Clutch Identity Research Articles

Heterozygosity-Fitness Correlations Reveal Inbreeding Depression in Neonatal Body Size in a Critically Endangered Rock Iguana.

Inbreeding depression, though challenging to identify in nature, may play an important role in regulating the dynamics of small and isolated populations. Conversely, greater expression of genetic load can enhance opportunities for natural selection. Conditional expression concentrates these opportunities for selection and may lead to failure of detection. This study investigates the possibility for age-dependent expression of inbreeding depression in a critically endangered population of rock iguanas, Cyclura nubila caymanensis. We employ heterozygote-fitness correlations to examine the contributions of individual genetic factors to body size, a fitness-related trait. Nonsignificant reductions in homozygosity (up to 7%) were detected between neonates and individuals surviving past their first year, which may reflect natural absorption of inbreeding effects by this small, fecund population. The majority of variation in neonate body size was attributed to maternal or environmental effects (i.e., clutch identity and incubation length); however, heterozygosity across 22 microsatellite loci also contributed significantly and positively to model predictions. Conversely, effects of heterozygosity on fitness were not detectable when adults were examined, suggesting that inbreeding depression in body size may be age dependent in this taxon. Overall, these findings emphasize the importance of taking holistic, cross-generational approaches to genetic monitoring of endangered populations.

An affordable and automated imaging approach to acquire highly resolved individual data-an example of copepod growth in response to multiple stressors.

Individual trait variation is essential for populations to cope with multiple stressors and continuously changing environments. The immense number of possible stressor combinations and the influence of phenotypic variation makes experimental testing for effects on organisms challenging. The acquisition of such data requires many replicates and is notoriously laborious. It is further complicated when responses occur over short time periods. To overcome such challenges, we developed an automated imaging platform to acquire temporally highly resolved individual data. We tested this platform by exposing copepods to a combination of a biotic stressor (predator cues) and a toxicant (copper) and measured the growth response of individual copepods. We tested the automatically acquired data against published manually acquired data with much lower temporal resolution. We find the same general potentiating effects of predator cues on the adverse effects of copper, and the influence of an individual’s clutch identity on its ability to resist stress, between the data obtained from low and high temporal resolution. However, when using the high temporal resolution, we also uncovered effects of clutch ID on the timing and duration of stage transitions, which highlights the importance of considering phenotypic variation in ecotoxicological testing. Phenotypic variation is usually not acknowledged in ecotoxicological testing. Our approach is scalable, affordable, and adjustable to accommodate both aquatic and terrestrial organisms, and a wide range of visually detectable endpoints. We discuss future extensions that would further widen its applicability.

Scaling of major organs in hatchling female American alligators (Alligator mississippiensis).

Allometric equations represent relationships between morphological/physiological traits and body mass Y = aMb , where Y is the trait, a is elevation, b isthe exponent describing the shape of the line, and M is body mass. We measured visceral organ masses in hatchling alligators (Alligator mississippiensis) from five clutches from approximately 45 to 500 g wet body mass. The interaction between initial egg mass and clutch identity was significant for initial hatchling mass, but only egg mass, not clutch, had a significant effect on initial snout-vent and head length. Kidney and liver mass showed biphasic scaling with body mass, as determined by "breakpoint" analyses, with the breakpoint at 120 g wet body mass. Kidney and liver wet mass showed slopes b > 1.0 as animals increased approximately 45-120 g, with significantly lower b approximately 0.8-0.9 for alligators 120-500 g. Within kidney and liver mass, below and above the breakpoint, organ mass slopes tended to be similar across clutches. Lung and heart wet mass did not show biphasic scaling, with b approximately 0.8-0.9. Within lung and heart mass, clutches had statistically identical slopes. Combined clutch data for wet mass showed distinct regressions with b > 1.4 for approximately 45-120 g alligators' kidney and liver mass, compared with approximately 120-500 g alligators' kidney, liver, lung, and heart mass b < 1.0. Alligators show rapid kidney and liver growth following hatching, with higher rates than lung or heart tissue. Clutch, egg mass, and hatchling size influence organ size, and each factor should be accounted for in future studies exploring reptile morphology and physiology to assess environmental versus clutch contributions.

Predation Risk Potentiates Toxicity of a Common Metal Contaminant in a Coastal Copepod.

To examine whether natural stressors like predation risk affect responses to anthropogenic contaminants, we exposed nauplii of the copepod Tigriopus brevicornis to chemical cues from fish (kairomones) and copper (Cu). We tested effects of these treatments, singly and combined, on copepod age and size at maturity, and development stage sensitivity, while controlling for effects of genetic heterogeneity (clutch identity). Predation risk, Cu and clutch identity interacted in their effect on development time. Predation risk alone had minor effects, but potentiated Cu toxicity in the combined treatment by doubling the delay in age at maturity, as compared to Cu exposure alone. This potentiating effect on developmental delay appeared already at the first copepodite stage. The specific strength of response varied among nauplii from different females' clutches. There were no differences in copepod size at maturity among treatments. We did, however, find an interaction between the effect of Cu and clutch identity on copepod growth. Our results demonstrate the importance of ecological interactions for potentiating the toxicity of environmental contaminants. We also demonstrate the need to consider genetic heterogeneity in ecotoxicology. Natural variation in stressor responses has implications for the interpretation of results from toxicological studies using single-clone or inbred culture populations.

Physiological, Behavioral and Maternal Factors That Contribute to Size Variation in Larval Amphibian Populations

Size variance among similarly aged individuals within populations is a pattern common to many organisms that is a result of interactions between intrinsic and extrinsic traits of individuals. While genetic and maternal effects, as well as physiological and behavioral traits have been shown to contribute to size variation in animal populations, teasing apart the influence of such factors on individual growth rates remain a challenge. Furthermore, tracing the effects of these interactions across life stages and in shaping adult phenotypes also requires further exploration. In this study we investigated the relationship between genetics, hatching patterns, behaviors, neuroendocrine stress axis activity and variance in growth and metamorphosis among same-aged larval amphibians. Through parallel experiments we found that in the absence of conspecific interactions, hatch time and to a lesser extent egg clutch identity (i.e. genetics and maternal effects) influenced the propensity for growth and development in individual tadpoles and determined metamorphic traits. Within experimental groups we found that variance in growth rates was associated with size-dependent foraging behaviors and responses to food restriction. We also found an inverse relationship between glucocorticoid (GC) hormone levels and body mass and developmental stage among group-reared tadpoles, which suggests that GC expression plays a role in regulating differing within-population growth trajectories in response to density-dependent conditions. Taken together these findings suggest that factors that influence hatching conditions can have long-term effects on growth and development. These results also raise compelling questions regarding the extent to which maternal and genetic factors influence physiological and behavioral profiles in amphibians.

Clutch identity and predator-induced hatching affect behavior and development in a leaf-breeding treefrog

For species with complex life cycles, transitions between life stages result in niche shifts that are often associated with evolutionary trade-offs. When conditions across life stages are unpredictable, plasticity in niche shift timing may be adaptive; however, factors associated with clutch identity (e.g., genetic or maternal) may influence the effects of such plasticity. The red-eyed treefrog (Agalychnis callidryas) is an ideal organism for investigating the effects of genetics and life stage switch point timing because embryos exhibit adaptive phenotypic plasticity in hatching time. In this study, we evaluated the effects of experimentally manipulated hatching time and clutch identity on antipredator behavior of tadpoles and on developmental traits of metamorphs, including larval period, mass, SVL, and jumping ability. We found that in the presence of dragonfly nymph predator cues at 21 days post-oviposition, tadpoles reduced both their activity level and height in the water column. Furthermore, early-hatched tadpoles were less active than late-hatched tadpoles of the same age. This difference in behavior patterns of early- and late-hatched tadpoles may represent an adaptive response due to a longer period of susceptibility to odonate predators for early-hatched tadpoles, or it may be a carry-over effect mediated by early exposure to an environmental stressor (i.e., induction of early hatching). We also found that hatching time affected both behavioral traits and developmental traits, but its effect on developmental traits varied significantly among clutches. This study shows that a single early-life event may influence a suite of factors during subsequent life stages and that some of these effects appear to be dependent on clutch identity. This interaction may represent an evolutionary response to a complex life cycle and unpredictable environments, regardless of whether the clutch differences are due to additive genetic variance or maternal effects.

Within‐ and between‐season repeatability of eggshell colouration in the great reed warbler Acrocephalus arundinaceus

While avian eggshell colouration has attracted biologists for decades, little is known about its variation within individuals. The main goal of this study was to explore within‐ and between‐season repeatability of eggshell appearance in the great reed warbler Acrocephalus arundinaceus. To achieve this, we measured eggshell reflectance of first and replacement clutches of individual females within one breeding season, and the reflectance of their first clutches in two following breeding seasons. As environmental conditions may affect egg colouration, repeatability was estimated from linear mixed‐effects models where we initially included temperature and rainfall during egg laying, as well as year, clutch order and egg‐laying date as fixed effects, and clutch identity nested in females as random effects. Eggshell appearance within clutches showed moderate repeatability, while both within‐ and between‐season repeatability in clutch colouration for individual females was low. Our findings indicate that low intra‐clutch variation may have a function within the context of brood parasitism, i.e. in facilitating host recognition of alien eggs. With variable eggs between successive clutches, however, host females may need to relearn the appearance of their eggs with every clutch they lay. This could represent a significant constraint for host egg‐discrimination abilities. Yet, whether environmental or intrinsic physiological factors are responsible for the variation in eggshell colouration between successive clutches of the same females still remain to be discovered.

The effect of developmental stage on eggshell thickness variation in endangered falcons

We compared eggshell thickness of hatched eggs with that of non-developed eggs in endangered falcon taxa to explore the effect of embryo development on eggshell thinning. To our knowledge, this has never been examined before in falcons, despite the fact that eggshell thinning due to pollutants and environmental contamination is often considered the most common cause of egg failure in falcons. Because of the endangered nature of these birds, and the difficulty in gaining access to the nests and their eggs, there is a large gap in our knowledge regarding eggshell thickness variation and the factors affecting it. We used a linear mixed-effects (LME) model to explore the variation in eggshell thickness ( n = 335 eggs) in relation to the developmental stage of the eggs, but also in relation to the falcon taxa, the laying sequence and the study zone. Female identity ( n = 69) and clutch identity ( n = 98) were also included in the LME model. Our results are consistent with the prediction that eggshell thickness decreases during incubation because of the important effect of calcium uptake by the embryo during development. Our results also show that eggs laid later in the sequence had significantly thinner eggshells. In this study, we provide the first quantitative data on eggshell thickness variation of hatched eggs in different falcon taxa that were not subjected to contamination or food limitation (i.e., bred under captive conditions). Because eggshell thickness strongly influences survival and because the species examined in this study are endangered, our data represent a valuable control for future studies on the effects of pollution on eggshells from wild populations and thus are an important contribution to the conservation of falcons.

Dose and host characteristics influence virulence of ranavirus infections

Parasites play a prominent role in the ecology, evolution, and more recently, conservation of many organisms. For example, emerging infectious diseases, including a group of lethal ranaviruses, are associated with the declines and extinctions of amphibians around the world. An increasingly important basic and applied question is: what controls parasite virulence? We used a dose-response experiment with three laboratory-bred clutches of tiger salamander larvae (Ambystoma tigrinum) to test how the size of inoculum and host genetic factors influence the dynamics and outcome of ranavirus infections. We found that infection rates increased with dose and were strongly affected by clutch identity and host life history stage. Case mortality increased with dose of inoculum, but was unaffected by host characteristics. Average survival time decreased with dose and differed among clutches, but this was largely due to differences in the time to onset of symptoms. Overall, our results suggest that dose of inoculum and host characteristics (life history stage and genetic background) influence the establishment and early virus replication, and therefore the virulence of ranavirus infections.

Body Temperature and Maternal Identity Affect Snapping Turtle (Chelydra serpentina) Righting Response

Among-individual variation in locomotor performance can have important fitness consequences. In turtles, the duration of the righting response, or the time it takes an individual to return to a prone position after being placed on its carapace, is a trait with possible ecological significance. In this study, we quantified righting response time for 21 juvenile snapping turtles (Chelydra serpentina) at three testing temperatures and for an additional 254 juvenile snapping turtles representing 24 clutches at 30 C, and examined effects of testing temperature, egg size, egg incubation temperature, and clutch identity on among-individual variation in righting response. Righting response times ranged from 1 sec to over 900 sec. Testing temperature and clutch identity affected righting response time, whereas egg incubation temperature and egg mass did not. Righting response time was consistent across individuals and clutches. Our findings suggest that investigators should include clutch as an important variable in behavioral studies of turtles.

Effects of Maternal Identity and Incubation Temperature on Hatching and Hatchling Morphology in Snapping Turtles,Chelydra serpentina

Offspring phenotype can be affected by maternal effects, developmental conditions, and clutch identity. We examined the contribution of maternal effects, egg incubation temperature, and clutch identity to variation in hatching success and hatchling body size of the snapping turtle, Chelydra serpentina. We collected 726 eggs representing 24 clutches from the John Heinz National Wildlife Refuge in 1997. We examined a subset of eggs (78) for water and solid content and incubated the remaining eggs. Wet shell and wet nonshell made up 10.96% and 88.05% of the total egg mass, respectively, and dry solids, dry shell, and total water accounted for 22.78%, 7.14%, and 70.07% of total egg mass. Both mass of total water and solids in the nonshell fraction increased with egg size, although solids accounted for slightly less proportional mass in large eggs than in small eggs. Egg mass was correlated with mass at hatching, but explained only 47% of the variation in mass at hatching. Both clutch identity and egg incubation temperature affected hatching success and hatchling size. Although maternal effects no doubt play an important role in determining hatchling size, other factors, independent of maternal effects, influenced hatchling size.

Effects of maternal identity and incubation temperature on snapping turtle (Chelydra serpentina) metabolism.

Individual variation in physiological traits may have important consequences for offspring survivorship and adult fitness. Variance in offspring phenotypes is due to interindividual differences in genotype, environment, and/or maternal effects. This study examined the contributions of incubation environment, maternal effects, and clutch identity to individual variation in metabolic rates in the common snapping turtle, Chelydra serpentina. We measured standard metabolic rate, as determined by oxygen consumption, for 246 individuals representing 24 clutches at 15 degrees and 25 degrees C, and we measured standard metabolic rates additionally for 34 individuals at 20 degrees and 30 degrees C. Standard metabolic rate for 34 snapping turtles measured at 15 degrees, 20 degrees, 25 degrees, and 30 degrees C increased with increasing temperature. Mean standard metabolic rate for 246 individuals was 0.247 microL O(2) min(-1) g(-1) at 15 degrees C and 0.919 microL O(2) min(-1) g(-1) at 25 degrees C. At 15 degrees C, mass at hatching, individual mass, and egg mass had no significant effects on metabolic rate, but at 25 degrees C, mass at hatching, individual mass, and egg mass did have significant effects on metabolic rate. Incubation temperature had no significant effect on metabolic rate at 15 degrees, but it did have a significant effect at 25 degrees C. Clutch identity had a significant effect on metabolic rate at both 15 degrees and 25 degrees C. Interindividual variation in standard metabolic rate due to incubation temperature, and especially clutch identity, could have large effects on energy budgets. Results suggest that there were both environmental and genetic effects on standard metabolic rate.

Incubation Temperature and Sex Affect Mass and Energy Reserves of Hatchling Snapping Turtles, Chelydra serpentina

Temperature during embryonic development irreversibly determines gonadal sex in many oviparous reptiles. Although embryonic temperature also influences a number of other traits in these species, it is unclear whether such effects are primarily due to incubation temperature or to gonadal sex. Here we dissociated these normally confounding effects via hormonal manipulations of snapping turtle embryos (Chelydra serpentina), a species with temperature-dependent sex determination. We then ascertained temperature and sex effects on residual yolk mass, abdominal fat body mass, and total mass in neonates shortly after hatching or after one month without feeding. Yolk mass was initially affected by incubation temperature, clutch identity. and their interaction, but not gonadal sex. Yolk mass was not influenced by any of these variables 30 d after hateching. Fat mass was initially affected by temperature and clutch, but not sex. Gonadal sex did, however, affect fat mass at 30 d of age as did temperature and clutch. Incubation temperature affected total mass in a complex manner. There were significant clutch by temperature interactions initially, but no main effect of temperature. These effects changed so that the temperature effect was significant but interaction effects were not detected at 30 d of age. Repeated measures analysis of total mass after hatching and at 30 d of age indicated that turtles from lower temperatures lost more mass than turtles from higher incubation temperatures. and that females lost more mass than males. These data indicate that some hatchling traits were influenced directly by incubation temperature, whereas others were independently affected by gonadal sex. These results are consistent with a leading hypothesis for the evolution of temperature-dependent sex determination.