Classification Of Breast Tumors Research Articles

Segmentation-based BI-RADS ensemble classification of breast tumours in ultrasound images

BackgroundThe development of computer-aided diagnosis systems in breast cancer imaging is exponential. Since 2016, 81 papers have described the automated segmentation of breast lesions in ultrasound images using artificial intelligence. However, only two papers have dealt with complex BI-RADS classifications. PurposeThis study addresses the automatic classification of breast lesions into binary classes (benign vs. malignant) and multiple BI-RADS classes based on a single ultrasonographic image. Achieving this task should reduce the subjectivity of an individual operator’s assessment. Materials and MethodsAutomatic image segmentation methods (PraNet, CaraNet and FCBFormer) adapted to the specific segmentation task were investigated using the U-Net model as a reference. A new classification method was developed using an ensemble of selected segmentation approaches. All experiments were performed on publicly available BUS B, OASBUD, BUSI and private datasets. ResultsFCBFormer achieved the best outcomes for the segmentation task with intersection over union metric values of 0.81, 0.80 and 0.73 and Dice values of 0.89, 0.87 and 0.82, respectively, for the BUS B, BUSI and OASBUD datasets. Through a series of experiments, we determined that adding an extra 30-pixel margin to the segmentation mask counteracts the potential errors introduced by the segmentation algorithm. An assembly of the full image classifier, bounding box classifier and masked image classifier was the most accurate for binary classification and had the best accuracy (ACC; 0.908), F1 (0.846) and area under the receiver operating characteristics curve (AUROC; 0.871) in the BUS B and ACC (0.982), F1 (0.984) and AUROC (0.998) in the UCC BUS datasets, outperforming each classifier used separately. It was also the most effective for BI-RADS classification, with ACC of 0.953, F1 of 0.920 and AUROC of 0.986 in UCC BUS. Hard voting was the most effective method for dichotomous classification. For the multi-class BI-RADS classification, the soft voting approach was employed. ConclusionsThe proposed new classification approach with an ensemble of segmentation and classification approaches proved more accurate than most published results for binary and multi-class BI-RADS classifications.

Spatial and geometric learning for classification of breast tumors from multi-center ultrasound images: a hybrid learning approach

BackgroundBreast cancer is the most common cancer among women, and ultrasound is a usual tool for early screening. Nowadays, deep learning technique is applied as an auxiliary tool to provide the predictive results for doctors to decide whether to make further examinations or treatments. This study aimed to develop a hybrid learning approach for breast ultrasound classification by extracting more potential features from local and multi-center ultrasound data.MethodsWe proposed a hybrid learning approach to classify the breast tumors into benign and malignant. Three multi-center datasets (BUSI, BUS, OASBUD) were used to pretrain a model by federated learning, then every dataset was fine-tuned at local. The proposed model consisted of a convolutional neural network (CNN) and a graph neural network (GNN), aiming to extract features from images at a spatial level and from graphs at a geometric level. The input images are small-sized and free from pixel-level labels, and the input graphs are generated automatically in an unsupervised manner, which saves the costs of labor and memory space.ResultsThe classification AUCROC of our proposed method is 0.911, 0.871 and 0.767 for BUSI, BUS and OASBUD. The balanced accuracy is 87.6%, 85.2% and 61.4% respectively. The results show that our method outperforms conventional methods.ConclusionsOur hybrid approach can learn the inter-feature among multi-center data and the intra-feature of local data. It shows potential in aiding doctors for breast tumor classification in ultrasound at an early stage.

Fine tuning deep learning models for breast tumor classification

This paper proposes an approach to enhance the differentiation task between benign and malignant Breast Tumors (BT) using histopathology images from the BreakHis dataset. The main stages involve preprocessing, which encompasses image resizing, data partitioning (training and testing sets), followed by data augmentation techniques. Both feature extraction and classification tasks are employed by a Custom CNN. The experimental results show that the proposed approach using the Custom CNN model exhibits better performance with an accuracy of 84% than applying the same approach using other pretrained models, including MobileNetV3, EfficientNetB0, Vgg16, and ResNet50V2, that present relatively lower accuracies, ranging from 74 to 82%; these four models are used as both feature extractors and classifiers. To increase the accuracy and other performance metrics, Grey Wolf Optimization (GWO), and Modified Gorilla Troops Optimization (MGTO) metaheuristic optimizers are applied to each model separately for hyperparameter tuning. In this case, the experimental results show that the Custom CNN model, refined with MGTO optimization, reaches an exceptional accuracy of 93.13% in just 10 iterations, outperforming the other state-of-the-art methods, and the other four used pretrained models based on the BreakHis dataset.

Abstract PO5-13-11: Quantitative Assessment of HER2 Expression in Intraductal Neoplasms of the Breast

Abstract HER2 (ERBB2) is an established prognostic and predictive marker for patients with invasive breast cancer and used in HER2-targeted therapy. The clinical and biological significance of expression of HER2 protein in patients with intraductal neoplasms of the breast is not well characterized. In this study, we used our HS-HER2 (High Sensitivity-HER2) which is a CAP/CLIA certified laboratory derived test (LDT) using quantitative immunofluorescence (QIF). We evaluated HER2 expression in DCIS (ductal carcinoma in situ), LCIS (lobular carcinoma in situ) and benign lesions to correlate with their clinicopathologic characteristics. Thirty- eight cases of DCIS, and fourteen cases of LCIS and thirty benign cases were selected from the Yale Pathology department archives and 252 ROIs (regions of interest) were annotated by a board-certified pathologist. DCIS is classified according to the three-tier nuclear grading system: low, intermediate, and high-nuclear grade. LCIS is classified as PLCIS (pleomorphic variant) and CLCIS (classic LCIS) according to the WHO classification of breast tumors. Serial sections of FFPE tumor specimens were used to accurately quantify the HER2 expression by the HS-HER2 assay and the acquisition by QuPath v.04 with Qymia extension. According to the LOD (limit of detection,3 amol/mm2), LOQ (limit of quantification, 9 amol/mm2) and LOL (limit of linearity, 23 amol/mm2) of the optimized HS-HER2 assay as performed in our CLIA lab shows a broad range of HER2 expression in both DCIS and LCIS lesions, ranging from 0.7 amol/mm2 to 111.4 amol/mm2 in DCIS and 3.6 amol/mm2 to 49.9 amol/mm2 in LCIS. High grade DCIS lesions express higher average HER2 levels (111.4 + 0.7 amol/mm2) than combined low and intermediate grade DCIS (77.9 +1.9 amol/mm2) with no significant difference between low/intermediate and high-grade DCIS. CLCIS lesions express higher average HER2 level (49.9 + 3.6 amol/mm2) than PLCIS (35.1 + 5.4amol/mm2) but again this is not statistically significant. HER protein expression is relatively low in benign lesions ranging from 0.8 to 8.4 amol/mm2. Using the HS-HER2 assay, our results show quantitative level HER2 levels in DCIS and LCIS breast lesions. These findings may be important as HER2 targeted therapies that work in gene-unamplified cancer (HER2 conjugated ADCs) gain broader usage in the clinic. Citation Format: Nay Nwe Nyein Chan, Haiying Zhan, Revekka Khaimova, Thazin Aung, Charles Robbins, Patricia Gaule, David Rimm. Quantitative Assessment of HER2 Expression in Intraductal Neoplasms of the Breast [abstract]. In: Proceedings of the 2023 San Antonio Breast Cancer Symposium; 2023 Dec 5-9; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2024;84(9 Suppl):Abstract nr PO5-13-11.

The Combination of Feature Extraction and Classification by Bag of Visual Words to Detect Breast Cancer for Improved Accuracy

The main objective is to improve diagnostic accuracy of the breast cancer. The goal is to improve the accuracy of breast cancer detection by leveraging both the discriminative power of feature extraction and the robustness of classification using BoVW. By combining these techniques, the system aims to effectively distinguish between cancerous and non-cancerous tissues in medical images, thereby aiding in early diagnosis and treatment planning for breast cancer patient. The breast cancer sample images were gathered from the city's hospitals Chennai 2023 as well as the mini-MIAS database and DDSM database. The BoVW classifier is used to identify and classify breast tumor images according to their size. This improves the efficacy of the classification method developed for the CAD system's mammography breast cancer picture categorization. Several Computer Aided Diagnosis (CAD) systems have been created to use mammography images to identify breast cancer in its early stages. ANN attained 93.6%,94.18%, 93.2% and SVM gained 92%,92.44%,93.02% for Precision, Recall and Accuracy Respectively.The proposed method display excellent accuracy of 98.83% over the other methods. The novelty could stem from the seamless integration of multiple modalities within the feature extraction and classification framework.

Nomogram for preoperative differentiation of benign and malignant breast tumors using contrast-enhanced cone-beam breast CT (CE CB-BCT) quantitative imaging and assessment features.

Breast cancer's impact necessitates refined diagnostic approaches. This study develops a nomogram using radiology quantitative features from contrast-enhanced cone-beam breast CT for accurate preoperative classification of benign and malignant breast tumors. A retrospective study enrolled 234 females with breast tumors, split into training and test sets. Contrast-enhanced cone-beam breast CT-images were acquired using Koning Breast CT-1000. Quantitative assessment features were extracted via 3D-slicer software, identifying independent predictors. The nomogram was constructed to preoperative differentiation benign and malignant breast tumors. Calibration curve was used to assess whether the model showed favorable correspondence with pathological confirmation. Decision curve analysis confirmed the model's superiority. The study enrolled 234 female patients with a mean age of 50.2years (SD ± 9.2). The training set had 164 patients (89 benign, 75 malignant), and the test set had 70 patients (29 benign, 41 malignant). The nomogram achieved excellent predictive performance in distinguishing benign and malignant breast lesions with an AUC of 0.940 (95% CI 0.900-0.940) in the training set and 0.970 (95% CI 0.940-0.970) in the test set. This study illustrates the effectiveness of quantitative radiology features derived from contrast-enhanced cone-beam breast CT in distinguishing between benign and malignant breast tumors. Incorporating these features into a nomogram-based diagnostic model allows for breast tumor diagnoses that are objective and possess good accuracy. The application of these insights could substantially increase reliability and efficacy in the management of breast tumors, offering enhanced diagnostic capability.

Multi-task learning for segmentation and classification of breast tumors from ultrasound images

Segmentation and classification of breast tumors are critical components of breast ultrasound (BUS) computer-aided diagnosis (CAD), which significantly improves the diagnostic accuracy of breast cancer. However, the characteristics of tumor regions in BUS images, such as non-uniform intensity distributions, ambiguous or missing boundaries, and varying tumor shapes and sizes, pose significant challenges to automated segmentation and classification solutions. Many previous studies have proposed multi-task learning methods to jointly tackle tumor segmentation and classification by sharing the features extracted by the encoder. Unfortunately, this often introduces redundant or misleading information, which hinders effective feature exploitation and adversely affects performance. To address this issue, we present ACSNet, a novel multi-task learning network designed to optimize tumor segmentation and classification in BUS images. The segmentation network incorporates a novel gate unit to allow optimal transfer of valuable contextual information from the encoder to the decoder. In addition, we develop the Deformable Spatial Attention Module (DSAModule) to improve segmentation accuracy by overcoming the limitations of conventional convolution in dealing with morphological variations of tumors. In the classification branch, multi-scale feature extraction and channel attention mechanisms are integrated to discriminate between benign and malignant breast tumors. Experiments on two publicly available BUS datasets demonstrate that ACSNet not only outperforms mainstream multi-task learning methods for both breast tumor segmentation and classification tasks, but also achieves state-of-the-art results for BUS tumor segmentation. Code and models are available at https://github.com/qqhe-frank/BUS-segmentation-and-classification.git.

DBL-Net: A dual-branch learning network with information from spatial and frequency domains for tumor segmentation and classification in breast ultrasound image

Breast cancer is a common malignancy, ranking as one of the most prevalent cancers among women globally. Improving treatment success rates for breast cancer are crucially dependent on early detection and accurate diagnosis. Ultrasound imaging, as a non-invasive and low-radiation imaging technique, plays a significant role in early breast cancer detection. However, due to the characteristics of fuzzy tumor boundaries and irregular shapes of the tumor, accurate breast tumor classification and segmentation remain challenging tasks. This paper introduces a novel approach for breast ultrasound image segmentation and classification tasks. Firstly, we study the potential value of frequency domain information in breast image analysis and propose the DBL-Net, a multi-task learning network for simultaneous tumor segmentation and tumor classification. Secondly, we customize a Spatial-Frequency Domain Feature Encoding module (S-FEM) to better encode and fuse spatial and frequency domain features of breast ultrasound images. Furthermore, we design a Representational Perception Enhancer (RPE) to improve the feature representation capabilities and prediction accuracy of the model. Finally, We have carried out a comprehensive series of tests on the BUS dataset, and the findings clearly indicate that our method outperforms the current state-of-the-art methods.

Adaptive Machine Learning Approach for Importance Evaluation of Multimodal Breast Cancer Radiomic Features.

Breast cancer holds the highest diagnosis rate among female tumors and is the leading cause of death among women. Quantitative analysis of radiological images shows the potential to address several medical challenges, including the early detection and classification of breast tumors. In the P.I.N.K study, 66 women were enrolled. Their paired Automated Breast Volume Scanner (ABVS) and Digital Breast Tomosynthesis (DBT) images, annotated with cancerous lesions, populated the first ABVS+DBT dataset. This enabled not only a radiomic analysis for the malignant vs. benign breast cancer classification, but also the comparison of the two modalities. For this purpose, the models were trained using a leave-one-out nested cross-validation strategy combined with a proper threshold selection approach. This approach provides statistically significant results even with medium-sized data sets. Additionally it provides distributional variables of importance, thus identifying the most informative radiomic features. The analysis proved the predictive capacity of radiomic models even using a reduced number of features. Indeed, from tomography we achieved AUC-ROC using 19 features and using 7 of them; while from ABVS we attained an AUC-ROC of using 22 features and using only 3 features. Although the predictive power of DBT outperforms ABVS, when comparing the predictions at the patient level, only 8.7% of lesions are misclassified by both methods, suggesting a partial complementarity. Notably, promising results (AUC-ROC ABVS-DBT - ) were achieved using non-geometric features, thus opening the way to the integration of virtual biopsy in medical routine.

Integration of ultrasound and mammogram for multimodal classification of breast cancer using hybrid residual neural network and machine learning

Breast cancer (BC) is one of the topmost causes of mortality in women all over the world. Early detection and classification of the tumor allow proper treatment of patients and chances of survival. In this article, we propose a hybrid residual neural network (ResNet) and machine learning framework and integrate the features of both mammography (MG) and ultrasound (US) images to perform the multimodal classification of BC images as benign or malignant. The features are extracted automatically from the input images of each modality using the residual neural network from the average pooling layer. Next, the feature level fusion is carried out to obtain a feature vector by combining features of MG & US. Finally, the multimodal classification is performed using the support vector machine (SVM) as a classifier. Experiments are performed on a real-time dataset collected from patients who have undergone both MG and US examinations. The classification accuracy obtained for the multimodal approach with SVM is 99.22%, which is higher than unimodal systems. Results show that the proposed multimodal approach performs better in classifying breast tumors than unimodal mammogram and ultrasound systems.

Classifying Breast Tumors in Digital Tomosynthesis by Combining Image Quality-Aware Features and Tumor Texture Descriptors

Digital breast tomosynthesis (DBT) is a 3D breast cancer screening technique that can overcome the limitations of standard 2D digital mammography. However, DBT images often suffer from artifacts stemming from acquisition conditions, a limited angular range, and low radiation doses. These artifacts have the potential to degrade the performance of automated breast tumor classification tools. Notably, most existing automated breast tumor classification methods do not consider the effect of DBT image quality when designing the classification models. In contrast, this paper introduces a novel deep learning-based framework for classifying breast tumors in DBT images. This framework combines global image quality-aware features with tumor texture descriptors. The proposed approach employs a two-branch model: in the top branch, a deep convolutional neural network (CNN) model is trained to extract robust features from the region of interest that includes the tumor. In the bottom branch, a deep learning model named TomoQA is trained to extract global image quality-aware features from input DBT images. The quality-aware features and the tumor descriptors are then combined and fed into a fully-connected layer to classify breast tumors as benign or malignant. The unique advantage of this model is the combination of DBT image quality-aware features with tumor texture descriptors, which helps accurately classify breast tumors as benign or malignant. Experimental results on a publicly available DBT image dataset demonstrate that the proposed framework achieves superior breast tumor classification results, outperforming all existing deep learning-based methods.

Classification of multi-feature fusion ultrasound images of breast tumor within category 4 using convolutional neural networks.

Breast tumor is a fatal threat to the health of women. Ultrasound (US) is a common and economical method for the diagnosis of breast cancer. Breast imaging reporting and data system (BI-RADS) category 4 has the highest false-positive value of about 30% among five categories. The classification task in BI-RADS category 4 is challenging and has not been fully studied. This work aimed to use convolutional neural networks (CNNs) for breast tumor classification using B-mode images in category 4 to overcome the dependence on operator and artifacts. Additionally, this work intends to take full advantage of morphological and textural features in breast tumor US images to improve classification accuracy. First, original US images coming directly from the hospital were cropped and resized. In 1385 B-mode US BI-RADS category 4 images, the biopsy eliminated 503 samples of benign tumor and left 882 of malignant. Then, K-means clustering algorithm and entropy of sliding windows of US images were conducted. Considering the diversity of different characteristic information of malignant and benign represented by original B-mode images, K-means clustering images and entropy images, they are fused in a three-channel form multi-feature fusion images dataset. The training, validation, and test sets are 969, 277, and 139. With transfer learning, 11 CNN models including DenseNet and ResNet were investigated. Finally, by comparing accuracy, precision, recall, F1-score, and area under curve (AUC) of the results, models which had better performance were selected. The normality of data was assessed by Shapiro-Wilk test. DeLong test and independent t-test were used to evaluate the significant difference of AUC and other values. False discovery rate was utilized to ultimately evaluate the advantages of CNN with highest evaluation metrics. In addition, the study of anti-log compression was conducted but no improvement has shown in CNNs classification results. With multi-feature fusion images, DenseNet121 has highest accuracy of 80.22±1.45% compared to other CNNs, precision of 77.97±2.89% and AUC of 0.82±0.01. Multi-feature fusion improved accuracy of DenseNet121 by 1.87% from classification of original B-mode images (p<0.05). The CNNs with multi-feature fusion show a good potential of reducing the false-positive rate within category 4. The work illustrated that CNNs and fusion images have the potential to reduce false-positive rate in breast tumor within US BI-RADS category 4, and make the diagnosis of category 4 breast tumors to be more accurate and precise.

Dielectric Characterization of Ex-Vivo Breast Tissues: Differentiation of Tumor Types through Permittivity Measurements.

Early analysis and diagnosis of breast tumors is essential for either quickly launching a treatment or for seeing the evolution of patients who, for instance, have already undergone chemotherapy treatment. Once tissues are excised, histological analysis is the most frequent tool used to characterize benign or malignant tumors. Dielectric microwave spectroscopy makes use of an open-ended coaxial probe in the 1-8 GHz frequency range to quickly identify the type of tumor (ductal carcinoma, lobular carcinoma, mucinous carcinoma and fibroadenoma). The experiment was undertaken with data from 70 patients who had already undergone chemotherapy treatment, which helped to electrically map the histological tissues with their electric permittivity. Thus, the variations in the permittivity of different types of tumors reveal distinctive patterns: benign tumors have permittivity values lower than 35, while malignant ones range between 40 and 60. For example, at a frequency of 2 GHz, the measured permittivity was 45.6 for ductal carcinoma, 33.1 for lobular carcinoma, 59.5 for mucinous carcinoma, and 27.6 for benign tumors. This differentiation remains consistent in a frequency range of 1 to 4.5 GHz. These results highlight the effectiveness of these measurements in the classification of breast tumors, providing a valuable tool for quick and accurate diagnosis and effective treatment.

Improving the Automated Diagnosis of Breast Cancer with Mesh Reconstruction of Ultrasound Images Incorporating 3D Mesh Features and a Graph Attention Network

This study proposes a novel approach for breast tumor classification from ultrasound images into benign and malignant by converting the region of interest (ROI) of a 2D ultrasound image into a 3D representation using the point-e system, allowing for in-depth analysis of underlying characteristics. Instead of relying solely on 2D imaging features, this method extracts 3D mesh features that describe tumor patterns more precisely. Ten informative and medically relevant mesh features are extracted and assessed with two feature selection techniques. Additionally, a feature pattern analysis has been conducted to determine the feature’s significance. A feature table with dimensions of 445 × 12 is generated and a graph is constructed, considering the rows as nodes and the relationships among the nodes as edges. The Spearman correlation coefficient method is employed to identify edges between the strongly connected nodes (with a correlation score greater than or equal to 0.7), resulting in a graph containing 56,054 edges and 445 nodes. A graph attention network (GAT) is proposed for the classification task and the model is optimized with an ablation study, resulting in the highest accuracy of 99.34%. The performance of the proposed model is compared with ten machine learning (ML) models and one-dimensional convolutional neural network where the test accuracy of these models ranges from 73 to 91%. Our novel 3D mesh-based approach, coupled with the GAT, yields promising performance for breast tumor classification, outperforming traditional models, and has the potential to reduce time and effort of radiologists providing a reliable diagnostic system.

Ultrasound k-nearest neighbor entropy imaging: Theory, algorithm, and applications

Ultrasound information entropy is a flexible approach for analyzing ultrasound backscattering. Shannon entropy imaging based on probability distribution histograms (PDHs) has been implemented as a promising method for tissue characterization and diagnosis. However, the bin number affects the stability of entropy estimation. In this study, we introduced the k-nearest neighbor (KNN) algorithm to estimate entropy values and proposed ultrasound KNN entropy imaging. The proposed KNN estimator leveraged the Euclidean distance between data samples, rather than the histogram bins by conventional PDH estimators. We also proposed cumulative relative entropy (CRE) imaging to analyze time-series radiofrequency signals and applied it to monitor thermal lesions induced by microwave ablation (MWA). Computer simulation phantom experiments were conducted to validate and compare the performance of the proposed KNN entropy imaging, the conventional PDH entropy imaging, and Nakagami-m parametric imaging in detecting the variations of scatterer densities and visualizing inclusions. Clinical data of breast lesions were analyzed, and porcine liver MWA experiments ex vivo were conducted to validate the performance of KNN entropy imaging in classifying benign and malignant breast tumors and monitoring thermal lesions, respectively. Compared with PDH, the entropy estimation based on KNN was less affected by the tuning parameters. KNN entropy imaging was more sensitive to changes in scatterer densities and performed better visualizable capability than typical Shannon entropy (TSE) and Nakagami-m parametric imaging. Among different imaging methods, KNN-based Shannon entropy (KSE) imaging achieved the higher accuracy in classification of benign and malignant breast tumors and KNN-based CRE imaging had larger lesion-to-normal contrast when monitoring the ablated areas during MWA at different powers and treatment durations. Ultrasound KNN entropy imaging is a potential quantitative ultrasound approach for tissue characterization.

Breast Tumor Classification with Enhanced Transfer Learning Features and Selection Using Chaotic Map-Based Optimization

Among women, breast cancer remains one of the most dominant cancer types. In the year 2022, around 2,87,800 new cases were diagnosed, and 43,200 women faced mortality due to this disease. Analysis and processing of mammogram images is vital for its earlier identification and thus helps in reducing mortality rates and facilitating effective treatment for women. Accordingly, several deep-learning techniques have emerged for mammogram classification. However, it is still challenging and requires promising solutions. This study proposed a newer automated computer-aided implementation for breast cancer classification. The work starts with enhancing the mammogram contrast using a haze-reduced adaptive technique followed by augmentation. Afterward, EfficientNet-B4 pre-trained architecture is trained for both original and enhanced sets of mammograms individually using static hyperparameters’ initialization. This provides an output of 1792 feature vectors for each set and then fused using a serial mid-value-based approach. The final feature vectors are then optimized using a chaotic-crow-search optimization algorithm. Finally, the obtained significant feature vectors were classified with the aid of machine learning algorithms. The evaluation is made using INbreast and CBIS-DDSM databases. The proposed framework attained a balanced computation time with a maximum classification performance of 98.459 and 96.175% accuracies on INbreast and CBIS-DDSM databases, respectively.

TumorDet: A Breast Tumor Detection Model Based on Transfer Learning and ShuffleNet

Background: Breast tumor is among the most malignant tumors and early detection can improve patient’s survival rate. Currently, mammography is the most reliable method for diagnosing breast tumor because of high image resolution. Because of the rapid development of medical and artificial intelligence techniques, computer-aided diagnosis technology can greatly improve the detection accuracy of breast tumors and medical imaging has begun to use deep-learning-based approaches. In this study, the TumorDet model is proposed to detect the benign and malignant lesions of breast tumor, which has positive significance for assisting doctors in diagnosis. Objective: We use the proposed TumorDet to analyze and predict breast tumors on the real MRI dataset. Methods: (1) We introduce an adaptive gamma correction (AGC) method to balance brightness equalization and increase the contrast of mammography images; (2) we use the ShuffleNet model to exchange information between different feature layers and extract the hidden high-level features of medical images; and (3) we use the transfer learning method to fine-tune the ShuffleNet model and obtain the optimal parameters. Results: The proposed TumorDet model has shown that accuracy, sensitivity, and specificity reach 90.43%, 89.37%, and 87.81%, respectively. TumorDet performs well in the breast tumor detection task. In addition, we use the proposed TumorDet to conduct experiments on other tasks, such as forest fires, and the robustness of TumorDet is proved by experimental results. Conclusion: TumorDet employs the ShuffleNet model to exchange information between different feature layers without increasing the number of network parameters and applies transfer learning method to further extract the basic features of medical images by fine-tuning. The model is beneficial for the localization and classification of breast tumors and also performs well in forest fire detection.

Prediction of Benefit From Adjuvant Pertuzumab by 80-Gene Signature in the APHINITY (BIG 4-11) Trial.

At the primary analysis, the APHINITY trial reported a statistically significant but modest benefit of adding pertuzumab to standard adjuvant chemotherapy plus trastuzumab in patients with histologically confirmed human epidermal growth factor receptor 2 (HER2)-positive early-stage breast cancer. This study evaluated whether the 80-gene molecular subtyping signature (80-GS) could identify patients within the APHINITY population who derive the most benefit from dual anti-HER2 therapy. In a nested case-control study design of 1,023 patients (matched event to control ratio of 3:1), the 80-GS classified breast tumors into functional luminal type, HER2 type, or basal type. Additionally, 80-GS distinguished tumor subtypes that exhibited a single-dominant functional pathway versus tumors with multiple activated pathways. The primary end point was invasive disease-free survival (IDFS). Hazard ratios (HRs) were evaluated by Cox regression. After excluding patients without appropriate consent and those with missing data, 964 patients were included. The 80-GS classified 50% (n = 479) of tumors as luminal type, 28% (n = 275) as HER2 type, and 22% (n = 209) as basal type. Most luminal-type tumors (86%) displayed a single-activated pathway, whereas 49% of HER2-type and 42% of basal-type tumors were dual activated. There was no significant difference in IDFS among different conventional 80-GS subtypes (single- and dual-activated subtypes combined). However, basal single-subtype tumors were significantly more likely to have an IDFS event (hazard ratio, 1.69 [95% CI, 1.12 to 2.54]) compared with other subtypes. HER2 single-subtype tumors displayed a trend toward greater beneficial effect on the addition of pertuzumab (hazard ratio, 0.56 [95% CI, 0.27 to 1.16]) compared with all other subtypes. The 80-GS identified subgroups of histologically confirmed HER2-positive tumors with distinct biological characteristics. Basal single-subtype tumors exhibit an inferior prognosis compared with other subgroups and may be candidates for additional therapeutic strategies. Preliminary results suggest patients with HER2-positive, genomically HER2 single-subtype tumors may particularly benefit from added pertuzumab, which warrants further investigation.

Multi-task approach based on combined CNN-transformer for efficient segmentation and classification of breast tumors in ultrasound images

Nowadays, inspired by the great success of Transformers in Natural Language Processing, many applications of Vision Transformers (ViTs) have been investigated in the field of medical image analysis including breast ultrasound (BUS) image segmentation and classification. In this paper, we propose an efficient multi-task framework to segment and classify tumors in BUS images using hybrid convolutional neural networks (CNNs)-ViTs architecture and Multi-Perceptron (MLP)-Mixer. The proposed method uses a two-encoder architecture with EfficientNetV2 backbone and an adapted ViT encoder to extract tumor regions in BUS images. The self-attention (SA) mechanism in the Transformer encoder allows capturing a wide range of high-level and complex features while the EfficientNetV2 encoder preserves local information in image. To fusion the extracted features, a Channel Attention Fusion (CAF) module is introduced. The CAF module selectively emphasizes important features from both encoders, improving the integration of high-level and local information. The resulting feature maps are reconstructed to obtain the segmentation maps using a decoder. Then, our method classifies the segmented tumor regions into benign and malignant using a simple and efficient classifier based on MLP-Mixer, that is applied for the first time, to the best of our knowledge, for the task of lesion classification in BUS images. Experimental results illustrate the outperformance of our framework compared to recent works for the task of segmentation by producing 83.42% in terms of Dice coefficient as well as for the classification with 86% in terms of accuracy.

Targeting cholesterol impairs cell invasion of all breast cancer types

BackgroundBreast cancer clinical outcome relies on its intrinsic molecular subtype and mortality is almost exclusively due to metastasis, whose mechanism remains unclear. We recently revealed the specific contribution of plasma membrane cholesterol to the invasion of malignant MCF10CAIa but not premalignant MCF10AT and normal MCF10A cell lines in 2D, through invadopodia formation and extracellular matrix (ECM) degradation. In the present study, we address the impact of breast cancer subtypes, mutations and aggressiveness on cholesterol implication in breast cancer cell invasion and 3D spheroid invasion and growth.MethodsWe used nine breast cancer cell lines grouped in four subtypes matching breast tumor classification. Four of these cell lines were also used to generate 3D spheroids. These cell lines were compared for cell invasion in 2D and 3D, spheroid growth in 3D, gelatin degradation, cortactin expression, activation and subcellular distribution as well as cell surface cholesterol distribution and lipid droplets. The effect of plasma membrane cholesterol depletion on all these parameters was determined in parallel and systematically compared with the impact of global matrix metalloproteinase (MMP) inhibition.ResultsThe six invasive cell lines in 2D were sensitive to partial cholesterol depletion, independently of their subtype, aggressiveness or mutation. Nevertheless, the effect was stronger in the three cell lines able to degrade gelatin. 3D spheroid invasion was also reduced after cholesterol depletion in all breast cancer subtypes tested. Notably, targeting cholesterol was more powerful than MMP inhibition in reducing invasion in both 2D and 3D culture models. Moreover, cholesterol depletion in the six invasive cell lines impaired cortactin distribution in the perinuclear region where invadopodia localized. Breast cancer cell line aggressiveness relied on cholesterol-enriched domains at the ECM-free side and intracellular lipid droplets. Furthermore, the three gelatin-degrading cell lines were characterized by increased cholesterol-enriched submicrometric domains at their ECM-contact side.ConclusionTogether, our data suggest cell surface cholesterol combined with lipid droplet labeling as a breast cancer cell aggressiveness marker. They also open the way to test other cholesterol-targeting drugs in more complex models to further evaluate whether cholesterol could represent a strategy in breast cancer therapy.