WD40 transcription factors and temperature.

Seed colors and color patterns are critical for the survival of wild plants and the consumer appeal of crops. In common bean, a major global staple, these patterns are also essential in determining market classes, yet the genetic and environmental control of many pigmentation patterns remains unresolved. In this study, we genetically mapped variation for several important seed pattern loci, including T, Bip, phbw, and Z, which co-segregated with candidate genes PvTTG1, PvMYC1, PvTT8, and PvTT2, respectively. Proteins encoded by these genes are predicted to work together in MYB-bHLH-WD40 (MBW) complexes, propagating flavonoid biosynthesis across the seed coat as observed in Arabidopsis. Whole-genome sequencing of 37 accessions identified mutations, including seven unique parallel mutations in T (PvTTG1) and non-synonymous SNPs in highly conserved residues in bipana (PvMYC1) and z (PvTT2). A 612 bp intron deletion in phbw (PvTT8) eliminated motifs conserved since the Papilionoideae origin and corresponded to a 20-fold reduction in transcript abundance. In multi-location field trials of seven varieties with partial seed coat pigmentation patterning, the pigmented seed coat area correlated positively with ambient temperature, with up to 11-fold increases in the pigmented area from the coolest to the warmest environments. In controlled growth chamber conditions, an increase of 4°C was sufficient to cause pigmentation on an average additional 21% of the seed coat area. Our results shed light on key steps of flavonoid biosynthesis in common bean. They will inform breeding efforts for seed coat color/patterning to improve consumer appeal in this nutritious staple crop.

Bioinspired structural color striped pattern from scalable assembly

Surface patterns are widespread in many organisms, providing the abilities of camouflage, recognition, sexual selection, and survival in creatures. Inspired by these features, structural color stripes over large and complex surfaces were presented based on a meniscus rapidly receding assembly process triggered by lowered pressure and heat. The pattern method allows building blocks to rapidly self-organize into structural color stripes with adjustable morphology and color within several minutes on 2D or complex 3D surfaces. We demonstrate that the structural color striped pattern can be used in anti-counterfeiting, mimicking structural color organisms, and manipulation of stem cell behaviors at multiple levels. This lowered pressure and heat triggered pattern method for engineering scalable structural color stripes provides a powerful tool which cannot be achieved by conventional methods and will promote the wide application of structural color pattern in sensing, artificial robots, anti-counterfeiting, and so on.

Dynamic surface gratings for optical encryption: A simple approach based on azobenzene photoisomerization and solvent engineering

Dynamic diffraction gratings are optical devices that allow for non-mechanical, non-contact and remote on-demand control, and have garnered significant interest in optical encryption. Azobenzene materials are ideal materials for developing dynamic gratings owing to the advantages of fast photo isomerization and good reversibility. It is still challenging to precisely fabricate ordered periodic gratings on the surfaces of azobenzene materials. Here, controllable dynamic grating patterns were successfully fabricated by mask exposure and solvent engineering on azobenzene polyamide acid (PAA-Azo)-solvent system. The movement and mass migration of polymer chains can be regulated by modulating the intermolecular hydrogen bonding and free volume based on different solvents and solvent contents within the system, resulting in the formation of surface gratings with customizable morphology and light-splitting ability. Finally, by regulating the periodicity and amplitude of gratings, colorful dynamic patterns were obtained to monitor the expiration of light-sensitive and short shelf-life products, based on the azobenzene polyamide acid (PAA-Azo)-solvent system. This work provides a new and simple approach for controllable preparation of high-regularity and high-performance dynamic gratings.

Barramundi (Lates calcarifer) rare coloration patterns: a multiomics approach to understand the "panda" phenotype.

The barramundi (Lates calcarifer), a significant aquaculture species, typically displays silver to bronze coloration. However, attention is now drawn to rare variants like the "panda" phenotype, characterized by blotch-like patterns of black (PB) and golden (PG) patches. This phenotype presents an opportunity to explore the molecular mechanisms underlying color variations in teleosts. Unlike stable color patterns in many fish, the "panda" variant demonstrates phenotypic plasticity, responding dynamically to unknown cues. We propose a complex interplay of genetic factors and epigenetic modifications, focusing on DNA methylation. Through a multiomics approach, we analyze transcriptomic and methylation patterns between PB and PG patches. Our study reveals differential gene expression related to melanosome trafficking and chromatophore differentiation. Although the specific gene responsible for the PB-PG difference remains elusive, candidate genes like asip1, asip2, mlph, and mreg have been identified. Methylation emerges as a potential contributor to the "panda" phenotype, with changes in gene promoters like hand2 and dynamin possibly influencing coloration. This research lays the groundwork for further exploration into rare barramundi color patterns, enhancing our understanding of color diversity in teleosts. Additionally, it underscores the "panda" phenotype's potential as a model for studying adult skin coloration.

A comprehensive review of current practices, challenges, and future perspectives in Koi fish (Cyprinus carpio var. koi) cultivation.

The Koi fish (Cyprinus carpio var. koi) is an ornamental fish with a high selling value because of its attractive colors, color patterns, body shape, and swimming motion. Koi fish is extensively traded in the international fish market because of their popularity among hobbyists from numerous countries worldwide. This review discusses various aspects of Koi fish cultivation, including genetic involvement, selective breeding strategies, and management systems. By examining crucial factors such as water parameters, technological innovations, and evolving cultivation methods, this review explored their influence on the quality of Koi fish. Breakthrough technologies, such as ornamental fish warehousing and recirculation aquaculture systems, enhance breeding efficiency and profitability. Molecular sexing, feed optimization, and color enhancement strategies are central to pursuing superior Koi fish. Reproduction management, disease prevention, and risk reduction during transport underscore ongoing efforts to ensure their survival. Despite notable progress, several challenges remain, including limited genetic studies, gaps in disease research, and unexplored herbal alternatives. The active involvement of hobbyists and breeders in research initiatives is a pivotal force in unlocking the untapped potential. The holistic approaches to enhance production efficiency and improve care standards require further exploration, paving the way for a sustainable future in the evolving management of Koi fish cultivation.

Why are the inner and outer sides of many flower petals differently coloured?

The flower perianth has various, non-mutually exclusive functions, such as visual signalling to pollinators and protecting the reproductive organs from the elements and from florivores, but how different perianth structures and their different sides play a role in these functions is unclear. Intriguingly, in many species there is a clear colour difference between the different sides of the perianth, with colour patterns or pigmentation present on only one side. Any adaptive benefit from such colour asymmetry is unclear, as is how the asymmetry evolved. In this viewpoint paper, we address the phenomenon of flowers with differently coloured inner and outer perianth sides, focusing on petals of erect flowers. Guided by existing literature and our own observations, we delineate three non-mutually exclusive evolutionary hypotheses that may explain the factors underlying differently coloured perianth sides. The pollen-protection hypothesis predicts that the outer side of petals contributes to protect pollen against UV radiation, especially during the bud stage. The herbivore-avoidance hypothesis predicts that the outer side of petals reduces the flower's visibility to herbivores. The signalling-to-pollinators hypothesis predicts that flower colours evolve to increase conspicuousness to pollinators. The pollen-protection hypothesis, the herbivore-avoidance hypothesis, and the signalling-to-pollinators hypothesis generate largely but not entirely overlapping predictions about the colour of the inner and outer side of the petals. Field and laboratory research is necessary to disentangle the main drivers and adaptive significance of inner-outer petal side colour asymmetry.