Close Relation Research Articles

Comprehensive genomic analysis of Burkholderia arboris PN-1 reveals its biocontrol potential against Fusarium solani-induced root rot in Panax notoginseng.

Panax notoginseng (Burkill) F.H. Chen, a valuable traditional Chinese medicine, faces significant yield and quality challenges stemming from root rot primarily caused by Fusarium solani. Burkholderia arboris PN-1, isolated from the rhizosphere soil of P. notoginseng, demonstrated a remarkable ability to inhibit the growth of F. solani. This study integrates phenotypic, phylogenetic, and genomic analyses to enhance our understanding of the biocontrol mechanisms employed by B. arboris PN-1. Phenotype analysis reveals that B. arboris PN-1 effectively suppresses P. notoginseng root rot both in vitro and in vivo. The genome of B. arboris PN-1 comprises three circular chromosomes (contig 1: 3,651,544bp, contig 2: 1,355,460bp, and contig 3: 3,471,056bp), with a 66.81% GC content, housing 7,550 protein-coding genes. Notably, no plasmids were detected. Phylogenetic analysis places PN-1 in close relation to B. arboris AU14372, B. arboris LMG24066, and B. arboris MEC_B345. Average nucleotide identity (ANI) values confirm the PN-1 classification as B. arboris. Comparative analysis with seven other B. arboris strains identified 4,628 core genes in B. arboris PN-1. The pan-genome of B. arboris appears open but may approach closure. Whole-genome sequencing revealed 265 carbohydrate-active enzymes and identified 9 gene clusters encoding secondary metabolites. This comprehensive investigation enhances our understanding of B. arboris genomes, paving the way for their potential as effective biocontrol agents against fungal plant pathogens in the future.

Identification of the Culprit in the Investigation of Traffic Offences in Cases of the Driver’s Death

The author examines investigative situations in cases of the death of key traffic accident participants — drivers of vehicles, as well as the procedure followed by the law enforcement bodies during the preliminary investigation. Problems arising during the pre-investigation reviews are identified, and recommendations for ensuring a comprehensive investigation and completing its key tasks are given. The author shows why it is necessary to install dashboard cameras on vehicles and to adopt this requirement at the legislative level. Special attention is paid to the traffic accidents when not only the driver, but also other participants receive grave injuries, as the key requirement here is to prove that the dead person was really driving the vehicle. The non-rehabilitating legal decisions regarding the guilty dead drivers that are made by the investigators meet objections from close relatives, and as a result criminal cases are directed to court to be considered in a general procedure.

Knowledge and Awareness of Spinal Muscular Atrophy in Pre-Marital Health Screenings: A Cross-Sectional Study

Background and Purpose: Early diagnosis of Spinal Muscular Atrophy (SMA) is crucial. This study assesses the awareness and attitudes toward SMA screening among individuals preparing for marriage. Methods: This cross-sectional study was conducted in three family health centers in the central district of XXX from June to September 2023. A researcher-designed 15-item instrument was utilized to collect demographic data and assess knowledge and attitudes regarding SMA among participants aged 18-65, excluding those with a diagnosis of mental retardation. Results: The study was participated in by 197 individuals, with an average age determined to be 29.45±7.48. The proportion of those supporting the implementation of SMA screening was 84.8% (n=167), while the intention to undergo the test was identified at 72.6% (n=143). A significant relationship was found between the willingness to be tested and variables such as the level of education, absence of disabled close relatives, not considering SMA to be genetically inherited, finding screenings appropriate, the perceived impact of test results on marriage, and the belief that screening could not be conducted after marriage. Conclusion: While most recognized SMA's severity, there's a notable deficit in understanding its preventability, suggesting the need for targeted educational interventions to enhance genetic screening uptake.

Genetic identification of human remains from the Korean War.

The genetic identification of skeletal remains from Chinese People's Volunteers (CPVs) of the Korean War has been challenging because of the degraded DNA samples and the lack of living close relatives. This study established a workflow for identifying CPVs by combining Y-chromosome short tandem repeats (Y-STRs), mitochondrial DNA (mtDNA) hypervariable regions I and II, autosomal STRs (aSTRs), and identity-informative SNPs (iiSNPs). A total of 20 skeletal remains of CPVs and 46 samples from their alleged relatives were collected. The success rate of DNA extraction from human remains was 100%. Based on Y-STRs, six remains shared the same male lineages with their alleged relatives. Meanwhile, mtDNA genotyping supports two remains sharing the same maternal lineages with their alleged relatives. Likelihood ratios (LRs) were further obtained from 27 aSTRs and 94 iiSNPs or 1936 iiSNPs to confirm their relationship. All joint pedigree LRs were >100. Finally, six remains were successfully identified. This pilot study for the systematic genetic identification of CPVs from the Korean War can be applied for the large-scale identification of CPVs in the future.

Asymmetry in Body Composition Variables of Youth Athletes

Assessing bilateral differences in paired anthropometric features is an important methodological problem in sports anthropology. The present study included 128 adolescent female athletes (59 rhythmic gymnasts, 58 tennis players, and 11 swimmers). Body composition components were determined using multi-frequency bioelectrical impedance measurements (analyzer InBody 170). Asymmetry coefficients of muscle and fat mass accumulation in the upper (AA) and lower (AL) limbs were calculated using the Nacheva` equation (1986). The percentiles method was applied to distribute the bilaterally studied anthropometric features according to the mean values of the units of asymmetry (UA). Wilkoxon-test was used to assess the statistically significant differences in paired variables. Kruskal-Wallis test was applied to determine the differences in UA between three assessed athlete groups, depending on their age. The differences in body composition components between rhythmic gymnasts (RG), tennis players (TP), and swimmers (SW) were well expressed in all assessed age groups. The most considerable inter-group differences were observed in terms of the asymmetry coefficient in the lean body mass (LBM) with a right direction and body fat mass with a left direction for upper limb fat mass (%, kg), which have signed the highest values in the tennis players group, followed by the RG on the same age. Swimmers had significantly the lowest values of UA for all body segments. A close relation was found between asymmetry in body composition variables and the type of sports activity. Tennis was found as a sport with more pronounced inter-limbs asymmetry.

A new generic name for the “Lepadichthys” lineatus complex with a rediagnosis of Discotrema, a senior synonym of Unguitrema, and comments on their phylogenetic relationships (Gobiesocidae: Diademichthyinae)

Abstract Rhinolepadichthys, a new genus of the gobiesocid subfamily Diademichthyinae, is described for the “Lepadichthys” lineatus complex (including Rhinolepadichthys geminuscomb. nov., R. heemstraorumcomb. nov., R. lineatuscomb. nov., and R. polyastrouscomb. nov.). Detailed investigation of external morphology and osteological anatomy of the new genus and related genera suggests that Rhinolepadichthys represents the sister genus to Discotrema, based on the following putative synapomorphies: (1) presence of a hardened (potentially keratinized) cap on the surface of at least some disc papillae (vs. surface of disc papillae soft, without hardened cap); and (2) the anterolateral part of the ventral postcleithrum extended anteriorly as a well-developed rod-like process, its tip close to the base of pelvic-fin soft ray 4 (vs. only weakly pointed, or irregular). Compared with Discotrema, Rhinolepadichthysgen. nov. is distinguished by the presence of a row of 8–12 large papillae on the inner surface of the upper and lower lips (vs. inner surface of lips smooth, without distinct papillae); the absence (vs. presence) of a well-developed lateral process on the pterotic immediately posterior to the opening of the otic canal; the presence (vs. absence) of gill rakers on the anterior edge of ceratobranchials 1–3; the presence (vs. absence) of gill rakers on the posterior edge of ceratobranchial 4; having the upper pharyngeal teeth arranged in a loose patch on the ventral surface of the pharyngobranchial 3 toothplate, with tooth tips directed posteroventrally (vs. arranged in a single row along posteroventral edge of the pharyngobranchial 3 toothplate, with tooth tips directed posteriorly); features of the adhesive disc, including outline of disc papillae roughly hexagonal or ovoid and with a flattened surface (vs. outline circular, at least some with raised, dome-like surface); the absence (vs. presence) of a deep cavity at the center of disc region C; the absence (vs. presence) of three paired and one median cluster of small papillae (reminiscent of bunches of grapes) across the surface of the adhesive disc; and having the ventral postcleithrum entire, not divided into two separate, articulating elements (vs. ventral postcleithrum divided into an anterior and posterior element, separated via a specialized joint). Reexamination of materials of the poorly known genus Unguitrema, considered a close relative of Discotrema, revealed no morphological differences between the two genera. Unguitrema therefore represents a junior synonym of Discotrema.

Men’s views on causes and consequences of erectile dysfunction or premature ejaculation in a primary care population: a qualitative study

Objective To explore men’s views on the causes and consequences of two common sexual dysfunctions – erectile dysfunction and premature ejaculation – and how this affects physical and mental health as well as social life and intimate or close relations. Design A qualitative design with semi-structured interviews using open-ended questions was employed. Individual interviews were conducted, audio recorded and transcribed, and a qualitative content analysis of the text was performed. Setting Informants were recruited from an outpatient primary care clinic in Sweden that offers consultation about sexual health to primarily younger men, age 20 years and above. Subjects A total of 18 participants were included in the study, ten with erectile dysfunction and eight with premature ejaculation or both. Main outcome measures Using the content analysis, different views and strategies of erectile dysfunction and premature ejaculation were presented to illustrate a range of perceptions. Results The main theme emerged as ‘Striving to understand and deal with the problem’, which was divided into four categories: ‘Reasons for seeking healthcare’, ‘Own perceptions/images about the problem and its cause’, ‘Experienced consequences on sex life’ and ‘Relationship qualities’. Participants experienced their problems in relation to a partner. Feelings of shame and fear of not being fit for desired sexual practices were common. They thought that underlying physical illness or previous sexual activities could have caused their problems. Decreased sexual desire and low self-esteem were seen as consequences, and participants wished for both medical treatment and counselling as support. Conclusion Sexual dysfunction impairs general health and relationships with partners. While counselling is the basic treatment, those who are offered pharmaceutical treatment need follow-up concerning effectiveness and potential concerns.

Cantharis zapatai nom. nov., an overlooked species of Cantharis Linnaeus, 1758 from Central Spain (Coleoptera: Cantharidae)

Cantharis zapatai nom. nov. is proposed for Cantharis schrammi Pic, 1918, which is a primary homonym of Cantharis paulinoi var. schrammi Pic, 1907. The male of the species is redescribed, and the female is described here. The aedeagus and several external features are illustrated, and the species is compared with the closest relatives. Cantharis zapatai nom. nov. differs from its congeners by the characteristic spot in the vertex, yellowish pronotum and elytra, and black scutellum and appendages. The species is known from three localities of west central and central Spain (Iberian Peninsula), Guadalupe (Cáceres) (type locality), Puerto del Milagro (Toledo) and Fuencaliente (Ciudad Real). A key to the Iberian species of the genus Cantharis is provided.

Use of the 23S rRNA gene as a target template in the universal loop-mediated isothermal amplification (LAMP) of genomic DNA from phytoplasmas.

Plant-pathogenic bacteria cause numerous diseases in host plants and can result in serious damage. Timely and accurate diagnostic techniques are, therefore, crucial. While advances in molecular techniques have led to diagnostic systems able to distinguish known plant pathogens at the species or strain level, systems covering larger categories are mostly lacking. In this study, a specific and universal LAMP-based diagnostic system was developed for phytoplasmas, a large group of insect-borne plant-pathogenic bacteria that cause significant agricultural losses worldwide. Targeting the 23S rRNA gene of phytoplasma, the newly designed primer set CaPU23S-4 detected 31 'Candidatus Phytoplasma' tested within 30 min. This primer set also showed high specificity, without false-positive results for other bacteria (including close relatives of phytoplasmas) or healthy plants. The detection sensitivity was ~10,000 times higher than that of PCR methods for phytoplasma detection. A simple, rapid method of DNA extraction, by boiling phytoplasma-infected tissues, was developed as well. When used together with the universal LAMP assay, it enabled the prompt and accurate detection of phytoplasmas from plants and insects. The results demonstrate the potential of the 23S rRNA gene as a versatile target for the LAMP-based universal detection of bacteria at the genus level and provide a novel avenue for exploring this gene as molecular marker for phytoplasma presence detection.IMPORTANCEPhytoplasmas are associated with economically important diseases in crops worldwide, including lethal yellowing of coconut palm, "flavescence dorée" and "bois noir" of grapevine, X-disease in stone fruits, and white leaf and grassy shoot in sugarcane. Numerous LAMP-based diagnostic assays, mostly targeting the 16S rRNA gene, have been reported for phytoplasmas. However, these assays can only detect a limited number of 'Candidatus Phytoplasma' species, whereas the genus includes at least 50 of these species. In this study, a universal, specific, and rapid diagnostic system was developed that can detect all provisionally classified phytoplasmas within 1 h by combining the LAMP technique targeting the 23S rRNA gene with a simple method for DNA extraction. This diagnostic system will facilitate the on-site detection of phytoplasmas and may aid in the discovery of new phytoplasma-associated diseases and putative insect vectors, irrespective of the availability of infrastructure and experimental resources.

Pichia kurtzmaniana f.a. sp. nov., with the transfer of eight Candida species to Pichia.

Three yeast strains belonging to the ascomycetous yeast genus Pichia were isolated from two soil samples from Yunnan and Guizhou provinces and a marine water sample from Liaoning province, PR China. Phylogenetic analyses based on the sequences of the D1/D2 domains of the large subunit(LSU) rRNA gene and the internal transcribed spacer (ITS) region indicate that these three strains, together with 12 additional strains isolated from various substrates collected in different regions or countries of the world, represent a novel species of the genus Pichia, for which the name Pichia kurtzmaniana sp. nov. (holotype: strain CGMCC 2.7213) is proposed. The novel species differs from its close relatives Candida californica by eight (1.5 %) and 26 (11.1 %) mismatches in the D1/D2 domains and the ITS region, respectively; and from Pichia chibodasensis by 11 (2.1 %) and 20 (8.7 %) mismatches in the D1/D2 domains and the ITS region, respectively. In addition, eight Candida species which belong to the Pichia clade are transferred to the genus Pichia, resulting in the proposal of the following new combinations: Pichia cabralensis comb. nov., Pichia californica comb. nov., Pichia ethanolica comb. nov., Pichia inconspicua comb. nov., Pichia phayaonensis comb. nov., Pichia pseudolambica comb. nov., Pichia rugopelliculosa comb. nov., and Pichia thaimueangensis comb. nov.

Bundo Kanduang Accounting; An Exploratory Study of the Implementation of Household Accounting in the Minangkabau Matrilineal System

This research aims to determine the role of women in managing household accounting in the Minangkabau matrilineal system. This research method uses qualitative methods. This qualitative research was designed using a phenomenological approach. The research location is at Pasar Raya Padang, Padang City, West Sumatra. The informants in this research were 10 "manggaleh mudo" housewives who were married and had children along with 2 traditional community leaders who came from the Padang nagari (KAN) traditional density. The instrument used by researchers for informants is interviews. This research uses a purposive sampling technique to determine informants. The data source is primary data. Data were collected using semi-structured interviews with informants until all the information required by the researcher was met. Data analysis techniques use the Miles and Huberman model, namely data reduction, data display, and conclusion, drawing, verification. The research results found that nowadays, apart from economic factors, Minangkabau women are encouraged to "manggaleh mudo" to participate in helping their husbands with their household finances. Another factor is to improve the quality of the family by improving their children's education, saving for old age, wanting to make a contribution to their hometown, neighbors and close relatives, to leave an inheritance for their children and grandchildren. The contribution of the mother's "manggaleh mudo" income to the household economy is greater than the husband's income. But in reality, according to the recognition of all Minangkabau people, the income of a wife or mother from "menggaleh mudo" is only as additional income, not as the main income. From a budgeting perspective, we can see that Minangkabau women budget with the aim of ensuring peace in old age, social prestige, and providing services to family members. From a recording perspective, Minangkabau women always pay attention to time and use it effectively and efficiently and will never waste time in vain. So many of them do not have time to record their household finances in writing but rather verbally. However, there are also some of them who apply record keeping because Minangkabau women have a tenacious nature, are hard workers and are always optimistic. In terms of decision making, the Minangkabau people highly value "consensus" with their husband

Genetic similarity between relatives provides evidence on the presence and history of assortative mating

Assortative mating – the non-random mating of individuals with similar traits – is known to increase trait-specific genetic variance and genetic similarity between relatives. However, empirical evidence is limited for many traits, and the implications hinge on whether assortative mating has started recently or many generations ago. Here we show theoretically and empirically that genetic similarity between relatives can provide evidence on the presence and history of assortative mating. First, we employed path analysis to understand how assortative mating affects genetic similarity between family members across generations, finding that similarity between distant relatives is more affected than close relatives. Next, we correlated polygenic indices of 47,135 co-parents from the Norwegian Mother, Father, and Child Cohort Study (MoBa) and found genetic evidence of assortative mating in nine out of sixteen examined traits. The same traits showed elevated similarity between relatives, especially distant relatives. Six of the nine traits, including educational attainment, showed greater genetic variance among offspring, which is inconsistent with stable assortative mating over many generations. These results suggest an ongoing increase in familial similarity for these traits. The implications of this research extend to genetic methodology and the understanding of social and economic disparities.

Revisiting Xylaria diversity in Southern China: Descriptions of 40 new species

AbstractThe genus Xylaria comprises a diverse group of fungi with a global distribution and significant ecological importance, known for being a source of bioactive secondary metabolites with antibacterial, antioxidative, anticarcinogenic, and additional properties. In this study, we present a comprehensive taxonomic revision of the species of Xylaria found in some parts of southern China, characterized by an extensive multilocus phylogeny analysis based on internal transcribed spacer (ITS), TUB2 (β‐tubulin), and DNA‐directed RNA polymerase II subunit 2 (rpb2) gene regions. Morphological examination and detailed comparative analyses of the collected specimens were conducted to determine the distinctiveness of each species. The multilocus phylogeny approach allowed us to infer evolutionary relationships and assess species boundaries accurately, leading to the identification of 40 novel Xylaria species hitherto unknown to science. The newly described species are: X. baoshanensis, X. bawanglingensis, X. botryoidalis, X. dadugangensis, X. doupengshanensis, X. fanglanii, X. glaucae, X. guizhouensis, X. japonica, X. jinghongensis, X. jinshanensis, X. kuankuoshuiensis, X. liboensis, X. negundinis, X. orbiculati, X. ovata, X. pseudoanisopleura, X. pseudocubensis, X. pseudobambusicola, X. pseudoglobosa, X. pseudohemisphaerica, X. pseudohypoxylon, X. puerensis, X. qianensis, X. qiongzhouensis, X. rhombostroma, X. serratifoliae, X. shishangensis, X. shuqunii, X. shuangjiangensis, X. sinensis, X. tongrenensis, X. umbellata, X. xishuiensis, X. yaorenshanensis, X. yinggelingensis, X. yumingii, X. yunnanensis, X. zangmui, and X. zonghuangii. The study's findings shed light on the distinctiveness of the newly described species, supported by both morphological distinctions and phylogenetic relationships with their close relatives. This taxonomic revision significantly contributes to our understanding the diversity of Xylaria in China and enriches the knowledge of fungal biodiversity worldwide.

Changing dynamics of antibiotic resistant Escherichia in Caspian gulls shows the importance of longitudinal environmental studies

This study is focused on Escherichia spp. isolates resistant to critically important antibiotics (cefotaxime, ciprofloxacin and colistin) among Caspian gull’s (Larus cachinnans) chicks nesting in the Nove Mlyny Water Reservoir, Czech Republic. The prevalence of antimicrobial resistance (AMR) in bacteria within wild birds is commonly evaluated using a single sampling event, capturing only a brief and momentary snapshot at a particular location. Therefore, the Caspian gulls in our study were sampled in May 2018 (n = 72) and May 2019 (n = 45), and a water sample was taken from the reservoir (2019). We obtained 197 isolates identified as E. coli by MALDI-TOF MS. A total of 158 representative isolates were whole-genome sequenced, 17 isolates were then reclassified to Escherichia albertii. We observed a higher (86 %; 62/72) occurrence of ESBL/AmpC-producing Escherichia spp. among gulls in 2018 compared to 38 % (17/45) in 2019 (p < 0.00001). The decrease in prevalence was linked to clonal lineage of E. coli ST11893 predominating in 2018 which carried blaCMY-2 and which was not recovered from the gulls in 2019. Oppositely, several Escherichia STs were found in gulls from both years as well as in the water sample including STs commonly recognized as internationally high-risk lineages such as ST10, ST58, ST88, ST117, ST648 or ST744. Phylogenetic analysis of E. coli from EnteroBase from countries where these particular gulls wander revealed that some STs are commonly found in various sources including humans and a portion of them is even closely related (up to 100 SNPs) to our isolates. We demonstrated that the occurrence of AMR in Escherichia can vary greatly in time in synanthropic birds and we detected both, a temporary prevalent lineage and several persistent STs. The close relatedness of isolates from gulls and isolates from EnteroBase highlights the need to further evaluate the risk connected to wandering birds.

Ultrasound and ultraviolet: crypsis in gliding mammals.

Gliding is only present in six extant groups of mammals-interestingly, despite divergent evolutionary histories, all mammalian gliders are strictly nocturnal. Gliding mammals also seem to have relatively high rates of ultrasound use and ultraviolet-induced photoluminescence (UVP) in contrast with their close relatives. Therefore, we hypothesized that, despite diverging lineages, gliding mammals use similar modes of cryptic communication compared to their non-gliding counterparts. We developed two datasets containing the vocal range (minimum-maximum of the dominant harmonic; kHz) and UVP of 73 and 82 species, respectively; we report four novel vocal repertoires and 57 novel observations of the presence or absence of UVP. We complemented these datasets with information about body size, diel activity patterns, habitat openness, and sociality to explore possible covariates related to vocal production and UVP. We found that the maximum of the dominant harmonic was significant higher in gliding mammals when vocalizing than their non-gliding relatives. Additionally, we found that nocturnality was the only significant predictor of UVP, consistent with the previous hypothesis that luminophores primarily drive UVP in mammal fur. In contrast, however, we did not find UVP ubiquitous in nocturnal mammals, suggesting that some unknown process may contribute to variation in this trait.

Oil smuggling, borderland and border management in Nigeria

ABSTRACT On 29 May 2023, the vexed subsidy on PMS was finally removed after the unilateral border closure imposed since 2019 failed to prevent cross-border smuggling of the petroleum products in Nigeria. The ceaseless transborder smuggling despite border closure, raises questions about the effectiveness of border management in Nigeria. This study analyses the inefficacy of border policing against smuggling in Nigeria, arguing that strategies to monitor porous borders can only prevent cross-border smuggling of fuel in the absence of relationships between smuggling gangs and compromised border inspectors at various border crossings. The study identifies how the pervasive corruption and neo-patrimonialism characteristic of the Nigerian state has aided oil theft in the country and rendered border enforcement inefficient in addressing smuggling. By drawing attention to the profound socio-cultural ties as well as close economic relations between communities and villages on both sides of the border in the smuggling activities, the paper brings scholarship on the trans-border criminal cartel into international relations and contributes to the debates on contemporary border management politics in Africa.

Complete genome characterization of cacao leafroll virus, a newly described cacao-infecting polerovirus.

The complete genome sequence of cacao leafroll virus (CaLRV; family Solemoviridae, genus Polerovirus) was determined by high-throughput sequencing of total RNA isolated from symptomatic cacao Theobroma cacao L. plants (n = 4). The CaLRV genome sequences ranged from 5,976 to 5,997 nucleotides (nt) in length and contained seven open reading frames (ORFs). Nucleotide and amino acid (aa) sequence comparisons showed that, among selected well-characterized poleroviruses, the CaLRV genome shared the highest nt sequence identity of 62% with that of potato leafroll virus (PLRV, NC_076505). A comparison of the predicted aa sequence of the CaLRV coat protein indicated that cotton leafroll dwarf virus (CLRDV, NC_014545) and melon aphid-borne yellows virus (MABYV, NC_010809) were the closest relatives, sharing 57% aa sequence identity. Bayesian phylogenetic analysis based on complete genome sequences showed that CaLRV grouped with well-characterized poleroviruses that cause diseases of cereal and vegetable crops. During the course of publishing this work, the nearly complete genome sequence of a member of the same polerovirus species, referred to as "cacao polerovirus" (OR605721), with which CaLRV shares 99% nt sequence identity, was reported.

Relations between Siberian and Kazakh Khanates in 15th-16th Centuries

This study explores the stages of interaction in the 15th-16th centuries between two Turkic post-Golden Horde states: the Siberian Khanate and the Kazakh Khanate. The role of the Kazakh factor in the ethnic history of the Siberian Tatars is examined. Primary sources such as chronicles, charters, treaties, and other published documents are utilized for analysis. It is demonstrated that the common tribal composition of these states is linked to the maintenance of close relations between their polities and institutional mechanisms inherited from the previous Golden Horde period. However, the formation of political entities (the Kazakh and Siberian Khanates) in the mid to late 15th century initiated processes leading to the emergence of distinct ethnic communities (Kazakhs and Siberian Tatars) within these states. The traditional belief in historical literature that Kuchum was a ‘Kazakh prince’ is challenged. The author disputes the position of Kazakh colleagues regarding the significant role of the ‘Kazakh’ factor, including Sultan Urus-Muhammad, in the later period of the Siberian Khanate. The nature of Siberian-Kazakh relations in the 16th century was influenced not only by the interests of the khanates’ rulers but also by external challenges posed by the emergence of new powerful political centers and leaders. The research's relevance stems from the limited exploration of the topic and conflicting approaches to the history of the formation of the Siberian Khanate and the ethnic community of Siberian Tatars in modern historiography.

Tartrate fermentation with H2 production by a new member of Sporomusaceae enriched from rice paddy soil.

In rice paddies, soil and plant-derived organic matter are degraded anaerobically to methane (CH4), a powerful greenhouse gas. The highest rate of methane emission occurs during the reproductive stage of the plant when mostly dicarboxylic acids are exudated by the roots. The emission of methane at this stage depends largely on the cooperative interaction between dicarboxylic acid-fermenting bacteria and methanogenic archaea in the rhizosphere. The fermentation of tartrate, one of the major acids exudated, has been scarcely explored in rice paddy soils. In this work, we characterized an anaerobic consortium from rice paddy soil composed of four bacterial strains, whose principal member (LT8) can ferment tartrate, producing H2 and acetate. Tartrate fermentation was accelerated by co-inoculation with a hydrogenotrophic methanogen. The assembled genome of LT8 possesses a Na+-dependent oxaloacetate decarboxylase and shows that this bacterium likely invests part of the H2 produced to reduce NAD(P)+ to assimilate C from tartrate. The phylogenetic analysis of the 16S rRNA gene, the genome-based classification as well as the average amino acid identity (AAI) indicated that LT8 belongs to a new genus within the Sporomusaceae family. LT8 shares a few common features with its closest relatives, for which tartrate degradation has not been described. LT8 is limited to a few environments but is more common in rice paddy soils, where it might contribute to methane emissions from root exudates.IMPORTANCEThis is the first report of the metabolic characterization of a new anaerobic bacterium able to degrade tartrate, a compound frequently associated with plants, but rare as a microbial metabolite. Tartrate fermentation by this bacterium can be coupled to methanogenesis in the rice rhizosphere where tartrate is mainly produced at the reproductive stage of the plant, when the maximum methane rate emission occurs. The interaction between secondary fermentative bacteria, such as LT8, and methanogens could represent a fundamental step in exploring mitigation strategies for methane emissions from rice fields. Possible strategies could include controlling the activity of these secondary fermentative bacteria or selecting plants whose exudates are more difficult to ferment.

The Hippo kinase cascade regulates a contractile cell behavior and cell density in a close unicellular relative of animals.

The genomes of close unicellular relatives of animals encode orthologs of many genes that regulate animal development. However, little is known about the function of such genes in unicellular organisms or the evolutionary process by which these genes came to function in multicellular development. The Hippo pathway, which regulates cell proliferation and tissue size in animals, is present in some of the closest unicellular relatives of animals, including the amoeboid organism Capsaspora owczarzaki. We previously showed that the Capsaspora ortholog of the Hippo pathway nuclear effector Yorkie/YAP/TAZ (coYki) regulates actin dynamics and the three-dimensional morphology of Capsaspora cell aggregates, but is dispensable for cell proliferation control (Phillips et al., 2022). However, the function of upstream Hippo pathway components, and whether and how they regulate coYki in Capsaspora, remained unknown. Here, we analyze the function of the upstream Hippo pathway kinases coHpo and coWts in Capsaspora by generating mutant lines for each gene. Loss of either kinase results in increased nuclear localization of coYki, indicating an ancient, premetazoan origin of this Hippo pathway regulatory mechanism. Strikingly, we find that loss of either kinase causes a contractile cell behavior and increased density of cell packing within Capsaspora aggregates. We further show that this increased cell density is not due to differences in proliferation, but rather actomyosin-dependent changes in the multicellular architecture of aggregates. Given its well-established role in cell density-regulated proliferation in animals, the increased density of cell packing in coHpo and coWts mutants suggests a shared and possibly ancient and conserved function of the Hippo pathway in cell density control. Together, these results implicate cytoskeletal regulation but not proliferation as an ancestral function of the Hippo pathway kinase cascade and uncover a novel role for Hippo signaling in regulating cell density in a proliferation-independent manner.