Coat Color Research Articles

Resequencing Analyses Revealed Genetic Diversity and Selection Signatures during Rabbit Breeding and Improvement.

Domestication has shaped the diverse characteristics of rabbits, including coat color, fur structure, body size, and various physiological traits. Utilizing whole-genome resequencing (DNBSEQ-T7), we analyzed the genetic diversity, population structure, and genomic selection across 180 rabbits from 17 distinct breeds to uncover the genetic basis of these traits. We conducted whole-genome sequencing on 17 rabbit breeds, identifying 17,430,184 high-quality SNPs and analyzing genomic diversity, patterns of genomic variation, population structure, and selection signatures related to coat color, coat structure, long hair, body size, reproductive capacity, and disease resistance. Through PCA and NJ tree analyses, distinct clusters emerged among Chinese indigenous rabbits, suggesting varied origins and domestication histories. Selective sweep testing pinpointed regions and genes linked to domestication and key morphological and economic traits, including those affecting coat color (TYR, ASIP), structure (LIPH), body size (INSIG2, GLI3), fertility (EDNRA, SRD5A2), heat stress adaptation (PLCB1), and immune response (SEC31A, CD86, LAP3). Our study identified key genomic signatures of selection related to traits such as coat color, fur structure, body size, and fertility; these findings highlight the genetic basis underlying phenotypic diversification in rabbits and have implications for breeding programs aiming to improve productive, reproductive, and adaptive traits. The detected genomic signatures of selection also provide insights into rabbit domestication and can aid conservation efforts for indigenous breeds.

Colorization strategy for carbon-based electrochromic devices: Achieving visible and mid-infrared regions modulation

Carbon-based materials exhibit unrivaled ability to modulate electromagnetic waves in the infrared band. However, the black appearance restricts the application in the visible light camouflage. This work combines color coatings (consisting mainly of pigments and thermochromic microcapsules) with carbon-based devices and overcomes the high absorption of the color coatings in the mid-infrared band. Ultimately, the obtained white carbon film (W-CNT) device exhibits tunable thermal emissivity from 0.453 to 0.833, maintains a residual modulation range up to 71.7%. In addition, the expansion of the coloration layer to thermochromic microcapsules enables the devices to independently modulate the visible and mid-infrared spectra, further expanding the applicability. We believe that the carbon-based device is valuable for a wide range of applications in camouflage and personal thermal management, which may provide some ideas for designing multispectral independent modulation devices.

Evaluation of print mottle of double coated paper by octave band filtering technique

The effects of the pre-coating color formulation, dwell time, and coat weights of pre- and top- coating layers on print mottle of double-coated paper were investigated using an octave band filtering image processing technique. To investigate the effect of pre-coating color formulations, six types of coating colors were used. Mottle index and coefficient of variance (COV) of double-coated paper increased as the size of pre-coating pigment particles decreased, which was attributed to the reduction in relative pore size of the pre-coating layer. Decreasing the dwell time decreased transfer time from the coating head to dryer of a Maiyoh coater. As the transfer time to dryer decreased, the mottle index and COV increased because of uneven distribution of latex within the coating layer. Pre-coat weight was found to have a greater impact on print mottle than the top-coat weight.

Determination of combining ability and heritability for canning quality traits in common bean

Breeding for common bean (Phaseolus vulgaris L.) genotypes with optimal canning quality holds the potential for increased dry bean consumption among middle-class income urban dwellers in sub-Saharan Africa (SSA). Understanding the genetic control of canning quality traits is central for the improvement of common bean genotypes for desired canning quality. The objective of this study was to determine the combining ability and heritability of canning quality traits (CQTs) in common bean; and to establish entry points for effective breeding for these traits. A population from two contrasting parents for canning quality traits was developed and progressed to F2. The F2:F4 seed was evaluated for CQTs at three months post-harvest. Substantial variation was observed among the canning quality traits tested, including the general appearance of the canned beans, seed coat colour retention namely, clumping, free starch, splitting, and hydration coefficient. Canning quality traits encompassed a spectrum of both additive and non-additive effects. Promising combiners for CQTs were identified among the parents, KK8 and MAC 13, suggesting their potential for utilisation in breeding programmes. Moderate to high Baker’s ratio (BR = 0.41-0.94) values were observed for some CQTs and narrow sense heritability (h2 = 0.47-0.66). Canning quality traits exhibited substantial broad sense heritability (H2) values, ranging from 0.6 to 0.92. These findings provide valuable entry points for breeding programmes focused on improving common bean for canning quality.

Animal factors affecting the cheese-making properties and the heat coagulation time of milk from dairy sheep in a New Zealand flock

ABSTRACT The objective of this study was to evaluate the effect of animal factors on the cheese-making properties and on the heat coagulation time of milk from individual dairy sheep in a New Zealand flock. A total of 521 individual records were obtained from a seasonal pasture-based flock of 169 ewes milked once-a-day, from 50 to 182 days in milk. A statistical model was used to quantify the effects of animal factors (coat colour variety, age, litter size and stage of lactation) on the studied traits. Stage of lactation, confounded with seasonality, strongly influenced all properties of milk investigated. With the advancement of lactation, the milk took longer to coagulate after rennet addition, and the curd was softer. Higher relative cheese yield was achieved towards the end of lactation. The milk was also less stable to high-temperature treatment in late lactation. Coefficient of variation for processability traits was high and ranged from 20.2% to 58%, which can be largely attributed to stage of lactation but could also indicate room for genetic improvement of traits. Further genetic studies are underway to define animal genetic variance, heritability, and the phenotypic and genetic correlations between these processability and milk composition traits.

A new strategy for structural color fabrics: Transfer of photonic crystal coatings from slides to fabrics

The construction of three-dimensional photonic crystals on textile surfaces has emerged as a highly effective method to create fabrics with structural color, generating significant interest among researchers. However, the strict requirements of the substrate fabrics and the challenges associated with patterning coatings for bright structural colors have hindered the widespread application of photonic crystal materials in the textile industry. In this study, we present a strategy for obtaining patterned structural color coatings on fabrics made of different materials. Pre-crystallized poly(styrene-methyl methacrylate-acrylic acid) (P(St-MMA-AA)) liquid photonic crystals (LPCs) are used as raw material for the rapid preparation of solid photonic crystals (SPCs). These SPCs with structural colors are used as templates and transferred to various fabrics through transfer printing techniques. Importantly, the SPCs maintain an ordered face-centered cubic structure both before and after transfer. Such a feature ensures that the processed structural color fabrics exhibit vibrant and iridescent structural colors. This result is achieved by modification of the substrate fabric with viscous polymer and the intact retention of SPCs. The sandwich structure formed by the adhesive polymer on the base fabric and the encapsulation of the film-forming material on the SPCs imparts good stability to the structural color fabric. It is worth noting that patterned photonic crystal coatings can be easily obtained on the fabrics made of different materials (cotton, linen, wool, and silk fabrics) by manipulating the shape of the viscous polymer. Additionally, a wide range of common materials, such as paper, wood, steel, and others, can be used as target substrates. This novel dyeing strategy not only offers new ideas for preparing patterned structural color fabrics but also further promotes the application of photonic crystal materials in textile printing or display.

Morphological Characterization of Kage and Baruwal Sheep (Ovis aries Linnaeus, 1758) Breeds in Nepal

Sheep farming in Nepal is closely linked to its agricultural heritage and contributes to livelihoods and the socio-economic fabric. This study synthesizes the morphological characterization of Kage and Baruwal (Ovis aries Linnaeus, 1758) sheep, highlighting their genetic and functional attributes, including body size, conformation, coat color, horn morphology, and reproductive parameters. This study synthesizes the morphological characterization of Kage and Baruwal (O. aries) sheep, highlighting their genetic and functional attributes, including body size, conformation, coat color, horn morphology, and reproductive parameters. The analysis revealed a significant difference (P ≤ 0.01**) in quantitative traits between the two breeds. The Baruwal sheep exhibited higher mean values for tail length (12.96 ± 0.47 cm), ear length (10.67±0.20 cm), neck length (21.75±0.38 cm), chest girth (67.14±0.50), height at hip bone (64.78±0.44 cm), body weight (33.04±0.65 Kg), and height below withers (67.10±0.56). Additionally, correlation analysis of different quantitative traits was found to be significant at the 0.01 level on a two-tailed test. The study's results indicate significant quantitative variations, which suggest genetic adaptations and selective pressures. The analysis of qualitative traits highlights differences in horn presence, shape, fleece, head color, neckline, and tail shape, providing insights into genetic diversity and functional adaptations. The study concludes that comprehending such phenotypic traits helps with breed management, conservation, and sustainable agriculture. The preservation of genetic diversity and adaptability is underscored by indigenous sheep breeds, which requires further research to elucidate the genetic mechanisms underlying these traits.

ANALIZA ZMIENNOŚCI CECH POKROJU I SKUTECZNOŚCI PRACY HODOWLANEJ U KRÓLIKÓW RAS TERMONDZKI BIAŁY I POPIELNIAŃSKI BIAŁY

The aim of the study was to assess and analyze conformation characteristics and the effectiveness of breeding work in TB and PB rabbits over 10 years. The study determined the variability of conformation traits in two animal herds, as well as their heritability. Additionally, phenotypic trends in conformation traits were estimated. The analysis of variance of conformation traits showed that the year of license had a statistically highly significant impact on: body weight (expressed in grams and points), body structure, breed type, coat color and specific breed characteristics. Gender and race had a statistically significant impact on body weight (g) and coat color. Moreover, race also showed a statistically significant effect on body weight in the scoring. In turn, the farm had a statistically significant impact on: body weight (g), body structure, breed type, coat color and specific breed characteristics. The analysis of conformation characteristics showed that 97.9% of rabbits received positive marks, and 2.1% were disqualified. Only individuals intended for herd improvement were subjected to evaluation. Summarizing the results of the conformation traits analysis, it can be concluded that the rabbits kept on the examined farms underwent proper selection. The animals had very good conformation features. Based on our own research, it was found that rabbit breeding in both of the studied farms was conducted correctly, and the obtained results are satisfactory, both in terms of reproductive and conformatin traits.

Chromosome-level reference genome and resequencing of 322 accessions reveal evolution, genomic imprint and key agronomic traits in adzuki bean.

Adzuki bean (Vigna angularis) is an important legume crop cultivated in over 30 countries worldwide. We developed a high-quality chromosome-level reference genome of adzuki bean cultivar Jingnong6 by combining PacBio Sequel long-read sequencing with short-read and Hi-C technologies. The assembled genome covers 97.8% of the adzuki bean genome with a contig N50 of approximately 16 Mb and a total of 32 738 protein-coding genes. We also generated a comprehensive genome variation map of adzuki bean by whole-genome resequencing (WGRS) of 322 diverse adzuki beans accessions including both wild and cultivated. Furthermore, we have conducted comparative genomics and a genome-wide association study (GWAS) on key agricultural traits to investigate the evolution and domestication. GWAS identified several candidate genes, including VaCycA3;1, VaHB15, VaANR1 and VaBm, that exhibited significant associations with domestication traits. Furthermore, we conducted functional analyses on the roles of VaANR1 and VaBm in regulating seed coat colour. We provided evidence for the highest genetic diversity of wild adzuki (Vigna angularis var. nipponensis) in China with the presence of the most original wild adzuki bean, and the occurrence of domestication process facilitating transition from wild to cultigen. The present study elucidates the genetic basis of adzuki bean domestication traits and provides crucial genomic resources to support future breeding efforts in adzuki bean.

Selection Signatures Reveal Candidate Genes for the Cornish Rex Breed-Specific Phenotype.

Many coat color, behavioral and morphological traits are specific and fixed across cat breeds, with several variants influencing these traits being common among different breeds. In the domestic cat, rexoid mutations have been documented in several breeds. In the Cornish Rex, four bp deletion in the LPAR6 gene has been found to cause a frame shift and a premature stop codon. In addition to the rexoid coat, Cornish Rex cats also have a characteristic head, ear shape and body type. Analysis of the selection signatures in the Cornish Rex genome revealed several regions that are under selective pressure. One of these is located in CFA B4, in the region where the ALX1 gene is located. The ALX1 gene in Burmese cats disrupts the cranial morphogenesis and causes brachycephaly in the heterozygous state. In our study, we confirmed the presence of a deletion in LPAR6 in 20 Cornish Rex and in four F1 hybrids between Cornish Rex and domestic cat. However, we did not confirm the presence of the deletion in ALX1 in Cornish Rex cats. Genome-wide selection signature analysis was performed using ROH islands and integrated haplotype score (iHS) statistics based on publicly available SNP array data of 11 Cornish Rex cats. The selection signatures were detected on chromosomes A1, A3, C2, B1, B4 and D1.

Three HPS5 mutations associated with depigmentation in diverse horse breeds

Depigmentation is a common phenotype in Equus caballus (horse); over 50 identified variants cause white spotting on the skin and coat. HPS5 may influence melanocyte proliferation and mutations in this gene cause depigmentation in humans, mice, and zebrafish. Here we report three equine HPS5 mutations, found in most major breed groups and associated with white spotting. We used a standardized method to quantitatively grade depigmentation, creating a White Score for each horse. We identified associations to each of three variants in HPS5 by comparing the average white score for carriers to that of 41 control horses possessing none of the studied variants. We estimated the functional impact of each mutation using SIFT, GenScan, I-TASSER and cross-species conservation. The first mutation, S1013C termed Eden White 1 (EDXW1), is a missense mutation found to increase average depigmentation by 5.56 points (p = 6.47E-6, n = 70, t-test). Eden White 2 (EDXW2), a missense mutation L560F, increased depigmentation by 9.5 points for individuals with one copy of the variant, but we were unable to phenotype homozygotes (p = 5.55E-16, n = 47, t-test). Eden White 3 (EDXW3), a putative donor splice site mutation at exon 4 + 4, increased white by 5.59 points on average (p = 9.56E-6, n = 101). EDXW1 and EDXW3 are epistatically influenced by MC1R, the gene that controls black vs red coat color in horses. Individuals possessing the dominant E allele produce black pigment, and this allele was associated with higher levels of depigmentation than individuals with the recessive chestnut genotype (e/e) (p = 1.50E-5, p = 1.26E-5 respectively). We tested for epistatic interactions between EDXW1 and Dominant White 20 and found that horses with one copy of each allele had increased average white spotting by 8 points with respect to EDXW1/n or W20/n horses. Compound heterozygotes were significantly more white than horses with one copy of either mutation (p = 7.33E-5), but interactions between other white spotting alleles and EDXW alleles remain to be tested. We propose the convention Eden White (EDXW) for HPS5 mutations in the domestic horse.

Comprehensive whole-genome resequencing unveils genetic diversity and selective signatures of the Xiangdong black goat.

Xiangdong black goats, indigenous to Hunan Province, China, exhibit remarkable adaptation to challenging environments and possess distinct black coat coloration alongside exceptional meat quality attributes. Despite their significance, comprehensive genomic investigations of this breed have been notably lacking. This study involved a comprehensive examination of population structure, genomic diversity, and regions of selection in Xiangdong black goats utilizing whole-genome sequencing data from 20 samples of this breed and 139 published samples from six other Chinese goat breeds. Our genomic analysis revealed a total of 19,133,125 biallelic single nucleotide polymorphisms (SNPs) within the Xiangdong black goat genome, primarily located in intergenic and intronic regions. Population structure analysis indicated that, compared with Jintang, Guizhou and Chengdu goats, Xiangdong black goats exhibit a reduced level of genetic differentiation but exhibit relatively greater divergence from Jining goats. An examination of genetic diversity within Xiangdong black goats revealed a moderate level of diversity, minimal inbreeding, and a substantial effective population size, which are more reflective of random mating patterns than other Chinese goat breeds. Additionally, we applied four distinct selective sweep methods, namely, the composite likelihood ratio (CLR), fixation index (F ST), θ π ratio and cross-population extended haplotype homozygosity (XP-EHH), to identify genomic regions under positive selection and genes associated with fundamental biological processes. The most prominent candidate genes identified in this study are involved in crucial aspects of goat life, including reproduction (CCSER1, PDGFRB, IFT88, LRP1B, STAG1, and SDCCAG8), immunity (DOCK8, IL1R1, and IL7), lactation and milk production (SPP1, TLL1, and ERBB4), hair growth (CHRM2, SDC1, ITCH, and FGF12), and thermoregulation (PDE10A). In summary, our research contributes valuable insights into the genomic characteristics of the Xiangdong black goat, underscoring its importance and utility in future breeding programs and conservation initiatives within the field of animal breeding and genetics.

Evidence of subpopulation diversification and traces of introgression within Canarian camel breed zoometric standard: scope and opportunities for selection

Extant diversity for phenotypic traits is an essential criterion to be considered when ordering priorities for conservation and improvement of animal genetic resources. Concretely, the characterisation of the distinctive body morphometry of a particular group of animals can aid in the design of selective breeding programs, given the strong correlation between body morphology and productive function. The present research aims to characterise an endangered autochthonous camel breed (Canarian camel), mainly relegated to leisure riding, for its body morphology, with a double objective: to explore the phenotypic diversity and structure of the breed for zoometric traits and assess the zoometric profile of this genetic resource that supports its differentiation from other camel breeds. Overall, the results highlight the existence of a high degree of diversity, which may be linked to genetic factors for zoometric traits in an endangered autochthonous breed with traditional in situ breeding schemes, which predicts the success of the implementation of genetic improvement schemes for such functional characteristics. This phenotypic diversity in body morphology could also be a tool for the evaluation of new functional niches within the efforts of functional valorisation of this camel breed for its sustainable conservation. Body morphology traits in the studied camel breed are significantly influenced by sex, physiological status and coat colour.

Yield performance of mutant blackgram variety Binamash-2 over locations in Bangladesh

Blackgram is one of the most important pulse crops extensively grown in Bangladesh with multiple uses. An experiment was conducted to examine the suitability and productivity of a gamma irradiated pulse variety Binamash-2 in Kharif-II season for two consecutive years 2021 and 2022 over four locations, Mymensingh, Chapainawabganj, Gopalganj and Magura districts. The experiment was consisted of two varieties viz. Binamash-2 and BARI Mash-3. Binamash-2 produced higher seed yield than BARI mash3 at all four locations. Binamash-2 produced bolder seeds with early maturity than BARI mash3. The seed coat color and size of Binamash-2 was more attractive than BARI mash3 and farmers of four studied areas are very much interested to cultivate Binamash-2 in the upcoming years. Bangladesh J. Nuclear Agric, 37(2): 153-159, 2023

Taking a color photo: A homozygous 25-bp deletion in Bace2 may cause brown-and-white coat color in giant pandas

Brown-and-white giant pandas (hereafter brown pandas) are distinct coat color mutants found exclusively in the Qinling Mountains, Shaanxi, China. However, its genetic mechanism has remained unclear since their discovery in 1985. Here, we identified the genetic basis for this coat color variation using a combination of field ecological data, population genomic data, and a CRISPR-Cas9 knockout mouse model. We de novo assembled a long-read-based giant panda genome and resequenced the genomes of 35 giant pandas, including two brown pandas and two family trios associated with a brown panda. We identified a homozygous 25-bp deletion in the first exon of Bace2, a gene encoding amyloid precursor protein cleaving enzyme, as the most likely genetic basis for brown-and-white coat color. This deletion was further validated using PCR and Sanger sequencing of another 192 black giant pandas and CRISPR-Cas9 edited knockout mice. Our investigation revealed that this mutation reduced the number and size of melanosomes of the hairs in knockout mice and possibly in the brown panda, further leading to the hypopigmentation. These findings provide unique insights into the genetic basis of coat color variation in wild animals.

82 Effects of a red-clover containing mineral on heifer behavior and fertility

Abstract Heat stress reduces reproductive efficiency in beef cattle. Recent evidence suggests that supplementation of red clover can alleviate the physiological impacts of fescue toxicosis which could decrease heat stress. Our objective was to determine the effect of supplementing heifers grazing endophyte-infected tall fescue (E+ TF) with a conventional mineral containing red-clover leaf. We hypothesized that heifers supplemented with the red-clover leaf mineral would have greater conception rates to AI (CRAI) in times of possible heat stress compared with heifers supplemented with conventional mineral. A grazing study was conducted from May – August in 2021, 2022, and 2023. Yearling beef heifers (n = 32, 36, 40 heifers yr-1, respectively) were blocked by body weight, hair coat score and color into 4 grazing blocks that were assigned to 1 of 2 treatments (2 blocks treatment-1): 1. conventional non-medicated loose mineral control (0%-RC), or 2. conventional loose mineral + 20% wt/wt red clover leaf (20%-RC). Mineral treatments were provided in ground, 3-compartment mineral feeders ad libitum. Each grazing block was assigned to four, 0.8- ha. pastures consisting of predominantly E+ TF and were rotationally managed over the course of the study. Each year estrus was synchronized suitable for fixed time AI in May and all heifers resynchronized in June. In addition, each heifer was fitted with an ear-tag sensor (CowManager SensOor, Agis Automatisering BV, Harmelen, the Netherlands) for continuous behavioral monitoring (including high activity and activity). The CRAI were analyzed with the GLIMMIX procedure of SAS using the binomial distribution link logit function (v.9.4., SAS Inst. Inc., Cary, NC). Total daily activity and high activity reported by CowManger during May and June were analyzed by the MIXED procedure with repeated measures of SAS. The CRAI were similar for 20%-RC (67.30 ± 9.80%) and 0%-RC (60.70 ± 9.80%) heifers following the first service of AI (P = 0.51) during a thermoneutral period in May. In contrast, CRAI was greater (P = 0.02) for 20%-RC heifers (48.67 ± 13.47%) than CM (15.10 ± 13.47%) in June when temperatures increased to potential heat stress levels. Overall, conception rate after two rounds of AI for 20%-RC (78.30 ± 9.30%) heifers tended to be greater (P = 0.08) than CM (62.20 ± 9.30 %). While high activity (associated with estrous behavior) reported by CowManager did not differ between treatments (20%-RC: 203.94; 0%-RC: 213.90; SEM: 8.65 min d-1; P = 0.25), normal daily activity of 20%-RC heifers (150.69 ± 10.40 min d-1) tended to be greater (P = 0.06) than CM (126.33 ± 8.65 min d-1). Results of this study suggest supplementing red-clover containing mineral may mitigate negative effects of consuming E+ TF including decreased conception rates during times of heat stress.

Utilisation of indigenous knowledge to control gastrointestinal nematodes in Southern Africa

Gastrointestinal nematodes (GIN) exacerbate the impact of droughts on the survival of cattle. The inadequacies of the conventional system make it increasingly important to explore indigenous knowledge (IK) to create drought-tolerant and GIN resilient herds. The objective of the study was to assess the indigenous strategies for controlling GIN during droughts. Face-to-face interviews with experts on IK were conducted to give insight into the importance, methods and ranking of GIN control. The experts identified 86 cattle that were used to test their assertions. The control methods used were identifying cattle that were susceptible to high GIN loads using predisposing factors, diagnosis of GIN burdens using faecal appearance, and treatment using phytotherapy. Experts ranked predisposing factors as the most critical control strategy and identified body condition, class, sex, coat colour, pregnancy status and lactation status as predisposing factors to high GIN burdens. Thin, older, dark-coloured cattle, as well as pregnant and lactating cows, were considered susceptible to GIN. However, pregnancy status, coat colour and sex were significantly associated with high GIN burdens. Cows were 2.6 times more likely to have high GIN burdens than bulls. Dark-coloured cattle were 3.5 times more likely to have high GIN burdens than light-coloured ones, and the likelihood of pregnant cows was 4.9 times higher than non-pregnant cows. A dark-coloured pregnant cow was extremely susceptible to high GIN burdens. In conclusion, knowledge of predisposing factors informs selection decisions when purchasing foundation stock. Cattle that are susceptible to high GIN loads are prioritised during droughts or culled where resources are scarce.

Genomic insights into the population history and adaptive traits of Latin American Criollo cattle.

Criollo cattle, the descendants of animals brought by Iberian colonists to the Americas, have been the subject of natural and human-mediated selection in novel tropical agroecological zones for centuries. Consequently, these breeds have evolved distinct characteristics such as resistance to diseases and exceptional heat tolerance. In addition to European taurine (Bos taurus) ancestry, it has been proposed that gene flow from African taurine and Asian indicine (Bos indicus) cattle has shaped the ancestry of Criollo cattle. In this study, we analysed Criollo breeds from Colombia and Venezuela using whole-genome sequencing (WGS) and single-nucleotide polymorphism (SNP) array data to examine population structure and admixture at high resolution. Analysis of genetic structure and ancestry components provided evidence for African taurine and Asian indicine admixture in Criollo cattle. In addition, using WGS data, we detected selection signatures associated with a myriad of adaptive traits, revealing genes linked to thermotolerance, reproduction, fertility, immunity and distinct coat and skin coloration traits. This study underscores the remarkable adaptability of Criollo cattle and highlights the genetic richness and potential of these breeds in the face of climate change, habitat flux and disease challenges. Further research is warranted to leverage these findings for more effective and sustainable cattle breeding programmes.

Phytic Acid, Protein, and Oil Contents and Their Relationship With Seed Quality During Seed Maturation of Bambara Nut (Vigna subterranea (L.) Verdc.) Landraces

ABSTRACTPhytic acid, proteins, and oils are seed storage compounds that play a role in germination and seedling growth and may determine seed quality. The pattern of accumulation of these compounds and the relationship of their contents with the seed quality of the Bambara nut (BN) are poorly understood. Seeds of three BN landraces, AbiBam001 (black/cream), LocalBam (brown speckled), and TVSU544 (cream), were harvested from two field experiments at different maturation stages and tested for final germination percentage (FGP), germination velocity index (GVI), and seedling dry weight (SDW). Seed samples from the same experiments were analyzed for phytic acid and proximate composition. Kendall's ranked correlation was used to describe relationships between phytic acid, protein, and oil contents and the seed quality of the landraces. Results showed no differences in the phytate, protein, and oil contents of landraces during seed maturation (p > 0.05), except for the phytate content of AbiBam001 (p < 0.05), which increased in the first experiment. At mass maturity, AbiBam001 and LocalBam had higher phytate and less protein and oil contents than TVSU544, implying that seed coat color may influence the phytate, protein, and oil contents of BN landraces. Higher phytate content in landraces appeared to relate positively with FGP, GVI, and SDW and vice versa. Phytic acid may positively affect seed germinability in BN landraces with high phytate content but may affect it negatively in low‐phytate landraces. The oil content of all landraces had negative correlations with most seed quality characteristics, suggesting that BN oils either are not priority reserves or play a minimal role in germination and seedling growth.

Runs of Homozygosity Detection and Selection Signature Analysis for Local Goat Breeds in Yunnan, China.

Runs of Homozygosity (ROH) are continuous homozygous DNA segments in diploid genomes, which have been used to estimate the genetic diversity, inbreeding levels, and genes associated with specific traits in livestock. In this study, we analyzed the resequencing data from 10 local goat breeds in Yunnan province of China and five additional goat populations obtained from a public database. The ROH analysis revealed 21,029 ROH segments across the 15 populations, with an average length of 1.27 Mb, a pattern of ROH, and the assessment of the inbreeding coefficient indicating genetic diversity and varying levels of inbreeding. iHS (integrated haplotype score) was used to analyze high-frequency Single-Nucleotide Polymorphisms (SNPs) in ROH regions, specific genes related to economic traits such as coat color and weight variation. These candidate genes include OCA2 (OCA2 melanosomal transmembrane protein) and MLPH (melanophilin) associated with coat color, EPHA6 (EPH receptor A6) involved in litter size, CDKAL1 (CDK5 regulatory subunit associated protein 1 like 1) and POMC (proopiomelanocortin) linked to weight variation and some putative genes associated with high-altitude adaptability and immune. This study uncovers genetic diversity and inbreeding levels within local goat breeds in Yunnan province, China. The identification of specific genes associated with economic traits and adaptability provides actionable insights for utilization and conservation efforts.