Carbon nanopipettes (CNPs), nanoprobes that integrate carbon nanotubes (CNTs) into larger easily maneuverable devices, provide a viable means of performing cell surgery with carbon-based nanostructures. Taking advantage of the nanoscopic tubular geometry and unique material properties of CNTs, CNPs facilitate minimally invasive cell probing, low-volume intracellular fluid injection, sensitive electrical measurements of cell signals, and other unique analytical abilities not possible with traditional glass-based cell probing technology. In this technology review, we highlight the cell probing applications where CNPs were used as nanoneedles for intracellular injection and nanoelectrodes for cell electrophysiology. Besides summarizing the proven capabilities of CNPs, the intent of this review is to encourage further development of CNT-based devices and related nanotechnology for novel cell probing and bioanalytical applications.