Colonization Patterns Research Articles

Vegetation Succession Patterns at Sperry Glacier’s Foreland, Glacier National Park, MT, USA

Plant colonization patterns on deglaciated terrain give insight into the factors influencing alpine ecosystem development. Our objectives were to use a chronosequence, extending from the Little Ice Age (~1850) terminal moraine to the present glacier terminus, and biophysical predictors to characterize vegetation across Sperry Glacier’s foreland—a mid-latitude cirque glacier in Glacier National Park, Montana, USA. We measured diversity metrics (i.e., richness, evenness, and Shannon’s diversity index), percent cover, and community composition in 61 plots. Field observations characterized drainage, concavity, landform features, rock fragments, and geomorphic process domains in each plot. GIS-derived variables contextualized the plots’ aspect, terrain roughness, topographic position, solar radiation, and curvature. Overall, vegetation cover and species richness increased with terrain age, but with colonization gaps compared to other forelands, likely due to extensive bedrock and slow soil development, potentially putting this community at risk of being outpaced by climate change. Generalized linear models revealed the importance of local site factors (e.g., drainage, concavity, and process domain) in explaining species richness and Shannon’s diversity patterns. The relevance of field-measured variables over GIS-derived variables demonstrated the importance of fieldwork in understanding alpine successional patterns and the need for higher-resolution remote sensing analyses to expand these landscape-scale studies.

Distinct Intraspecies Variation of Cutibacterium acnes and Staphylococcus epidermidis in Acne Vulgaris and Healthy Skin

Human skin hosts a diverse array of microorganisms that contribute to its health. Key players in the facial skin microbiome include Cutibacterium acnes and staphylococci, whose colonization patterns may influence dermatological conditions like acne vulgaris. This study examined the facial microbiome composition of 29 individuals, including 14 with moderate to severe acne and 15 with healthy skin, using single locus sequence typing (SLST) amplicon sequencing. The results showed a shift in the relative abundances of C. acnes phylotypes: SLST types A, C, and F were increased in acne, while types H, K, and L were reduced compared to healthy skin. Among staphylococci, the relative abundance of S. epidermidis, S. capitis, and S. saphrophyticus increased in acne, while S. saccharolyticus and S. hominis decreased. The amplicon sequencing approach could also identify a population shift of S. epidermidis: a specific S. epidermidis phylogenetic lineage (type 3) was reduced in acne, while two abundant lineages (types 1 and 2) were elevated. These findings suggest that distinct phylogenetic lineages of both C. acnes and S. epidermidis are linked to healthy versus diseased skin, highlighting a potential role for both microorganisms in disease prevention and aggravation, respectively.

Biofilm formation by the plant growth promoting bacterium Bacillus cereus (EB-40).

The objective of this work was to investigate the biofilm production capacity of the isolate EB-40 (Bacillus cereus) in a culture medium for the multiplication of microorganisms and in roots of in vitro grown banana explants. It was observed that the isolate was able to produce biofilms in tryptone, soy and agar (TSA) culture medium and in the roots of explants. The format, architecture and location of the biofilms in TSA culture medium presented an exopolymer matrix formed by EB-40 presented coccoid bacillary cells and fibrillar structures. In roots explants was verified the formation of microcolonies adhered to the root hairs. The information obtained in this experiment allowed inferring the ability of the isolate to produce biofilms and the colonization pattern shown when associated with banana tree roots.

Distinct relative abundances in pathogens detected in mechanically ventilated patients with suspected pneumonia in the intensive care unit at King Abdulaziz University Hospital

In this study, we present for the first time the landscape of the lung microbiota in patients with ventilator-associated pneumonia in Intensive Care Units in Saudi Arabia. DNA from 83 deep endotracheal aspirate lung samples was subjected to PacBio sequencing to identify pathogens in comparison with conventional diagnostic techniques. Patients on ventilation with pneumonia presented with similar lung flora to those of patients on ventilation without pneumonia. Proteobacteria, Firmicutes, and Bacteroidetes were detected in the majority of the samples. Samples treated with different antibiotics exhibited similar abundances of phyla and families. In order, the ten most common species detected in 16 clusters were Klebsiella pneumoniae, Stenotrophomonas maltophilia, Haemophilus influenzae, Pseudomonas aeruginosa, Metamycoplasma salivarium, Elizabethkingia anophilis, Staphylococcus aureus, Acinetobacter baumannii, Prevotella oris and Klebsiella africana. Of 51 on ventilation with pneumonia, the pathogens identified through sequencing corresponded with the findings from culture-dependent tests in 26 patients (50.98%), whereas the results differed in 30 patients (58.82%). Of 32 patients on ventilation without pneumonia, the pathogens identified through sequencing matched the conventional diagnostics results in only two patients (6.25%) but differed in 25 patients (78.13%). In summary, patients on mechanical ventilation with pneumonia did not display notable phenotypic traits. K. pneumoniae and S. maltophilia were the most common taxa detected in the samples, although some variations in microbial composition were observed. We conclude that Intensive Care Units exhibit distinct patterns of microbial colonization.

Antimicrobial Resistance Patterns and Biofilm Analysis via Sonication in Intensive Care Unit Patients at a County Emergency Hospital in Romania

Background/Objectives: Ventilator-associated pneumonia (VAP) remains a critical challenge in ICU settings, often driven by the biofilm-mediated bacterial colonization of endotracheal tubes (ETTs). This study investigates antimicrobial resistance patterns and biofilm dynamics in ICU patients, focusing on microbial colonization and resistance trends in tracheal aspirates and endotracheal tube biofilms at a county emergency hospital in Romania. Methods: We conducted a longitudinal analysis of ICU patients requiring mechanical ventilation for more than 48 h. Tracheal aspirates and ETT biofilms were collected at three key time points: T1 (baseline), T2 (48 h post-intubation with ETT replacement), and T3 (92–100 h post-T2); these were analyzed using sonication and microbiological techniques to assess microbial colonization and antimicrobial resistance patterns. Results: In a total of 30 patients, bacteria from the ESKAPEE group (e.g., Klebsiella pneumoniae, Acinetobacter baumannii, Staphylococcus aureus) dominated the microbiota, increasing their prevalence over time. Resistance to carbapenems, colistin, and vancomycin was notably observed, particularly among K. pneumoniae and A. baumannii. Biofilm analysis revealed high persistence rates and the emergence of multidrug-resistant strains, underscoring the role of ETTs as reservoirs for resistant pathogens. The replacement of ETTs at T2 correlated with a shift in microbial composition and reduced biofilm-associated contamination. Conclusions: This study highlights the temporal evolution of antimicrobial resistance and biofilm-associated colonization in a limited number of ICU patients (30 patients). The findings support implementing routine ETT management strategies, including scheduled replacements and advanced biofilm-disruption techniques, to mitigate VAP risk and improve patient outcomes.

Macroinvertebrate colonisation of macroplastic litter in minimally disturbed river sites, Eastern Cape, South Africa

Macroplastic pollution remains a growing global environmental concern, and our understanding of its interaction with aquatic organisms is underdeveloped. It is also less clear how hydraulic biotopes influence macroinvertebrates colonisation of macroplastic relative to natural substrates. We investigated temporal and spatial patterns of macroinvertebrate colonisation on macroplastic litters in contrasting stream hydraulic biotopes (riffle, pool, and run) in minimally impacted headwater streams of Eastern Cape, South Africa. Plastic substrates of different proportions of natural and plastic litter were deployed across four sites. The Substrate group included 100% natural substrates (NS), 50% natural material and 50% plastic litters (NP), and 100% plastic (PD) litters. Each substrate group was deployed in riffle, pool, and run habitats for six months at each site. Across hydraulic biotopes, macroinvertebrate colonised substrate groups equally (PERMANOVA, p > 0.05). Macroinvertebrate diversity indices were statistically different across substrate groups in pools but not in other hydraulic habitats (PERMANOVA, p < 0.05). We observed that NS had significantly higher macroinvertebrate Margalef’s richness, Shannon, and Simpson diversity values than macroplastic substrates in pools. This difference suggests that specific-hydraulic biotope characteristics, such as sediment accretion and stream discharge, influence macroinvertebrate diversities. However, the dominant taxa had a marked presence in all substrate groups within hydraulic biotopes throughout the study, resulting in temporal variance that was not significant. Our findings highlight the importance of hydraulic biotope influence on macroinvertebrate colonisation of macroplastic substrates. It also provides a baseline for further research involving riverine macroplastic pollution.

Spatial variations in the microbiota: comparative analysis of microbial composition and predicted functions across different intestinal segments and feces in donkeys.

Donkeys, as single-stomach herbivores, have a complex and diverse microbial community in their digestive tracts. The intestinal bacterial community is crucial for maintaining intestinal homeostasis, as well as the host's overall nutrition and health. However, research on donkey gut microbes is relatively limited, particularly regarding the microbial colonization patterns in different intestinal segments of adult donkeys. Therefore, this study examined the abundance and function of microbiota across various sites of the intestinal tract (duodenum, jejunum, ileum, cecum, colon) and feces of healthy adult Dezhou male donkeys using 16S rRNA gene sequencing and PICRUSt analysis. The results indicate that donkeys have a rich gut microbial diversity and a large microbial population. No significant differences in the indices of alpha diversity were observed among the donkey's duodenum, jejunum, ileum, cecum, colon, and feces. A Venn diagram analysis revealed the presence of both unique (Duodenum: 4645; Jejunum: 3586; Ileum: 4904; Cecum: 4253; Colon: 6135; Feces: 4885) and shared (339) ASVs among the different sections. A principal coordinate analysis (PCoA) revealed significant differences (R2 = 0.2076, p < 0.007) across the six intestinal segments of the donkeys. At the phylum level, Firmicutes (63.64%), Bacteroidetes (20.72%), Verrucomicrobiota (9.16%), Patescibacteria (1.95%), Spirochaetota (1.87%), Actinobacteriota (1.13%), and Proteobacteria (0.42%) were the dominant bacteria in all samples. The Wilcoxon rank-sum test revealed significant differences in the proportions of genera among different intestinal segments. Specific genera were significantly enriched in various segments: Lachnospiraceae_UCG-008 and Sphaerochaeta in the duodenum; Christensenellaceae_R-7_group and Bacillus in the jejunum; NK4A214_group and Alloprevotella in the ileum; UCG-005 and Lactobacillus in the cecum; Clostridium_sensu_stricto_1 and Chlamydia in the colon; and Rikenellaceae_RC9_gut_group and Prevotellaceae_UCG-004 in the feces. A PICRUSt2 functional prediction analysis indicated that carbohydrate metabolism, prokaryotic cellular communities, antimicrobial drug resistance, immune diseases, membrane transport, signal transduction, and transcription exhibited significant differences among the different intestinal segments. This study provided critical primary data on the differences in donkey gut microbiota and the synergistic effects between gut microbiota and host functions. These findings can be used to assess donkey health status, improve breeding, and develop microbial additives.

Hybrid Pennisetum colonization by Bacillus megaterium BM18-2 labeled with green fluorescent protein (GFP) under Cd stress

Researchers have reported that Bacillus megaterium BM18-2 reduces Cd toxicity in Hybrid Pennisetum, but understanding the interaction between plants and associated endophytes is crucial for understanding phytoremediation strategies under heavy metal stress. The current study aims to monitor the colonization patterns of GFP-labeled endophytic bacteria BM18-2 on Hybrid Pennisetum grass. Additionally, it will monitor Cd’s effect on plant bacterial colonization. Confocal laser scanning microscopy of plant roots infected with gfp tagged BM18-2 revealed that the bacterium colonised root hairs and epidermal cells at the early stage of colonization, and over time, the bacteria penetrated to the internal tissues following their colonization of the stem and leaf. The roots, stems, and leaves of H. Pennisetum grown in Cd-contaminated soil contained a higher number of bacteria than those grown in normal soil. The result of Cd translocation indicated the condensation of heavy metals in the root cells and stem, while no Cd was found in the leaf. The study will also look for the enzymatic activity of bacteria BM18-2 and use Leadmium Green AM dye to track how Cd is taken up and moved through the plant. The enzymatic activity results showed that BM18-2 can produce catalase and amylase, but did not record any cellulase or lipase activity. As a result, the pattern of useful endophytic BM18-2 colonization through H. Pennisetum grass will aid in the application and maintenance of these bacteria in farming, and it presents new opportunities for the development of innovative strategies in the fields of agriculture and biotechnology.

The influence of lightning on insect and fungal dynamics in a lowland tropical forest.

Lightning strikes are a common source of disturbance in tropical forests, and a typical strike generates large quantities of dead wood. Lightning-damaged trees are a consistent resource for tropical saproxylic (i.e., dead wood-dependent) organisms, but patterns of consumer colonization and succession following lightning strikes are not known. Here, we documented the occurrence of four common consumer taxa spanning multiple trophic levels-beetles, Azteca ants, termites, and fungi-in lightning strike sites and nearby undamaged control sites over time in a lowland forest of Panama. Beetle abundance was 10 times higher in lightning strike sites than in paired control sites, and beetle assemblages were compositionally distinct. Those in strike sites were initially dominated by bark and ambrosia beetles (Curculionidae: Platypodinae, Scolytinae); bark and ambrosia beetles, and predaceous taxa increased in abundance relatively synchronously. Beetle activity and fungal fruiting bodies, respectively, were 3.8 and 12.2 times more likely to be observed in lightning-damaged trees in strike sites versus undamaged trees in paired control sites, whereas the occurrence probabilities of Azteca ants and termites were similar between damaged trees in lightning strike sites and undamaged trees in control sites. Tree size also was important; larger dead trees in strike sites were more likely to support beetles, termites, and fungal fruiting bodies, and larger trees-regardless of mortality status-were more likely to host Azteca. Beetle presence was associated with higher rates of subsequent fungal presence, providing some evidence of beetle-associated priority effects on colonization patterns. These results suggest that lightning plays a key role in supporting tropical insect and fungal consumers by providing localized patches of suitable habitat. Any climate-driven changes in lightning frequency in tropical forests will likely affect a broad suite of consumer organisms, potentially altering ecosystem-level processes.

Ecological and anthropogenic drivers of local extinction and colonization of giant pandas over the past 30 years.

Understanding the patterns and drivers of species range shifts is essential to disentangle mechanisms driving species' responses to global change. Here, we quantified local extinction and colonization dynamics of giant pandas (Ailuropoda melanoleuca) using occurrence data collected by harnessing the labor of >1000 workers and >60,000 worker days for each of the three periods (TP1: 1985-1988, TP2: 1998-2002, and TP3: 2011-2014), and evaluated how these patterns were associated with (1) protected area, (2) local rarity/abundance, and (3) abiotic factors (i.e., climate, land-use, and topography). We documented a decreased rate (from 0.433 during TP1-TP2 to 0.317 during TP2-TP3) of local extinction and a relatively stable rate (from 0.060 during TP1-TP2 to 0.056 during TP2-TP3) of local colonization through time. Furthermore, the occupancy gains have exceeded losses by a ratio of approximately 1.5 to 1, illustrating an expansion of panda's range at a rate of 1408.3 km2/decade. We also found that pandas were more likely to become locally extinct outside of protected areas, when locally rare in surrounding areas, and when certain biotic conditions were not met (e.g., increased forest cover). Local colonization was less likely in areas with high local rarity, challenging biotic conditions and unprotected area status. As the network of panda reserves expanded and the forest matured, the relative importance of other factors such as climate, biotic factors, and land-use became more influential in determining patterns of local extinction and colonization. Our findings provide insights into the factors governing the expansion of panda's range and illustrate how the relative influence of biotic and abiotic factors can change over time, indicating that effective conservation intervention may be able to mitigate some of the negative impacts of climate change and habitat degradation. This insight extends beyond pandas and highlights the role of conservation interventions can play in building resilience under a changing climate.

Fecal microbiota transplantation: transitioning from chaos and controversial realm to scientific precision era.

With the popularization of modern lifestyles, the spectrum of intestinal diseases has become increasingly diverse, presenting significant challenges in its management. Traditional pharmaceutical interventions have struggled to keep pace with these changes, leaving many patients refractory to conventional pharmaceutical treatments. Fecal microbiota transplantation (FMT) has emerged as a promising therapeutic approach for enterogenic diseases. Still, controversies persist regarding its active constituents, mechanism of action, scheme of treatment evaluation, indications, and contraindications. In this review, we investigated the efficacy of FMT in addressing gastrointestinal and extraintestinal conditions, drawing from follow-up data on over 8000 patients. We systematically addressed the controversies surrounding FMT's clinical application. We delved into key issues such as its technical nature, evaluation methods, microbial restoration mechanisms, and impact on the host-microbiota interactions. Additionally, we explored the potential colonization patterns of FMT-engrafted new microbiota throughout the entire intestine and elucidated the specific pathways through which the new microbiota modulates host immunity, metabolism, and genome.

Native beauveria bassiana isolates: harnessing endophytic capabilities for controlling fall armyworm infestation in maize

ABSTRACT This study investigates the establishment and colonization dynamics of Beauveria bassiana as an endophyte in maize plants using various inoculation methods. Surface sterilization and fungal isolation confirmed B. bassiana as an endophyte, with isolates ChBb and NaBb exhibiting distinct colonization patterns. Notably, foliar spray demonstrated the highest initial colonization efficiency, with ChBb achieving 93.3% in leaves at 7 days post-inoculation (DPI), decreasing to 13.3% at 35 DPI. NaBb similarly exhibited high initial colonization via foliar spray, with 93.3% in leaves at 7 DPI, declining to 33.3% at 35 DPI. Molecular analysis using nested PCR confirmed the presence of B. bassiana DNA exclusively in treated tissues, with a consistent 300 bp PCR product observed in leaf, stem, and root samples. Phylogenetic analysis highlighted genetic relationships among B. bassiana isolates, underscoring their diversity and potential for biocontrol applications. Pathogenicity tests against Spodoptera frugiperda demonstrated significant mortality rates: ChBb achieved 77.20% mortality in direct contact assays (where larvae were exposed directly to the fungal spores) and 56.82% mortality in vivo (where larvae were fed plants colonized by the fungus), while NaBb resulted in 75.86% and 51.42% mortality, respectively. These findings emphasize the efficacy of B. bassiana as a biocontrol agent, particularly through foliar application for initial colonization in maize plants.

Longitudinal prevalence and co-carriage of pathogens associated with nursing home acquired pneumonia in three long-term care facilities.

Nursing home acquired pneumonia (NHAP), and its subset - aspiration-associated pneumonia, is a leading cause of morbidity and mortality among residents in long-term care facilities (LTCFs). Understanding colonization dynamics of respiratory pathogens in LTCF residents is essential for effective infection control. This study examines the longitudinal trends in prevalence, persistence, bacterial load, and co-colonization patterns of five respiratory pathogens in three LTCFs in Phoenix, Arizona. Anterior nares and oral swabs were collected every other week and tested using qPCR for Haemophilus influenzae, Pseudomonas aeruginosa, Streptococcus pneumoniae, Staphylococcus aureus , and Chlamydia pneumoniae . Weekly average positivity rates were 17.75% for H. influenzae (0% - 39.39%), 9.95% for P. aeruginosa (0% - 37.74%), 31.89% for S. pneumoniae (1.79% - 41.67%), and for 28.00% for S. aureus (0% - 55.36%). C. pneumoniae was not detected. H. influenzae and S. pneumoniae predominantly colonized the oral cavity, while P. aeruginosa and S. aureus predominantly colonized the nasal cavity. S. pneumoniae and S. aureus colonizations were significantly more persistent than H. influenzae and P. aeruginosa , with persistence correlating with significantly higher bacterial loads. Co-colonization did occur in ∼20% of positive samples, but appeared to be due to random chance. This study reveals distinct colonization patterns among respiratory pathogens in LTCF residents, highlighting differences in site-specific prevalence, persistence, and bacterial load. These findings underscore the importance of longitudinal monitoring to inform targeted infection control strategies in LTCFs.

Tracing Staphylococcus capitis and Staphylococcus epidermidis strains causing septicemia in extremely preterm infants to the skin, mouth, and gut microbiota.

Septicemia is a major cause of morbidity in preterm infants. Coagulase-negative staphylococci (CoNS) can colonize skin, oral cavity, and intestines and are a common cause of septicemia in this group. The relation between CoNS colonization pattern at the species and strain level and septicemia has scarcely been studied. We mapped colonization of the skin, oral cavity, and intestines by CoNS species in extremely preterm infants and speciated and strain-typed the skin, mucosal, and blood isolates. Two-thirds of the CoNS septicemia blood strains, including a majority of S. capitis strains belonging to the NRCS-A clone, were tracked to the commensal microbiota. We demonstrated that CoNS species differ in their colonization patterns, whereby S. capitis was primarily a skin colonizer. However, its colonization of the oral cavity was enhanced among infants developing septicemia. Our study provides a starting point for further explorations of the relationship between CoNS colonization and septicemia in preterm infants.

Effect of Skin-to-Skin Care on the Day of Birth on Skin Colonization in Preterm Infants: A Pre- and Post-Implementation Study.

Maternal skin-to-skin contact (MSSC) in neonates has been shown to reduce nosocomial infections. In preterm infants, exposure to maternal skin commensals within the first 24 h may prevent colonization by hospital-acquired pathogens. However, the impact of early MSSC on skin colonization in preterm infants is unknown. Our aim was to compare skin colonization patterns on days 2, 3, and 7 of life in preterm infants (280/7 to 316/7 weeks gestational age) who received MSSC within the first 24 h from birth with those who did not. The primary outcome was the rate of skin colonization with bacterial pathogens. The secondary outcome was the rate of Staphylococcus aureus colonization. This prospective pre- and post-implementation study was conducted at Mount Sinai Hospital, Toronto. Skin swabs were obtained at 24-36 h, 48-72 h, and day 7 of life. Infant mouth and rectal swabs were collected on day 7. Maternal nasal-rectal swabs were obtained at any time from recruitment to day 7. Twenty-seven infants were included in the pre-implementation group and seventeen were included in the post-implementation group, respectively. Post-implementation infants received an increased duration of SSC during the first week. No differences in colonization with pathogens vs. commensals or Staphylococcus aureus colonization were observed between groups at any time point. Skin was fully colonized in both groups by day 7. No differences in skin colonization patterns were identified in the first week of life for preterm infants receiving early MSSC. Larger studies with longitudinal data are needed to further evaluate the impact of MSSC on skin colonization.

Investigating the Translational Value of Periprosthetic Joint Infection Models to Determine the Risk and Severity of Staphylococcal Biofilms.

With the advent of antibiotic-eluting polymeric materials for targeting recalcitrant infections, using preclinical models to study biofilms are crucial for improving the treatment efficacy in periprosthetic joint infections. The stratification of risk and severity of infections is needed to develop an effective clinical dosing framework with better treatment outcomes. We use in vivo and in vitro implant-associated infection models to demonstrate that methicillin-sensitive and resistant Staphylococcus aureus (MSSA and MRSA) have model-dependent distinct implant and peri-implant tissue colonization patterns. The maturity of biofilms and the location (implant vs tissue) were found to influence the antibiotic susceptibility evolution profiles of MSSA and MRSA, and the models could capture the differing host-microbe interactions in vivo. Gene expression studies revealed the molecular heterogeneity of colonizing bacterial populations. The comparison and stratification of the risk and severity of infection across different preclinical models provided in this study can guide clinical dosing to prevent or treat PJI effectively.

House Sparrow Passer domesticus as an Invasive Bird in Thailand, Natural Dispersion or Introduced Species?

Passer domesticus holds the title of being the most widely distributed bird species globally, originating from Central-East Asia and spreading extensively due to human-mediated activities. While initially established as a native species about 10,000 years ago, their association with human-modified habitats has accelerated their expansion, particularly in urban areas. In Thailand, sightings were initially rare but gradually increased, with the species establishing breeding populations, predominantly in urban and suburban areas. This expansion poses challenges as they compete with native species for resources and nesting sites. This study utilized citizen science data from the eBird platform to investigate the factors influencing the expansion of P. domesticus breeding areas in Thailand. Through occupancy modeling, spatiotemporal patterns of colonization were analyzed, revealing the influence of urbanization, vegetation indices, elevation, and proximity to infrastructure. Results showed a steady increase in territorial occupancy, particularly in urbanized regions, with roads and petrol stations acting as facilitators for dispersal. The study underscores the role of urban expansion in facilitating the spread of P. domesticus, raising concerns about its impact on native bird species and biodiversity in Thailand. Further research is warranted to assess the full extent of its ecological implications and to devise strategies for mitigating its potential adverse effects.

Ecological indicators for restoration success: Development of fish diversity in a large restored floodplain over twelve years

The restoration of rivers and their floodplains is complex, requires substantial financial efforts, intensive stakeholder involvement and long recovery times, making the identification of appropriate ecological indicators for restoration success a key challenge. Herein, one of the largest floodplain restorations along the European Danube was repeatedly assessed over a 12-year period. Changes in the fish community composition in relation to chemical and morphological habitat variables were assessed in all three restored habitat types free-flowing rivers (RS), reconnected oxbows (OS), and small floodplain ponds (FP) which are only temporarily connected to the main stem Danube. Fish species composition of RS, OS, FP and the Danube differed significantly. Species numbers (34 detected in 2022) remained largely constant since the last monitoring in 2013, whereas abundance increased by 15%. Small-bodied target species with short generation times were able to establish populations comprising all size classes shortly after restoration, whilst large-bodied species needed a decade after the restoration for full demographic representation. Highly specialised species such as the rheophilic Chondrostoma nasus used restored RS only during the life stages spawning and juvenile growth. Restoration increased habitat heterogeneity and the initialized hydromorphological processes are still ongoing, supporting the high species diversity. The observed differences in colonization patterns can be explained by species-specific life histories, resulting in diverse short and long-term responses of different fish species and life stages following restoration. Consequently, a comprehensive assessment of restoration success only becomes possible if multiple fish species as ecological indicators are combined in a long-term monitoring.

How the early life microbiome shapes immune programming in childhood asthma and allergies.

Despite advances in our understanding of their diagnosis and treatment, pediatric allergies impose substantial burdens on affected children, families, and healthcare systems. Further, the prevalence of allergic diseases has dramatically increased over the past half-century, leading to additional concerns and concerted efforts to identify the origins, potential predictors and preventions, and therapies of allergic diseases. Together with the increase in allergic diseases, changes in lifestyle and early-life environmental influences have corresponded with changes in colonization patterns of the infant gut microbiome. The gut microbiome plays a key role in developing the immune system, thus greatly influencing the development of allergic disease. In this review, we specifically highlight the importance of the proper maturation and composition of the gut microbiome as an essential step in healthy child development or disease progression. By exploring the intertwined development of the immune system and microbiome across pediatric allergic diseases, we provide insights into potential novel strategies for their prevention and management.

Temperature and Precipitation Explain Bee Diversity on Flowers Along an Elevation Gradient in the Mexican Transition Zone

Although ecologists have identified the key factors influencing species distribution along elevation gradients, each mountain’s distinct characteristics, including its geology and biotic colonization processes, are often overlooked. The uniqueness of each mountain ecosystem implies that species distribution and the factors affecting them may vary across regions and taxonomic groups. The Mexican Transition Zone (MTZ) in central Mexico is a mountainous region of significant ecological and evolutionary importance, shaped by distinct biotic colonization and distribution patterns across its elevation gradient. However, most research in this region has focused on specific taxa, neglecting the vast diversity within the MTZ. In this study, we investigated the variations in flower-visiting bee diversity along an elevation gradient within the MTZ (10 sampling sites distributed from 4 to 3425 m a.s.l..), focusing on understanding the environmental factors influencing their distribution. Our findings reveal a declining bee diversity with increasing elevation, primarily driven by decreasing temperatures. However, when considering bee abundance, we identified precipitation as the predominant factor influencing bee diversity. Therefore, water and resource availability are critical in shaping bee diversity in this region. Furthermore, as elevation increased, we observed distinct and unique bee communities, highlighting the rarity and uniqueness of highland bee species as integral components of mountain ecosystems.